Array 1 57372-58660 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVT01000013.1 Pectobacterium versatile strain NY1753B NODE_13_length_103660_cov_14.9302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 57372 28 100.0 32 ............................ ATACACCAACAAGCCGTTTGTGGGTTTCTATA 57432 28 100.0 32 ............................ GATATCGAGTGAGTTGATATAATCAGCAATCG 57492 28 100.0 32 ............................ ATCCAAACCCGTTCGCATCCGTATCTATCGAT 57552 28 100.0 32 ............................ CAAGGCAATAACAATACCAGCAGTGCTTTCTA 57612 28 100.0 32 ............................ TTACAACTCTGCATATAGCCGCTCGGAATCAT 57672 28 100.0 32 ............................ TCAGCCAGCGGGGAACATAACGCTGAAATGTT 57732 28 100.0 32 ............................ GTTGCATGGCGTAGATGTCACCATTGATATGC 57792 28 100.0 32 ............................ AACTGGCGCACTGGAGAACGTCCCGGATGCAA 57852 28 100.0 32 ............................ CAGTAGAGCAAAAACAATCTGACCCTGTAAGT 57912 28 100.0 32 ............................ CTGAAAGTTCGCCCGACGGTGCTTGTCGTACC 57972 28 100.0 32 ............................ TTCCCAATCCAAATCGCCATTGAGTGGGATAA 58032 28 100.0 32 ............................ AGCAGCGCACCACGGCGTTGAGCAAAGTATTC 58092 28 100.0 32 ............................ AAAACTTGATGGATTGGCTCTGGAGGTCGGAT 58152 28 100.0 32 ............................ TTCCCCAGAACGATGGCAAGAACGATGGCGCT 58212 28 100.0 33 ............................ CGCAGCTGGGGCGCTGGGTTCTGCAAAGTCCTA 58273 28 100.0 32 ............................ TACCAACATCCGGCATGGGCATGAGCAATCGT 58333 28 100.0 32 ............................ TTGAGAGGATGTTAGTTTATGCGTAGAACGCA 58393 28 100.0 32 ............................ TGGTACTTCGCTTTAACCAGATTCCCCTTCAG 58453 28 100.0 32 ............................ TGAGTGTGAGGCTAAGGAATATGAAATGATGT 58513 28 100.0 32 ............................ GTTGTCGCGCAGCCGGTGCGTAATCAAATGGG 58573 28 100.0 32 ............................ ATCGCAGAAAACGTGTTATCTGACATATCGCG 58633 28 85.7 0 ............GC......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.3 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : ATCCTGGCGTTCTGTCATAAAGTCAGCGTCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTATTACCGTTTTTAAAAACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGAAATTCAGCCAGCTACTTACCGTTTATTATTGCTGGCTAAAACATAAGCTAAGTATAGATATTAACCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGACCTATTGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGTTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAACG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAACTGGTAGTCTGTTTGGCTCACTGCCTGACACTGTTTAGGGAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCAGTCGGGTTGGAATGCCTAGGGTTAATTGAAGTGCGGTTGATCAACCATACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGATGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAAAACAAAAGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 66351-65540 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVT01000013.1 Pectobacterium versatile strain NY1753B NODE_13_length_103660_cov_14.9302, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66350 28 96.4 32 ................A........... TTAGATCGCGCCGCTGGCGTCAGGCCAAATTC 66290 28 96.4 32 ................A........... TGCTACTGGCGCAGGGTATTCAGTCCCCGGAT 66230 28 96.4 33 ................A........... AGTGCTCGGCGAGGTCATCTACGTATGAATCAT 66169 28 96.4 33 ................A........... TCGATCCCAAAAAAGGCAGCGCCACTGCCTACG 66108 28 100.0 32 ............................ TGATACTTATGCCACACGCGCTGATTGAAGTT 66048 28 100.0 32 ............................ AGAATGAAATAATATCGATAGTGCTCGCGACG 65988 28 100.0 32 ............................ AGGCACAATTCTGTTGTTGTTTTTCAGAGATA 65928 28 100.0 33 ............................ CATCTATGCTTTCACCTTCATTTATCTCCGTAT 65867 28 96.4 32 ............G............... ATACCGCAACGCCCAGCAGGATGAGCAACGCA 65807 28 100.0 32 ............................ TTGAACAGATTGCATGGTGCACAGGCTGGGAA 65747 28 100.0 32 ............................ AGGATTGGCGCTCACTATTCATGCCATTATCC 65687 28 96.4 32 .............C.............. CCTAAATCGGGATAGCGCATTGAGTACGCCGT 65627 28 92.9 32 ........T....C.............. TTTGTTCGTTCAGCGTCTAATGCCGCTATTTG 65567 28 78.6 0 ...........C.C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 14 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GTGTGACGGAGGTGCCGGTCCCCAGCATCACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAAGCTAATTATTTAATAAGAAAAAATGTAATCTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGATGCAGACCCTTTTTCTTTGGCCTATTTCACAGGCTTAACAATCAACGAGTTACCGCTGAGCCGAAAAAAAGGGTTTTTGCGACGAAAACGGCAATTGCTGCTAATAAAACAAATCGTTAGAGTGATCGGGCAACG # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTATTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTATGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAGGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCACGCCATATTGACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGCACACCAAATCCTAATGATTCTTGGAAAACGGCAGTATTTGGCTGTACCGATCCCATCTCGTCGTTTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGACAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 74924-75611 **** Predicted by CRISPRDetect 2.4 *** >NZ_WLVT01000013.1 Pectobacterium versatile strain NY1753B NODE_13_length_103660_cov_14.9302, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 74924 28 100.0 32 ............................ TATCTAAATCGGATGGTATCGGCAACGCGCCA 74984 28 100.0 32 ............................ TCCCGTTCTCTAACGAGACTCTAGCCGCCGAT 75044 28 100.0 32 ............................ GTCACTAACCAAGGCGGATTAATCACCGCTAA 75104 28 100.0 32 ............................ ACCCAGACGATGGAACAGACGCTGGCACTCAC 75164 28 100.0 33 ............................ CATCAGTTTCCGCTTTCGTCAACTTTCTTCCGA 75225 28 96.4 32 ...........T................ GATGGGTTCACGCCAAAATGCTGCTTAATCAT 75285 28 96.4 32 ...........T................ ATGAACCCTGATAGTTCACAATCTGGGTCGGC 75345 28 96.4 32 ...........T................ GCATCCAGTGATCGCTTATGTTCTTTCTCTCT 75405 28 96.4 32 ...........T................ AGTAAAGCTGTCGCGCGCGCTGCCTGATGAAT 75465 28 100.0 32 ............................ GCTGACTCCGCTCCGGAAAGTCTGGAGCATCA 75525 28 96.4 32 .............C.............. CCGTTCCACCAGCCGCAAGCCAGCCTAGCAGT 75585 27 75.0 0 ...........TGC......-..C..GG | ========== ====== ====== ====== ============================ ================================= ================== 12 28 96.4 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AAGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCCGCGTGTACAGCCATCCCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCCAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAATCTTAACG # Right flank : GCTTATCGGGATGCGTCGCTGACGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGACTGCCGCCGAGGTGTGCTTGATGAACACCTGCATCAGCCCGACTTTTATCTGACGCAGTGCGGTGACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATAGGTCGCAGGAAGCGCGCAGTGTGAGACTGTTCGCACTCCGCCACCGTTTCCGGCGTGCCGGAGACCAGAATTTCTCCGCCGCCGCTGCCGCCTTCTGGCCCTAAGTCGACAATCCAGTCCGCCGTTTTAATCACATCCAGATTGTGTTCAATCACCACGATGGTATTGCCCTGATCGCGCAACTGATGCAGAACGGTAAGAAGCTGCTGAATATCGGCAAAGTGCAGGCCGGTTGTCGGTTCG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //