Array 1 28454-30608 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAMY01000004.1 Nitrobacter sp. Nb-311A 1099473104515, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 28454 32 100.0 35 ................................ TGGCAGCATGTTGAGGCCCTGATCATTGTACTGCG 28521 32 100.0 35 ................................ TTGCGAGAAAACTCACCAGACTGACGCTCCCACAG 28588 32 100.0 34 ................................ TGCTAGACCAGAGATGGGGTGACCTTTACCCCGA 28654 32 100.0 35 ................................ ATTGTCTAACGTTGCGTAAATCATTGTCTTGCTCG 28721 32 100.0 34 ................................ TCCCATATGGGCAGACACTAAGCCGCACGACCTA 28787 32 100.0 34 ................................ CCGATCTTCCTCGGTCGTCCCACCATGATCCAGA 28853 32 100.0 33 ................................ GCGAACTGCGAGAGTTTGAGCGCAGAACGAGAG 28918 32 100.0 35 ................................ ACGATGGAAAACAACGTATGGGCGCGGACCTATTG 28985 32 100.0 34 ................................ CAAAAAGGAAGTGGTTGGGGGCGAAAGGCGGGAA 29051 32 100.0 34 ................................ ATCGCTTGAGCAGTGTGCATGAAGGAAAAAACAA 29117 32 100.0 36 ................................ TGAGGAACGCCACCAAGTATGACGCCTCGTTTATCG 29185 32 100.0 33 ................................ GTCCGTTCGGGCATCCAGGAAAGTGCGAGCACC 29250 32 100.0 33 ................................ TAGACGCGTATTACGCCGCATGGCTCTATGATG 29315 32 100.0 33 ................................ GATTTCACGTTCCTGTTCCGGCGTGATGTCGTA 29380 32 100.0 34 ................................ ATCAACGCAATGGCAGAGAGCCTTTCAGAGCGTC 29446 32 100.0 34 ................................ TCAACCGCGAATCTCTGAGTGTGAACGTACACAA 29512 32 100.0 34 ................................ ACTGGTGTCGTTGGCTGAATATCTCGATGACAAA 29578 32 100.0 35 ................................ AAACGCCACAAGGCGGGCAGTAGATGGAGCTAGGC 29645 32 100.0 34 ................................ GTGGTGACGCTCGATCTCGCGTGGATCTGGTCCG 29711 32 100.0 34 ................................ TTTGCTGGGGAGGGTTGACAGGCATTAGGGGAGG 29777 32 100.0 35 ................................ CACGTAACCCACAACTCGCTGTCTTCCTCGCGCAG 29844 32 100.0 36 ................................ CTGACACGAGAGGAACATCACGAGTCCCGCTTGAAG 29912 32 100.0 37 ................................ GATGCTTAAGCTAAAGCTGTCCCCGGATGATGTCAGG 29981 32 100.0 35 ................................ ACCCATGACATCCAGCGCGCGCCTTCGATCTTAGG 30048 32 100.0 33 ................................ AGCCTTACGTGCTGCTCCAACTGCGGGATAGTC 30113 32 100.0 35 ................................ TTCTCCTTCTCCGGACCGGCGAGACGGCGGACAGG 30180 32 100.0 34 ................................ AAATTCGCACGGTTCGTCTACGTGGTGATTGCCG 30246 32 100.0 34 ................................ CAGCTTGAAGGAAATGCCGTGTTTCTTCGCGAGG 30312 32 100.0 34 ................................ TGGTAGCCGCTCGTTCCCGCAGCCTCTCAATCAG 30378 32 100.0 35 ................................ AGTTTGACGCGGCGGGCAATTTGCGATTCCGGCAT 30445 32 100.0 35 ................................ TTGAATGAGGGCTATGAGATGGTCTCCGCACTGCC 30512 32 100.0 33 ................................ GTCGTATTTGTCAACGGTGCGCACGCGCTGCGC 30577 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 100.0 34 GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC # Left flank : GGTTTTGGAAATAGGAAGCCAGATGTTGGTGGTTGTGACCTACGACGTTAGCTTGACACAGCCTGGCGGTGCACGACGCCTCCGCCGCGTAGCACGAGCATGTCAGGATTATGGTCAGCGGGTGCAGTTCTCGGTGTTCGAAATTGAAGTCGATCCGGCGCAGTGGGCCGCACTTAAGGCCCGGCTCGAAGGCGTGATTGATCCCACACATGACAGCTTGCGCTATTATTACCTCGGAGCCAATTGGCATCGCCGGGTCGAACATGTCGGAGCCAAAGCCGCCGTGGATCTAGGCGGTCCGCTCATCGTGTGAGAGTAAGCGCGAAACACAAGCGTGCCACCATTTCCCGGGTGGTTCGCGACTACGGTAGCTGTTTGAAATCGTAAAAAGAATCCATTTGATGCTTGGTTGCATCCCGGGTGTAGTAGCTTCATTGGCCGTAGTTTCGCGCCGCTGGCAGTATTTCCCAAGATCGTGAGCCGTGTTAAGCGACGCCGGG # Right flank : CAAGCGCGCTCCGGGAACGCGAGAAGCCCATCACATTGGGGTACGGTAACGCCCATGACATCCAGGGTTGCAACTCCCTGCCTATCGTCATGGAGCAATGGGTAAAAACTTGGCGGCCGTCCGGAGATTCGTCTCGCCATTGCTCGACGCTTTCCGAAGATTGGCGAAGAGCGAAACTTCGTAGCCAGGGCGAACTTGCAAAATCGGAACCGCCCGAAGCCAACAACAATTGGCTCGGCATCCGAACAGAGCAATACGTAATGGGATATGGAGAGCTTGGTTCCTTCCACGCGCAACCCCCTCGATAGATCGAGCGCCGCGCAGAGTTTGGACGGAAACCGTCTGATCGGGGAGTCTGCCTATCCCCTGGAGCGAGACTAGATCATAGGCGCGCTTGGATTCAAGACCGGGTCGCCCGATCGGAAAAATATTTCAGTGCTCTCTGTCGGAGTCTTTTTGGAGCCTAGCTAGCGGTGGCCTTATTTGAAGATGCCCGCGTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 20665-21492 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAMY01000023.1 Nitrobacter sp. Nb-311A 1099473104501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20665 36 100.0 30 .................................... CTCGAACTTCGCGGAGTGCGCGACCAATAT 20731 36 100.0 30 .................................... AGATTGTCAACTTTGTTGATGTCGCCATCG 20797 36 100.0 30 .................................... CCACACTTACAGATAGAGCTTTTGGAGAAG 20863 36 100.0 30 .................................... ACGTAGCGCCATGATTAGCAGCACTGCACA 20929 36 100.0 30 .................................... TAAATCATCTGTGCAGCGAGGCACCAACCA 20995 36 100.0 30 .................................... AAGCCGCTCGCAGCGCGTATACGCCTCTGT 21061 36 100.0 30 .................................... CGCAGGCTCCGCACGTCAGCGTCATCAAGA 21127 36 100.0 30 .................................... TGAGTTCAACGGGATCGATCCATCGGCGGT 21193 36 100.0 30 .................................... GAAATATGTCAACTCGCGCTCTATTCCGAT 21259 36 97.2 30 ...T................................ TGAACCTGCTTGTTGCCGCGATCGCGGATC 21325 36 100.0 30 .................................... GGCGTCGCCAATGACACCCTTTATACCTCG 21391 36 100.0 30 .................................... TGGTGGCCGCATTGGTCGATAAGCGATGCT 21457 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 99.8 30 ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC # Left flank : ACGGCATCAGGCTGCGACAGCGCCAGGGTGCTGCACAAGCCAAAGCTGCTCAGCGACAACGGGCCGTCTTACATCGCGGCCGAACTCGCTGAATGGATCTACGCCAACGGTATGAGTCATGTTCGCGGAGCGCCGCTTCACCCGCAGACCCAGGGCAAGATCGAGCGCTGGCACCAGACGCTCAAGAACCGCATCCTGCTGGAAAACTACTTCCTGCCGGGCGATCTCGAACACCAGATCGAGGCCTTCGTCGAACATTACAATCATCGCCGCTATCACGAGAGTCTCAGCAACGTCACGCCGGCCGACGCCTACTTCGGTAGGGCCTCTGCCATCATCGAACAACGCGAAAGGATCAAACGACAGACAATCCAATTCAGGCGCTTGCAACACCGCAAGCTCGCCGCTTAACATCACCAACCAGAGGCCGACACTCCGCTAAATCAGGCAGCCATCTGCGCCAAATGTTCTGACGACGGACAGAGGTTATGGCTCCAACT # Right flank : CAATGAACCGCCCCGGGTTTGCCGGAGGCCGTTTGGTTTAAGTTATGCCGCCATGGCCGATTGTTCCAGCATGGCGTAGTAGCGTTGCTCGGCTTCGGCGGGCGGGATGTTTCCGATGGGCTCCAAGAGCCGTCGGTTGTTGAACCAATCGACCCATTCCAGCGTTGCGAACTCGACGGCCTCGAAGCTACGCCACGGTCCGCGTCGGTGGATCACCTCAGCTTTGTAGAGGCCGTTGATGGTTTCGGCGAGAGCATTATCGTAGGAATCGCCGACACTGCCGACAGACGGCTCGATGCCAGCTTCAGCCAGGCGCTCGGTGTACTTGATGGATACGTACTGACTTCCTCTGTCGCTGTGGTGTACGAGCCCGCCGCGATGGACCGGCCGTCGATCGTGCAGGGCTTGCTCCAGCGCATCGAGCACGAAGCCGGCGTGCGCCGAACGTGATGCCCGCCAGCCGACGATCCTGCGGGCATAGGCGTCGATGACGAAGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 22847-24599 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAMY01000023.1 Nitrobacter sp. Nb-311A 1099473104501, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 22847 36 100.0 30 .................................... CTGGCTCAGATGTTTACAAATTCGCGTTCA 22913 36 100.0 30 .................................... GCTGCGTGCTGCATCATGATGCCGCTGCCT 22979 36 100.0 30 .................................... TGGCGCTTATGGAACCCGTCAAAATCGGCC 23045 36 100.0 30 .................................... GTCTCTTGCTCGCACTGTAGGCCGATGCTC 23111 36 100.0 30 .................................... GGGTGGACCGACGCGACGGAAAATGGCTGG 23177 36 100.0 30 .................................... GCGTCGTGGCGTGGGGGAATTCCAGCGTCG 23243 36 100.0 30 .................................... AGATTGGGCTGGCTGACGCGCGCGACCTTG 23309 36 100.0 30 .................................... TTGGCGGGGGTCTTCGGCAGGCGCGGATCG 23375 36 100.0 30 .................................... GCGTCGTGGCGTGGGATAATTCCAGCGTCG 23441 36 100.0 30 .................................... AGTAGATCGCGACCACCTTGCCGTAGGCGT 23507 36 100.0 30 .................................... TCGGTTTCCATCCGGTCCCACACAAGGTCC 23573 36 100.0 30 .................................... TGCATGAGCTCGCCTGGCATCTGATTTGCG 23639 36 100.0 30 .................................... ATCTGGAAGTGAACTGACATTTCGTAGACT 23705 36 100.0 30 .................................... TGCGGCGGACATCAAGCCTTGGACTGTACG 23771 36 100.0 30 .................................... GCCTTCTCGACATCACTGAGCTGCCATAAC 23837 36 100.0 30 .................................... CGCGGCGTGCTGGTGCCCGCCCTGGAGAAT 23903 36 100.0 30 .................................... TGAAACCCGTTGCAGGGCATTTGATTTTCG 23969 36 100.0 30 .................................... GCCTTGTGCGCGAGATCGCGCACCGCGCCA 24035 36 100.0 31 .................................... ACGCATCAATGACCCATTGTATAGCCGTGTT 24102 36 100.0 30 .................................... AACGCGAAGCCCATTGACAGGGATGACTGC 24168 36 100.0 30 .................................... TGAAGCGGTTCGCTGTCGCTTTGGCGAAGA 24234 36 100.0 30 .................................... GGGTACGGGACCTTGAAGTCGGCAGTCGTC 24300 36 100.0 30 .................................... AACCTAACTAAGGATGCGCCCTCTCCTAAA 24366 36 100.0 30 .................................... TGAAACCCGTTGCAGGGCATTTGATTTTCG 24432 36 100.0 30 .................................... TGGTTCTCTTTCGCTGCTTGTTTGCCTGTA 24498 36 100.0 30 .................................... GCCGTGGCGTCGTACTCAGGGCCGATCGGA 24564 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 27 36 100.0 30 ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC # Left flank : ATGGGCATGATAGGTCGAGGGGGCGATCGACAGAACCTTGCAGATCGGCTCGACCCCATGCGCCGCGCGATGATCGTCGATGAAGGCGATCATGGCTTGGACCGGCGGTCGAGCTCCGCCGTCGCAAAATAAGCGCTTGCCTTGCGCAGAATCTCATTGGCTTGCCGAAGCTCGCGGTTCTCACGCTCAAGCGCCTTCAGCTTCTCCGCCACGTCCGTTGGGACGCCTGCTCGCTTGCCGCTGTCGATCTCCGCCTTCTTCACCCATTCCAGCAGGGTATGGCCGGAACAGCCAATCTTGGGGGCTATCGCCTCAATCGCAGCCCAGCGGGACGGATACTCGCTGCCGTGATCCAAAACCATTCGAACCGCTCGGGCCCGAACCTCCGGTGAAAACTTGTTCGTCGTCTTGCTTGTCATGGCTCCATCCTCTCAGGAGTTGGAGCCTCCGGCAAACCCGGGGCGGTTCACAAGGACGCGTCGAGGACGCGTCAGAGCCAA # Right flank : CAAGAACGCTTTTATCGGGCGGTTTGCGGACGGAATGAAATCTTGACCTGTGGTTCGTCCCAGTTGCATGGATTATCCATGACAACTTCGATAGGGATTGTATTTCTCGCAGCGTTGGTGACGGCAATCGCCACCGGATTAGGTGCGTTACCGTTTCTGTTTATCAAGCAGATGAGCCGGCGGTGGCTGGGAGTATCCAATGGGATTGCCGCAGGTCTTATGCTCGGTGCGAGCCATGCGCTGATTATAGAGGGAAGTGCGATCCACGCACCATGGACTGTTGCGGGACTCGTGATCGGTGCTTTGCTGGTTGCTGCGAGCTTTCATCTGCTACAGGGTCGCAGTGATCTCCACGTCGGTGAACTCAGAGGAGCTGGCGCCAGCAAAGCTGCATTGATCGTTGCAGTCATGACGCTGCACTCGATGGCCGAGGGAATTGGCGTAGGCGTATCATTCGGCGGAGACGAAGAGCTTGCGACTTTTGTCACGGGAGCGATTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ACGCTAGCAGTTCAGAAATCGCAGGCCAACCGCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //