Array 1 967966-969397 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPZ01000001.1 Salmonella enterica strain 16E067 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 967966 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 968027 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 968088 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 968149 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 968210 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 968271 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 968332 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 968393 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 968454 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 968515 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 968576 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 968637 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 968698 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 968759 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 968820 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 968882 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 968943 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 969004 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 969065 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 969126 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 969187 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 969248 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 969309 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 969370 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 24 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 985529-987493 **** Predicted by CRISPRDetect 2.4 *** >NZ_WUPZ01000001.1 Salmonella enterica strain 16E067 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 985529 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 985590 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 985651 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 985712 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 985773 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 985834 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 985895 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 985957 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 986018 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 986079 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 986140 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 986201 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 986262 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 986323 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 986384 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 986445 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 986506 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 986567 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 986628 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 986689 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 986750 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 986812 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 986915 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 986976 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 987037 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 987098 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 987159 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 987220 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 987281 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 987342 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 987403 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 987464 29 96.6 0 A............................ | A [987490] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //