Array 1 470255-470403 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJO01000003.1 Cronobacter sakazakii strain cro3040W contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 470255 28 100.0 32 ............................ CATTGCCTCGATAACCTGCAAATCCCCCTCAC 470315 28 100.0 33 ............................ AGACGCGCCGGAAGGGGAGTTGGTGCGCCAGCT 470376 28 89.3 0 .....................CGG.... | ========== ====== ====== ====== ============================ ================================= ================== 3 28 96.4 33 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGAATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAGCGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCATTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : ATCACAGCGAATTCCCTCGCCGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGCAAAACCACGTTTGCCGGTAAGAATGCCACGACCTGGGGGTATAACGGCTCGCTGCTTGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTGAATATCAATATCCGCAATAACCTCGCTGAAGAAAGCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGCCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCCGAGCAGCGCGCGGCG # Questionable array : NO Score: 5.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 519925-518797 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJO01000001.1 Cronobacter sakazakii strain cro3040W contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 519924 29 100.0 32 ............................. ATATCATCCCGTCCTGCCTGTCCGTTCACCGT 519863 29 100.0 32 ............................. AAAGACGGATCCGACATGCGCACGCGAAAACA 519802 29 100.0 32 ............................. CGCGATATTATGATCATCACCGGACGGCGCCC 519741 29 100.0 32 ............................. AGAAAGATCAAAATTGCCGGCAACCAATTCTT 519680 29 100.0 32 ............................. CAGCATAACCGGATCTGTCGTCTGGCCGTTCA 519619 29 100.0 32 ............................. GACTCGTTGCTTGTCATTCAGCGGGCATTCAC 519558 29 100.0 32 ............................. CAACGATTTATCCAGGACGAAGTACACAAAAA 519497 29 100.0 32 ............................. GTACCGCCGCCAGTCTGAGTTGTATTTCTGCA 519436 29 100.0 32 ............................. CGGCGGCCGGGTGCCGTGACTTATTGGGCGTA 519375 29 100.0 32 ............................. CCGAGCGCCTTTACATCCTTGCCAGTCGGCTC 519314 29 100.0 32 ............................. GTTAATTGCCCGCAGTGCGGGCACCTTTTTGA 519253 29 100.0 32 ............................. AACCCGGCACTGACAGCCGCCAATGAGTGTAT 519192 29 100.0 32 ............................. AAATCTGCATGTTCTGCGGCGAGCCAGCATCG 519131 29 100.0 32 ............................. TTGCCGAACGCCACCCAGATAATTTCCGTGCC 519070 29 100.0 32 ............................. ACGGCGACGCTTGTCAGCCCGCCCGAAGGCGT 519009 29 96.6 33 ...................A......... CGACGTTTTTACCTACACCGTGCAAATACTGGC 518947 29 100.0 32 ............................. CCGCCTGCGTCCTAACCGGCCTGTAGGCTTTT 518886 29 93.1 32 ..........TA................. CGGTGATGCACCTCGCCGCGATAGATGATCAA 518825 29 96.6 0 ........G.................... | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.3 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAACCCGCGGCGGACATGCTGCCGCCCGCGATACCGCTAGCCGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTCGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGTCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAATATATAGTTTTAGA # Right flank : ACGTAACCGGTTTTCGACACGGTGATCGGGGAGTATTCCCCGCGCGCGAATAACTCCTGACCGCCGGGCTCACCCTGCCTTTAAACTTTACAGGCATTACTGAACATGAATAAAACCATTTGCACCTTACTTACTACTGTCGCGTTGTGTAGTACTACCGCTGTTGCCAATGATGAAACGCTTGAACAAAAACCGCAGCAGGCCGCACTTAATTTTAATCGCTGGTATATAAGCGGCTTTCAGAATACTCATCAGGATCTTCTTGATAGCAAGCAGATTAGACATTACGTGACAAAAACAACGCTGGAGAAATTGCGGCGAGCCAGACCGAATGAAAATGAATTTTATGATGCGGACTTTTTCATCAAGGCTCAGGACATTCTGCCGGACTGGACTTCTCATATCGTCATTACGGATGTCGAGTATGACCCGGTTTGTACGCAGGTGTATGTGTCGTTTGGTCAAAACCCGGTACATGGGGTGATCGATTGTATGGTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 549073-546360 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRJO01000001.1 Cronobacter sakazakii strain cro3040W contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 549072 29 100.0 32 ............................. GAAAAACAGGTGGGTTTTGCCTGTGAGTGTGA 549011 29 100.0 32 ............................. CAACTCGCACACGTCAGCGGAGGAACGCGCTC 548950 29 100.0 32 ............................. AACCGGATAGACAGTTAAATACCAACTATCTA 548889 29 100.0 32 ............................. CCCCTTTGTTTTACCGAGGCTAAATGCCCAGC 548828 29 100.0 32 ............................. AACTTTCCCGCGATTACAGCCAGGTGAGCTAC 548767 29 100.0 32 ............................. AGTTGGTCGCCGAGCGACGCCGCCTGCCGGTC 548706 29 100.0 32 ............................. AATGACCAAAAAAACGCAGACTTTTTTCTTGC 548645 29 100.0 32 ............................. AGGGTTGAGGCATTCGTCATTGAGGCGCTCCA 548584 29 100.0 32 ............................. TACACCCGAGACGGGTTTAACAGCAGGTGGGA 548523 29 100.0 32 ............................. CGATGTGGGCGGCGGGCGCCACGCGCGTAACG 548462 29 100.0 32 ............................. GCCATGAGAACGCCAAAGGCATGTCCGTCACT 548401 29 100.0 32 ............................. CGTAACGAACTACTGCAATCCAGCGGTTATTG 548340 29 100.0 32 ............................. GCTTCCTGCGTTTTACTGCCTGATAAATCCTG 548279 29 100.0 32 ............................. CCCGCCGTTCTCGTATTTATTTTTAAATGCCG 548218 29 100.0 32 ............................. TCAGGCGGTGTCAGTGGCCGCCTTCACAAGCA 548157 29 100.0 32 ............................. CGCCTGCGGGCTGTGTCATTACTGGCGTGAAA 548096 29 100.0 32 ............................. CCGCTGGTGGGCGTGGGGTGGATATCCGGGCG 548035 29 100.0 32 ............................. CGCAATCCAAAAATACTGTATATTTGTACAGT 547974 29 100.0 32 ............................. CATGCGGCCATCGTCGTCAGTGCGCTGTATTC 547913 29 100.0 32 ............................. GCAAACTTTCAGTCACTGCAATCGCGTTTATC 547852 29 100.0 32 ............................. TCTGCCGCCCCGGTGCCCAGCGGCCGGACGTG 547791 29 100.0 32 ............................. CTTACCGCTGGCTGGCAGAGCAGCTCGGCATC 547730 29 100.0 32 ............................. GCTCATATTTTTTAAAATTTTTAATATCTAAC 547669 29 100.0 32 ............................. TGCTGTTATCAGCACTCGTCTGGAACTGGATA 547608 29 100.0 32 ............................. GCCGGAACCGGCGCGGAACTGAGGCAGGCATA 547547 29 100.0 32 ............................. ATGTGCCAGAAGTGAAAGCGGCTATCAAACGG 547486 29 100.0 32 ............................. GCTGCGCGACTCGCTGGCCCGTCTCGATACCA 547425 29 100.0 32 ............................. TCAGTTTCCCGGAGGCGAGCGCCCCTTCAAGC 547364 29 100.0 32 ............................. CATCGGCGTCGCTTGTTCGAGCGCGTCCATCA 547303 29 100.0 32 ............................. TTCGACGATCTCCCCGTCGGCGTGAATGTTCG 547242 29 100.0 32 ............................. GGTGTGAAGCTGTTAAGCGTTTTTGAAGATCT 547181 29 100.0 32 ............................. GAGGAACGCCGCCAATTTCAGGAATGTATTTT 547120 29 96.6 32 ..........................T.. TCGTCGAGGGTTATTTGCATGGCGGCTCGGGG 547059 29 100.0 32 ............................. CAGGCGCGCGGTTACGCCTGGGCGGAGAAATA 546998 29 100.0 32 ............................. ATCGCCTTCGACAGGTCGCCAGGTTCGTCGTA 546937 29 100.0 32 ............................. ATTAATATTCATCCTGAACCAGTTAACACCCC 546876 29 100.0 32 ............................. TGTACGGGGTAAGGCTGCACCGCATACGTGCG 546815 29 100.0 32 ............................. CCACAGCGCCGCCCTCGCCGGCGGCCGAGTAT 546754 29 100.0 32 ............................. GTGTGAGACTTTTGCGCTGCCTAACTTGATCG 546693 29 100.0 32 ............................. GGTCATGACGGAAGAGGATGAAGAGGACGCCG 546632 29 100.0 32 ............................. GCCATCGGACGCTTCTGCCAATCTTATCAGGA 546571 29 96.6 32 A............................ GCGCGACGTATCGCACCGTTGCGCAGGATACC 546510 29 96.6 32 .....A....................... TTTTCGAAATTGAGCATATTTAACCTATGATT 546449 29 96.6 32 ...........A................. ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 546388 29 93.1 0 .C.............C............. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.5 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATCGTCGCCAATATCAATATCAACTACCGTCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTCACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGATCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCTGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAAAAGTGGCGCGTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : AACGCTGAACTGGCGAACACGCTGCAAAATCTCCGTTTCCCGCCAGCCGTAATAAACCGCCCAGGCTCTTCGCGCCTGTCACTCGCCGCCCCCTTTCCCGCCACATTCTTCAGTAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCACGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCACCCTGGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGACGTCCGACACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //