Array 1 18900-20548 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATT01000010.1 Pseudomonas aeruginosa strain NCTC11450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18900 28 100.0 32 ............................ AGCATGGAGACGCAACCATGATCGACCCAGCA 18960 28 100.0 32 ............................ TTCAGAGGCTGATACGCCTCGGCCGCCTTGGC 19020 28 100.0 32 ............................ GATCCCGCTGAGCCGCCATCAGACCCCAAGGA 19080 28 100.0 32 ............................ TTGGCGATCAACTGATCAGCGATAGTGTTGTA 19140 28 100.0 32 ............................ TGAATATCGCTCAACCCTATGACGTCACTCGC 19200 28 100.0 32 ............................ GATGACGGCACGAAGTCCAGCATGGTCGGCAA 19260 28 100.0 32 ............................ GGCATCGACTCGCCGGACCTGCTGAGCCGGCT 19320 28 100.0 32 ............................ TTATGGAGCAAGCCATTTCATCAACCATGAAG 19380 28 100.0 32 ............................ TATATCCGGGCGCTCAGCACCCAGCGATATGG 19440 28 100.0 33 ............................ AGCGATCTCAAGGCCGGAGCCGAGCGCCAGCGT 19501 28 100.0 32 ............................ AGTTCCAAGTCGCCTCGGCGCACTGCAAGCAG 19561 28 100.0 32 ............................ ACCTTTCCTTTTGCCGGCAGCAGTCCAATCGA 19621 28 100.0 32 ............................ ACGCCTCATCCATCCAGTAGATGAAGCGCCGG 19681 28 100.0 32 ............................ CGTTTGGCACGGACAAGGTTCCGGGCTTTGAC 19741 28 100.0 32 ............................ ATGCAGAGGGTAGCTACTGCACGAAATTTCGA 19801 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 19861 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 19921 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 19981 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 20041 28 100.0 32 ............................ ATGAGCTGCCCCCTTATGCGCCAGTGCCGGTG 20101 28 100.0 32 ............................ TGTGATCGCCGCTACCTCCATCATAGAGAAGC 20161 28 100.0 32 ............................ AAGTTCCGGGAAGCGGTCGAGCCGAAAGCTAT 20221 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 20281 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 20341 28 100.0 32 ............................ AGGATGAACAGGTACAGCAGTCCGCCGAAGAG 20401 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 20461 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 20521 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 29944-29076 **** Predicted by CRISPRDetect 2.4 *** >NZ_UATT01000010.1 Pseudomonas aeruginosa strain NCTC11450, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 29943 28 100.0 32 ............................ AATGCGACGGCGAATATCGCCCTGCAATGGAT 29883 28 100.0 32 ............................ TGATCAAGATTCGCGTCGATGGCTGCAAGCTC 29823 28 100.0 32 ............................ CTTGACCTGCCGGGACTCCCAAGGGGCTGGGG 29763 28 100.0 32 ............................ TGCGCGAGTCCAAAGGCGATCCTGTTGGTAGC 29703 28 100.0 32 ............................ TCGCGGACTGGGATGAAATGCGTAAAGAGCGC 29643 28 100.0 32 ............................ TTTGCCAGAGCAAGGGCGTGCTCACGGCTGTT 29583 28 100.0 32 ............................ ACCCAGCAGCAGGCATTCATCCAGGCCGTGAA 29523 28 100.0 32 ............................ AGGTCTCAGCAGAGGCTAAAACGGCCGGCATC 29463 28 100.0 32 ............................ ACGCGATGGCGGAGACGGCCTGCTTTCAAGCT 29403 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 29343 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 29283 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 29223 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 29163 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTAGGGCGA 29103 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //