Array 1 3248135-3243242 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP046329.1 Shewanella putrefaciens strain FDAARGOS_681 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3248134 28 100.0 32 ............................ TCAACCAAATCATAAATTGCGCGACCACATTG 3248074 28 100.0 32 ............................ CTGCGCCTGCTGCAGTTTCAGCACCACCTATG 3248014 28 100.0 32 ............................ TATTGAGTTTGCATCAAGCACGGTATGGCGCT 3247954 28 100.0 32 ............................ TATCGCCCAGCAAGACGCGCAAACCTATAACC 3247894 28 100.0 32 ............................ CGTTTCAGGCGCAAAGGCGGTCCACTCGTTAT 3247834 28 100.0 32 ............................ GTAACGATTTTCCCAATAAAACTCTAAAAGCC 3247774 28 100.0 32 ............................ GCTTACTGCGTGGCGGTGCCTATCCGCTAATG 3247714 28 100.0 32 ............................ TTTGTTTCAAATGTCGTAGCAGACTTTTGGTA 3247654 28 100.0 32 ............................ ATTCAGTGTGAGGCGTTGGAAATCTACGGCCT 3247594 28 100.0 32 ............................ GCAATGCTCGACTTTTTCAAAAGACATAAAAC 3247534 28 100.0 32 ............................ TTCTAGATGCGCGTCTAACTCTTGCAAGTAGC 3247474 28 100.0 32 ............................ TGATTTAGTCATTATCGCTGACACTGAGCGAG 3247414 28 100.0 32 ............................ CGTTATGTCTGTTACACTGTCAACTTCCAATA 3247354 28 100.0 32 ............................ ATGAATGCAAAATAGATCTTGGTGGCGCGACA 3247294 28 100.0 32 ............................ GTTAACAGTTGCTGGCAACGTCTTTTGCACCT 3247234 28 100.0 32 ............................ ATATCGAAGTCATCGGTTGGCAGCACTGTGTT 3247174 28 100.0 32 ............................ CTTGAGCATCGCTTCAACGTCTTGACTAATAT 3247114 28 100.0 32 ............................ GTATAGCAGCAGAGCAGGCAGAGGCAAAACGA 3247054 28 100.0 32 ............................ ACTTGTGTGGGCGATATTGGTTAGGCTTGTTG 3246994 28 100.0 32 ............................ GCAGGGACTCGCGCAAAGGCTGGCGTTATGAG 3246934 28 100.0 32 ............................ TAGTTGCTAACATCGTTGCTCGCCAGGGGATG 3246874 28 100.0 32 ............................ TTTATCATCAAATATTTCTTCTTGCTCGTACC 3246814 28 100.0 32 ............................ ATAGAGATAAGCTATAAAACTGGCATATCCAT 3246754 28 100.0 32 ............................ TGTAGATAAAACACTGCTTACAATAAAACTCA 3246694 28 100.0 32 ............................ ACGATTGTCTTTTGCTATTAATTAGGATGTAG 3246634 28 100.0 32 ............................ GTCTGCATTTGCTGCTATTGATGTTTCTGCCG 3246574 28 100.0 32 ............................ TGGCATGCATATATTGATATCAAAATTTGCAA 3246514 28 100.0 32 ............................ TACTTATTAATCCCGCATCAGGTCGAGCAAGC 3246454 28 100.0 32 ............................ TTCTTCTGTTGGTTTTGTTGTTTCTCCTATCT 3246394 28 100.0 32 ............................ TGTTACCGATGAAGTTTTTTTTCCTTCTTCTG 3246334 28 100.0 32 ............................ TTCTTCTTCTACTTTGCTTGATGATGCTGAAA 3246274 28 100.0 32 ............................ TTAGGATTAGCAAAATAAGTAAAATGTAAATT 3246214 28 100.0 32 ............................ TGTTAAGCTGTCTAATGCAAAGTCGTTTGGCG 3246154 28 100.0 32 ............................ TGTTGGATTTGGCTCTTGGTTCGGCGCTTCGG 3246094 28 100.0 33 ............................ CTTACAGTTGGTGATGCATATCGCGATCCACGC 3246033 28 100.0 32 ............................ TTCTCTTGAAGATAAAAAAGTTGATGATGAAC 3245973 28 100.0 32 ............................ TCTAATGTTGTAGGCTTCGATGTTATGAGCTA 3245913 28 100.0 33 ............................ CAGAAGAACAAGCGGAATGGTGGGATAGTGGCT 3245852 28 100.0 32 ............................ ATTTAACTACTCGGCTGAATAAACTAAACGAT 3245792 28 100.0 32 ............................ GAATACAGCTAGAATTTCGGCTGGCGTTATTT 3245732 28 100.0 32 ............................ TTAATAATCCCCAAAAAAAAGATAGCATTTTG 3245672 28 100.0 32 ............................ TTTAAGCAACAGATAAATGACGTGGCATTTGA 3245612 28 100.0 32 ............................ TAACATTATGCAGACCAATCAACGGGCGATTT 3245552 28 100.0 32 ............................ GAAATCATATTGAAGTGGTAAATCAGGCGTAG 3245492 28 100.0 32 ............................ ATAATTCTGTGAACCTTGGGGAGTTTTATAAT 3245432 28 100.0 32 ............................ TGCTTCTTGGAGTACAGATACTTGGAAGTTAA 3245372 28 100.0 32 ............................ TTTTATTTTAAGTACTGATGAACACCCTTTAA 3245312 28 100.0 32 ............................ GCTCGTCATTTCGCAGGTCTTTGTTCTTTTTC 3245252 28 100.0 32 ............................ TACAGTTAATATACCATCTTTATTAAATACAT 3245192 28 100.0 32 ............................ TTAGTTACAAAGTTACGGGCTGTCTGTCTAGT 3245132 28 100.0 32 ............................ GAAACCTGATACATAAGATTTCATGTATGGAT 3245072 28 100.0 32 ............................ ATAACCGCCAGTCTGGGCGTTTCCTATATCAA 3245012 28 100.0 32 ............................ TTAGATTTTTCAGGTTATCAAGACATAGATTT 3244952 28 100.0 32 ............................ TTCATTTGCCATAAGTGTAATTAAGGTTAATA 3244892 28 100.0 32 ............................ TTGTTTGAATATTTTCATATTAGTTTCCAAAT 3244832 28 100.0 32 ............................ AAACTCATGCTTTAGCTTATCACCAACCTTTA 3244772 28 100.0 32 ............................ AGATTCGCGTAACTGGTACGTAATACCGTTAA 3244712 28 100.0 32 ............................ TTCACTATTACACGAGGCCGCAATGACCACTA 3244652 28 100.0 32 ............................ TTATGCTTGCTTCTTTAATTCAGAAGAATGTG 3244592 28 100.0 32 ............................ TTTGCTCGCGTTTCTTTTCCTAGCAAAATCTC 3244532 28 100.0 32 ............................ TGACACGATAGTAAGTCGCGAGGATGCCGAGA 3244472 28 100.0 32 ............................ TGTAATACCTGAACCAGTAAGTGCCACGAAAC 3244412 28 100.0 32 ............................ TTTGCCCGCTGATTCGGGTATGTTCACGAAAT 3244352 28 100.0 32 ............................ TGTTGGTACGTTATTGATAAAGGCTAACAGAT 3244292 28 100.0 32 ............................ GATCACGGTATGCAAACCACCGTGCGCTAACA 3244232 28 100.0 32 ............................ TGTAGCTATTGAATTATAATTTCTAACATATT 3244172 28 100.0 32 ............................ AACTGCAGTTGCAGCTCTCGCGCTAGCTCTTG 3244112 28 100.0 32 ............................ TTAAACAACTGGACTGAAACAGCAAAAAAAGA 3244052 28 100.0 32 ............................ TTACAATAATCTCAGTAATGTTTTTCCATTTA 3243992 28 100.0 32 ............................ TGAACAGACAGAAGAAAACATCACAATGGATT 3243932 28 96.4 32 ..............G............. ATCTTTATTGGTTGGCAAGTGCCGTGAATTGG 3243872 28 100.0 32 ............................ TGATGTTTTGACTATCGAGAAAAGCTTTGCAA 3243812 28 100.0 32 ............................ TTCTTACGTAATCGGAGAAGCGCAAGAAATAT 3243752 28 100.0 32 ............................ TGACATTTCAGGGCAAGTTGTTAGCTTTCCAA 3243692 28 100.0 32 ............................ TGATTCTGTAAACATTGCCGCAGGACTTGGAG 3243632 28 100.0 33 ............................ CTTGGCATGTCTATGTTTACGATAACGTCTAGC 3243571 28 100.0 32 ............................ TTCTTTTGAAACCACCAAGTCGCAGCAATTCT 3243511 28 100.0 32 ............................ TAGAGTTAGGCATTAAATACTGCTTGTTTCCG 3243451 28 100.0 32 ............................ AATCATTGCATTGGCTCAGATAAACCGAGCTG 3243391 28 100.0 32 ............................ AATAAACTGATCTGTTACTAATCTTGATGGAT 3243331 28 100.0 32 ............................ GTAAATCTGAATAGCCGCACACGCGGCTTTAA 3243271 28 92.9 0 ..............T...........T. | TG [3243247] ========== ====== ====== ====== ============================ ================================= ================== 82 28 99.9 32 GTTCACCGCCGCACAGGCGGCTTAGAAA # Left flank : GAGTTTATTGCATGATTTACAAGGCCTGGATTGGTTAGGCCCTTTGGCAGGATATTGTCAGGTTACTGCTGTTTCTGCCGTGCCTGATCACGTGCAATATCGTATTGTTTCCGTTAAACGCAGTAATTTAAGTAAAGCAAAATTGAAGCGTTTAATTGCCAGAGGCAGCATAGATAAAGACGGAGAGAAACGGTACAAGGTAAAAATGCTCGGCCAAGGATTTGATAATCCATATCTTGATCTGTTTAGTAGTTCCACAGGGCAGGTATATCGTAAATTCTTTGAGTTTAGCGACATTCAAGCTCACCCCCTTGATGGTGAGTTTGATAGTTATGGTCTTAGCAAAACCGCTACAGTACCTTGGTTTTAACCCTTTATTTTTGTTCTTTAAAAAATTATTTGTAAAACAATGAGTTATATTAGGTGGTTTTTCAATAGGTAAAAAAGTAAATTTTTATCTATCTGCCTGTTGTAACTTATTTTTTTGAAGATATTCTATT # Right flank : TAGCGGTAAGGGTGAGTGCTAATATTGGCGTTAATGTCGTTGTTAACTTGTAGTCTTATCTTAAATCAGCATAATGCTTCGAACTCCCTTTTGACTTTAAGCCTAGTATTGTGATGTATGGCGTCAGCTAGAGAGTGCTAGCCCATATCGGCTATTGATGAGTTCAATAATTGATTACGGCCTTACGATACTTTTTGAATATTTTATAACACCTTGATAAAGGATAGATTTCCCCTTTGACTCGCTCCCGCCAATCAACCACTCAAGCCTCAGTGGTTAAGCCTTTAGCCTCAAACGGTTCTGTATCGGTAAGTCGACTCTCGACTGAAGTGCAACGTGCATTTTTGCAAGGAGGGGTATTGTCGACGCATATTCAAGGATTTAGTGCTCGGGAAAGTCAAATGCAGATGGCACAAGGGGTAAGTGAGGCCATTGCATCTAAAGGTAATTTAGTGATTGAGGCGGGCACGGGGGTTGGAAAAACCTTTGCCTATTTGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.20,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //