Array 1 126091-124903 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRWV01000005.1 Escherichia coli strain KCJK8392 NODE_5_length_132178_cov_14.794117, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 126090 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 126029 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 125968 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 125907 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 125846 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 125785 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 125724 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 125663 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 125602 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 125541 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 125480 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 125419 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 125358 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 125297 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 125236 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 125175 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 125114 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 125053 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 124992 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 124931 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 463-1754 **** Predicted by CRISPRDetect 2.4 *** >NZ_SRWV01000129.1 Escherichia coli strain KCJK8392 NODE_129_length_1875_cov_8.001144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 463 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 524 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 585 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 646 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 707 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 768 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 829 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 890 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 951 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 1012 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 1073 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 1134 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [1158] Deletion [1175] 1176 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 1237 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 1298 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 1359 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 1420 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1481 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 1542 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 1604 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 1665 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 1726 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAGGCAGCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGAG # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //