Array 1 20833-21858 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JWNG01000010.1 Neisseria meningitidis strain Nm350703 Scaffold10, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     20833	    36	  97.2	    30	........G...........................	TTCCCATCTTACTCTCCCCTTGCCACTCAA	
     20899	    36	 100.0	    30	....................................	AAGGGGGGTCAGGGGGGTCGGAAAAAATAC	
     20965	    36	 100.0	    30	....................................	ATCAAAAACGCTCAATATAAAAAATCAAAA	
     21031	    36	 100.0	    30	....................................	AATTTACCAAAACAAACCAATACCATGCAC	
     21097	    36	 100.0	    30	....................................	GTGTGTTCGGCAACTCTGACCGCATGACGA	
     21163	    36	 100.0	    30	....................................	AAAAATAACAGACTCATCAGAAAAATAAAT	
     21229	    36	 100.0	    30	....................................	CCAGCCTACAAACCCTACAATCGCAATCAA	
     21295	    36	 100.0	    30	....................................	CCTGACAGGCTAGGATTTCCGGAAAATAAT	
     21361	    36	 100.0	    30	....................................	TATCTTTCTCGCCAAACCAACCGTTGTAGG	
     21427	    36	 100.0	    30	....................................	TCCCTTGGGATCTCATGCAATAATTTCCCC	
     21493	    36	 100.0	    30	....................................	CCTGACAGGCTAGGATTTCCGGAAAATAAT	
     21559	    36	 100.0	    30	....................................	TATCTTTCTCGCCAAACCAACCGTTGTAGG	
     21625	    36	 100.0	    30	....................................	TCCCTTGGGATCTCATGCAATAATTTCCCC	
     21691	    36	 100.0	    30	....................................	CTAAGAGCCGCACCTATGGCGTGTTGAGTT	
     21757	    36	 100.0	    30	....................................	AAGCCCGTAGCCTTATGCAATGAATAGGCT	
     21823	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        16	    36	  99.8	    30	GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT	                              	       

# Left flank :   GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGTGCGGTTTGCTGAAAGAAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG
# Right flank :  TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:55.56%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [-0.40,-0.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [1-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.68   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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