Array 1 183802-184195 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXL010000006.1 Erwinia amylovora strain 1680 Ea_1680_contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183802 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 183863 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 183924 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 183985 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 184046 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 184107 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 184168 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.5 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : | # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51-1725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXL010000003.1 Erwinia amylovora strain 1680 Ea_1680_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 112 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 173 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 234 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 295 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 356 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 417 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 478 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 539 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 600 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 661 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 722 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 783 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 844 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 905 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 966 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 1027 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 1088 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 1149 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 1210 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 1271 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 1332 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 1393 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 1454 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 1515 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 1576 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 1637 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 1698 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : GTGAGCGGGGATAAACCGACAAAAGACAACACCCCCCTTACCCCCCCACGG # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12633-14249 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXL010000003.1 Erwinia amylovora strain 1680 Ea_1680_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 12633 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 12694 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 12755 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 12816 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 12877 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 12938 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 12999 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 13061 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 13122 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 13183 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 13244 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 13305 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 13366 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 13427 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 13488 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 13549 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 13610 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 13672 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 13733 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 13794 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 13855 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 13916 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 13977 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 14038 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 14099 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 14160 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 14221 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCTCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 23713-24041 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXL010000003.1 Erwinia amylovora strain 1680 Ea_1680_contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 23713 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 23773 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 23833 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 23893 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 23953 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 24014 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //