Array 1 273-14 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPT010000195.1 Synechococcus sp. PCC 7002 NODE_203_length_315_cov_1.398936, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 272 37 100.0 35 ..................................... TCAAGCGAGATACCCACCAGAAAGCCTATGACCTG 200 37 100.0 38 ..................................... GCGGCGGCTGATGTCGCCAATGCGGTTATCGATGGCCA 125 37 100.0 38 ..................................... TCCCAAGGGGGACAGGGCGGTGATCCTCGATGTTGAGT 50 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 100.0 37 GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Left flank : TGGAAAGTGATTATGTTCAAGAAATCACAACGCAAAAGAAAA # Right flank : GACTCGTCTATATA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA // Array 1 217219-218194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPT010000002.1 Synechococcus sp. PCC 7002 NODE_2_length_558344_cov_280.362716, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 217219 36 97.2 37 A................................... AGACGAACTCTCCGTTCCCATCGCTGATTTGCAGGTT 217292 36 100.0 35 .................................... ACGTAATCAACCTGGGGCGAATAATCTTTCATAGG 217363 36 100.0 37 .................................... TGAGGCGTTGAATGTTGTTGTTGTTCTTTGATTAAAT 217436 36 100.0 36 .................................... GGAGAATGGAGAAAGAGAACCACGCTTCACAGTTGA 217508 36 100.0 35 .................................... TAATGGGCAAGCTCGTGGGTTTCTTCTTGCCAGGA 217579 36 100.0 38 .................................... ATGGGGAGCTGCGGGGTATTTTTCACCCATTCCCAGAA 217653 36 100.0 35 .................................... CAGAGGAACTTCCGGTGGATGTCCTTGCGGAGTAC 217724 36 100.0 36 .................................... GGCGGCACTTGGAGCAGCTGTGGCAGTGACGGCAAA 217796 36 100.0 36 .................................... AGTAAATCCTCGAACATTGGCTTAGTATTTGAGTGT 217868 36 100.0 38 .................................... GCGACCAGGGTGCTGTAATCCGTTTCGTTTTTTAAGGT 217942 36 100.0 36 .................................... ACTTTCGAGAGGGCGTTAGCAATACAGGTTCTTCAG 218014 36 100.0 37 .................................... GACGATTGAGAGATAAATGGCTACGGAATTATGCCCA 218087 36 100.0 36 .................................... GGCGGCTGTGTTGGCGTAGATCCAGAAAAACTTAAT 218159 36 94.4 0 .......G............A............... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.4 36 GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : AAAAGCGTTGGCGTAAAGCTTATAAGCTCCTCGAAGGCTATGGGGAACGCATCCAATATTCGATTTTCCGCTGTTGGTTGACTCAGCGATCGCGAGAAAAGTTACGCTGGCAATTAGAGGAGGTGCTCACCAAGGAGGATGATCTTTTACTTATTCGCTTGTCACAACAATGTGTACAGGATTTACCCAAATATAACCGTCCGAATACTTGGCTCTTTGATGAACAGACATTTAAGGTACTCTGAAATGTTGCAAGCAATGGGGACTGTTTGGGGCGATCGCCTTTTTAAAATCGCTCAAAGAATTGGCTACTGGGCTTTTGCAATTTATCAGCAGCGGCTTAGATCCCTGTTTTTTCTGAAAACGCCTACCCTATCTAGGTTTCAGGAACATCCAATCAAGCTAAATTTTCTTCAAAGAGCCTCAGCTTGCTATGATTCACTAGGAACCTTGCAAAAGTTACCCAGAAGTCTTGCTCAGACTAAATTCTAGGACGCGCT # Right flank : CTTTAGGGCGTCTAAATCCCGGTTTATCGTTTCAATATTCATGGCTTTTCTGGCCTATATTTGGCCTAAGCCTTACGAGGGGACAGGCATCCCAGGCCACCATGAAAAAGTAAGCAAATTTTCCTTACGCTACCGATAGCGCAATGGAAATTTGACCTACACTGTAAATATGGCTCGAGGCAGATTTGAACTGCCGACCTTGGGCTTATGAGTCCCCTGCTCTAACCAACTGAGCTACCGAGCCAAAACCGTAAACGATTATAACTATAGCAACTGCTTGTGTCAAGGGCTTGGTTTAGGGTCATTGTAAATGTCCAAACTTGAGTACAAAACAAGACTAGCCGCTGCCCACATTAACCATGTCTAAATTGCCCAAAATTGACCGACAGCGGGAACACCAAGCCAACGAACGTACCTTTCTGGCCTGGTTGCGCACCTCAATCGCCCTAATTGGCTTCGGCTTTGCGATCGCCCGTTTTGGTTTTTTTGTGCGTCAAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 38615-40912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPT010000009.1 Synechococcus sp. PCC 7002 NODE_9_length_117107_cov_176.161831, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 38615 36 97.2 44 T................................... AAGCAGAGACAGGGATTGAGAGAACACCAGCAAACTCCTTATTG 38695 36 100.0 37 .................................... TTAGAGGGCTTCTCTTGAGCTTTGTTGGCGAGTAACA 38768 36 100.0 38 .................................... ATAAGGATCTATTAAAAGCAAATCAACATCTATTTTAA 38842 36 100.0 35 .................................... TGGTTTACTGCTGAGTTCTTGGTGACTTACACCAA 38913 36 100.0 43 .................................... ATGAGTGCTATGGGTTATCGATCCTATGATCAGCTATTGAACC 38992 36 100.0 35 .................................... TTTATTGTTAAAGCGTTGAGCTTCCTCAACAAGTT 39063 36 100.0 37 .................................... GGTGAAGGAGAAAAACTTCCCTGAGTTTAGTAAGGAG 39136 36 100.0 41 .................................... TACTGCAGAAGTCCGCTTTGGACCCGATGACTATCAAAAGA 39213 36 100.0 38 .................................... CAGAGATTGTAGATCATATAGACTTTCTATGGAACTAT 39287 36 100.0 42 .................................... ACAAGAAATGGCTGAATATCTTGATGAATTACTTTCTGTTAA 39365 36 100.0 40 .................................... TTGTAAAGATGACCCTACGGTTAAAGAATTTTCTAGAATC 39441 36 100.0 42 .................................... TTTTTTCAGTCACAATCAGAAAAATTCTATAAAGAATTGAGT 39519 36 100.0 40 .................................... TGAGAGAAGAGAAAAAGTATGTTCACGCCTTTGTACAAGG 39595 36 100.0 40 .................................... GAAACAATATCAGAGTCAACTCCAATAGGACCACCAAAGA 39671 36 100.0 39 .................................... TTACGGGCACGCCTGTGGCAATTCACCTTTGACGAAGTG 39746 36 100.0 36 .................................... AGATTAGCTAGAACCTCACGCAAGGGACTAAAGTGG 39818 36 100.0 46 .................................... CACAGTTGCGTAAGCTCTTGGTGAGACAACTAAAGGCCCATGCCAA 39900 36 100.0 40 .................................... TTTGTTCACCATTGACGCAGTATTGCGTCTGGTAAACTTA 39976 36 100.0 35 .................................... TGGAATTGTTGGAGTCCCCCCCACTTATTAGCGGC 40047 36 100.0 39 .................................... ATCGTGTTAGTCAAGTATTTATATATGATTACAGCTACT 40122 36 100.0 40 .................................... AATAGCTAATGATAGGCAGGGTTGCGTCTGCCTTACCAAC 40198 36 100.0 39 .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 40273 36 100.0 39 .................................... CCGATAGAACCCGACAATCATTTCCGCGTCTTGTTCAAT 40348 36 100.0 41 .................................... TTCTACCTGAACTGGAGCACTATCTCAGTGAAGTCAAGGCA 40425 36 100.0 41 .................................... ACATGTTTGATCTAACTAATGGTTTAGTTGATGTCACTCTT 40502 36 100.0 39 .................................... TGCTAATCTAAAAGGGCTATCAATTGAGATAGCCCTTTT 40577 36 100.0 40 .................................... TCGTCAAGAAGATTGGAGACTGGGTTATTCTCCAAATCGA 40653 36 100.0 38 .................................... TTCGGCTAACATGTGAACTGGCAGGGCGTGAGCCCATA 40727 36 100.0 39 .................................... GTCTGAGTTGGATAAAGCTGATTGGGATATACAGAATCA 40802 36 100.0 39 .................................... TTAGCACTCTTCGTATTCCCTCTGAAGTTCGCAAGGTGG 40877 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 31 36 99.9 39 GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Left flank : CCTAGGGAAAGGCTCCGGGGAAAACTATCAAAAGCCAATATCTAATGCAAAACCCCAAAACTCTAGCTAATCAGCAATAAAGCCGAATTCTGGGGGGACTAAAATTATTTTCTTTTTGTTGATTTGTGGTGCAAAACAATCTAAGGGGCGATCGCCTTTTGAATTTTGCCCCCAAGAACCATTCCAGCAGCCAAGCTTAGGGTTGGCGATCGCCTAATTTCCCAATGCTATAGACCATGGTCATGGCACACATGAGCGCCCAAGTACCATCGAAACCGACGTTAATCCGGTGGCGCAGTTCGGCTTGGGGTTGATTGGCCTCCACTGCCTTAACCAGTTCGACGTAATCGCGGTACGTCCAGTAGCAAAAAAAGAGTGTCAGCCCGAAGGAAGAAGCGGCAAAAAAACGAAAGAGATTTTTAATCATTGATTAATTTTGAATGGCTTTGCTGAAAAAAAATGGCGCGCCTAAAGATTAGTTGGCTACGCCATATCCATTA # Right flank : CCGCTGGCCTTTCAAAGGCTTGTCCGGAGAGAACTCCAGCGAGCATTTGCGACCGATAGCAAAATTTTACCAGGCTCCAACAGAAAAGGCCAGAAAAAAATCCCTAAAACCCTTATCAGGTAAGCTTTCGAGCAATCACATGAAGTTAATACTGTTTCAGCCATTTTCTAGATCAGTCGCTAAATAATCGTTGACGAAGGTGGATCGCTCAGAGAAGGTGACCCCCAAATTTCCACCTGAGAGAGAGTATGACTCGAAATCGGATAAAACCGCAAACTGTCCCCTTGATCCTCTTTGTAATAACGCGAAAGTCGTTTTTTCAACTCTTTATACTTTTTGGGCGATAAATGACACTCAAACACAGAATATTGAACACGTACCCCATAACCTTCCATTAGATCCGCGATCTTTTTGCGACGCTTATCATCACTAATGTCATAGGCCACCAGATAAAACATCAGCGGATTTCGTAGGGAGCATAACCTAATACCGGACGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 14641-17592 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPT010000015.1 Synechococcus sp. PCC 7002 NODE_15_length_26485_cov_280.348168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 14641 37 100.0 36 ..................................... ACCCAGGCGTTGGCGCTGTTTTTCGTCTCAAAGAGG 14714 37 100.0 34 ..................................... TTTTTATCGAAGCAACCGTGATAGATCGCGTTGG 14785 37 100.0 35 ..................................... CAGGATGCCCTTGCAGCGATTGAGGCGGAACAGAA 14857 37 100.0 34 ..................................... TTGCTACCGCCTGGGCCTGAATCGCTACGATTGA 14928 37 100.0 36 ..................................... CGCCATCAAGGCAGACCATGACCGACCAAACCAATC 15001 37 100.0 36 ..................................... AATTCACCCGTAGTGGTCACATCATTGTGCTGCGTG 15074 37 100.0 35 ..................................... AAGGATAAGCAAGTTTGGCTTGCGACTTGGAAGGA 15146 37 100.0 35 ..................................... GCCTGCAATTCTCCACAAAACAGGCTACTTTCCCG 15218 37 100.0 34 ..................................... ATCTCTGTAGTAATCTCTGTATATATAGACGAGT 15289 37 100.0 38 ..................................... ACGCAACATCGAGGATCACCGCCCTGTCCCCCTTGGGA 15364 37 100.0 38 ..................................... TGGCCATCGATAACCGCATTGGCGACATCAGCCGCCGC 15439 37 100.0 35 ..................................... CAGGTCAAAGGCTTTCTGGTGGGTATCTCGCTTGA 15511 37 100.0 36 ..................................... TTTTTCTTTTGCGTTGTGATTTCTTGAACATAATCA 15584 37 100.0 33 ..................................... CCGTCCTGGCGATGGTTTCGGCGCGACGTTCCG 15654 37 100.0 35 ..................................... ATCACGGGGATTGATGATGAAACCTTGCGAATCGG 15726 37 100.0 34 ..................................... CAATTTTTCTTTATCCCACCGCTGAATCGCACTG 15797 37 100.0 34 ..................................... GAAGATTTGCCGCAGCAGTTGGCGAAAGCTAGGG 15868 37 100.0 34 ..................................... ATTAGCGGCGACTACGTTTGCGAGACGGAGACCA 15939 37 100.0 33 ..................................... TTAAGCCTTGAGAAACAATTAGGACAGTTACGC 16009 37 100.0 37 ..................................... TGCCACAAGCTACCAGCGGCGACCAGGGAAAATGCTT 16083 37 97.3 36 ......................T.............. AGATGATTTAATCAAACATCGATGAGAGAAGGGCAT 16156 37 97.3 39 ......................T.............. GCAGCCCTCGCAAGTCGGTGGACAATCAGCGACGAAGTG 16232 37 97.3 37 ......................T.............. ACTAGACCCTATTCTCCAAACCTTACGGAGCGTCCCA 16306 37 97.3 37 ......................T.............. AGGACGATAGCGATGGCCCCAATGCAGACCCCAATGA 16380 37 97.3 37 ......................T.............. TATGAGGTGGCCTGCGATTTGCTCTACTGCCTCGATG 16454 37 97.3 37 ......................T.............. CAGATCGCAGTCAGCAAAACAGCCAAACTTCTCAGGG 16528 37 97.3 40 ......................T.............. GTTAAATTCTCCAATCCGAGAACGCTGGCAACGCCATCAT 16605 37 97.3 37 ......................T.............. AAGTCCCGATAACAGTCAACTCTATAAGCAAATCTAG 16679 37 97.3 34 ......................T.............. GCAAGTGATATGCACCACCTCCTTCATCTTACTG 16750 37 97.3 37 ......................T.............. ATGAGCCCAACATGAAACCATTTCACTCCCCTGCCTA 16824 37 97.3 35 ......................T.............. AAATCACGAATTACCCCCTTGTAAGCCTTGTCGTT 16896 37 97.3 36 ......................T.............. CACTCAAATTGCACCCTCTGAAATTAATCGAAACGG 16969 37 97.3 36 ......................T.............. TTTCTCCCCTTGGCGCTCTAATTTGGCCCATGGCGA 17042 37 97.3 38 ......................T.............. AGGGCATCGCCTTTTCTATTAGGACTATGAATAAAAAA 17117 37 97.3 35 ......................T.............. GCTGCAATGATGGCGGAGATTAACAAAAAGGCAAA 17189 37 97.3 36 ......................T.............. AATTGGTACTTCGGATCGCATCAAAGTTGTTCCCGC 17262 37 97.3 42 ......................T.............. TTCAATCACGGCGGCAGGAGCCGACCTTGGTGACCTCGCCGA 17341 37 97.3 34 ......................T.............. AAGAAAAAATGGGGGCTTTGATTTTTGTGGCAGA 17412 37 97.3 34 ......................T.............. AAGACCCACGGACGGGGATATCTTGGGTGGGCTG 17483 37 97.3 36 ......................T.............. TTGGCTTCCGCGTTGCTCACGTTTGCTTCAGTGGCG 17556 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 98.6 36 CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Left flank : ACTCTCTTTTACCTGATCATTTACGATTTACCTTCTACAAAGGCAGGGGATAAGCGCCGAAAACGCTTGTTTGATTTATTATCGGGTTATGGCACTTGGAAACAATTTAGTGTTTTTGAATGTTTTCTGACGACAAAGCAATTTGCAAAATTACAAACTTCGATAGAAAAATTGATCAAACCAGATGAAGATGCTGTCTGTATCTATATCCTTGATGCCACTGCTGTTAAAAAGGCGATCGCCTACGGTACATCTACACCAGAAAAACCAGGTAGCATCATTCTTTAGATTTGACCTAAAATCAAGTTGGCAAACCCATAGCGTGACCAAAAACCCTAGGGACTTCGCCAAAATCTCTAGAACCTTGAAAATTCAATACTTTTCGATACTTGAAGGTCAACAACTTGCGTGGCGATCGTTGGTAAAATCAGATTCATGGGGATACATCTGCCAAATAAGCTTCGCAAAGCTAGGTATCGTCAGGTTTCTGGATCGCGGGC # Right flank : CATTTGTCCACGTGGCAATGTATGGCGATAGTTACCACTTTATTAACCTGGACAACAGCCCTGGAAGTTGTTATTAAATACTCTCATTTTGAGAGTATTCGGTTACTATTGGGGAAAAGGACTATATGCACTTAATCAGCATCAGCAAACTAAGGCAAGATGCAGCCAAATACTCTGATAGTAAATCAGCCCTAGATGCTTGGTATGCAGTGATCAAGCAGGCCCAATGGCAAAATCTAGAAGAGGTTCGGAAAACCTATCGAGACGCGGAGGCCGTCGGAAATTTTACTGTATTTAACATCAAGGGGAATAAATATCGCTTAATCGTTGGCATCGACTACCCATCTCAAACCGTTTACTACAAATATTTTTTGACCCACGCTGAGTACGACAAGGACACTTGGAAAAATGACCCCTACTTTAGATAAACAAAACTATGCCCAACTTCTAATGGATGCTATGCCCAAGGTCATCGAGACTGAAGCTGAGTATGAGCAGAC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Alternate repeat : CTTTCCAACCACTAAATCCCGATTACGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //