Array 1 115049-112152 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSW02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0373 NODE_2_length_600150_cov_45.837685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115048 29 100.0 32 ............................. GGAACTGGTCAGCGGCGAAACAAAATCCGTGA 114987 29 100.0 32 ............................. CTATCGGCAATTTTCATCAGGCCCATTGCAAT 114926 29 100.0 32 ............................. GCGTCCAGCATTGCGCTAATAAAACTGGCCTG 114865 29 100.0 32 ............................. CCGGTCATAACAAGTGGCTTCGACGACCCTTT 114804 29 100.0 32 ............................. ATTGACGATTTTTCGTTAATAACGTCGTTATC 114743 29 100.0 32 ............................. TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 114682 29 100.0 32 ............................. CCCTCGCGCAAAAAGCGGTTGCTGTCGTTGAC 114621 29 100.0 32 ............................. AATCTGCCAACAGGCGCTCTGTGTATCGGCGC 114560 29 100.0 32 ............................. CTCCCTCTCCGCGTTTTTGCGTCGGCTGGGGA 114499 29 96.6 32 ............................T TTACGAGTTGGACGGTGAGTTTTATCACCGCA 114438 29 100.0 32 ............................. ATCCGCAGCATTACGTTGACGAACAAGCGAGA 114377 29 100.0 32 ............................. TTTCCATTTTAACACCTGCTTAATTAAGAGAT 114316 29 100.0 32 ............................. AGATTTTGCAGTGAACCACGACCGATGACGGA 114255 29 100.0 32 ............................. GCGTGTAAAATCACAGGCCGTCAGCCTAACGA 114194 29 100.0 32 ............................. CTGTCGCAAAAGCGGGTCTTATGTCTGCGGGT 114133 29 100.0 32 ............................. CCCCTGAGCGTTCAACGGCAAATAGCGGACAC 114072 29 100.0 32 ............................. TATACAGGGCGTTACCCCCAATCGAGCAGCGC 114011 29 100.0 32 ............................. GGGATCGGCGTCTGTGAAATTCTGTGGAATAC 113950 29 96.6 32 ............................A ATATTTAAAGATATGCAGAGAATTCTTTTGGC 113889 29 100.0 32 ............................. TGCGAATTTACCGTCGGCAAAACCGCGCTGAT 113828 29 100.0 32 ............................. CCAATATTCTCCTGATTATTCCGTTTATTTCC 113767 29 100.0 32 ............................. GGTTCACTCAGTGGAGCCTTCCACCTGATAAG 113706 29 100.0 32 ............................. ACGCGAACGCGGATATAAACTCAACAGCGCTC 113645 29 96.6 32 .............T............... AATTCCGTTACTATCTCGACGACCCGCGCGCG 113584 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 113523 29 100.0 32 ............................. CGGGGTTTGCCAACGGGGGTTATCTGGTATTT 113462 29 100.0 32 ............................. TTGCGCGCTGAGCGGGCAGAGTTACAGGAACG 113401 29 100.0 32 ............................. GCCGTCGCGATGGCATCAGGCGTGGTGGCCGT 113340 29 100.0 32 ............................. ATCGAACAGATGCGTCATAGCGGCATGGGCGT 113279 29 100.0 32 ............................. CTGAATAAACCTGTCCAGCTTCTGCCACTCTT 113218 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 113157 29 100.0 32 ............................. ATTACGGGATAATAGTTTTGGTAATGGGTTGC 113096 29 100.0 32 ............................. CCGCCAATATAAAGAACACTTTTATTTAAATA 113035 29 100.0 32 ............................. AATTCCGTTACTATCTCGACGACCCGCGCGCG 112974 29 100.0 32 ............................. GGACGAAAACGACGTCCGTTGCGTGAAAACCC 112913 29 100.0 32 ............................. AAAGCGAACGATGCGCTGAAAACGACAAAACA 112852 29 100.0 32 ............................. CAGTGAAATAAAACCAACGCACTGGGTATCCC 112791 29 96.6 32 .......T..................... CCCACCGCCCAGCCCGGATATAGTGAACTGGT 112730 29 100.0 32 ............................. AATAACTCCGTCGAGGTTGAGCGCGTTCTGCA 112669 29 100.0 32 ............................. ACTGGTATATCACCAATCATGAGCAATTCTGG 112608 29 100.0 32 ............................. ATTTGCCGCTTCACTAAACCGCGCGCCGGTGC 112547 29 100.0 32 ............................. GTCTGGCCGGATGTGGTCGCGGGTTGGAACAG 112486 29 100.0 32 ............................. TACGACGTCGCCGGGGTAATCGGTTTTTTGTT 112425 29 100.0 32 ............................. ATCGCCGTGTTGGTCAAATATATGACGACTAA 112364 29 100.0 32 ............................. TTTATCGAAAATCAATGTTCAACTCATTGTTT 112303 29 96.6 32 ........G.................... CCGGAAAACTATCTCTATCGCAGGCTGGATAT 112242 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 112181 29 96.6 0 ............T................ | A [112154] ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCCCCTCAGCCTGCGTCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGACTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGGGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGATAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCTGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132439-131800 **** Predicted by CRISPRDetect 2.4 *** >NZ_VCSW02000002.1 Salmonella enterica subsp. enterica serovar Derby strain HIY0373 NODE_2_length_600150_cov_45.837685, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 132438 29 100.0 32 ............................. AGCACCTCGGGGACGATATTATTGGGACTATA 132377 29 96.6 32 A............................ GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 132316 29 100.0 32 ............................. CCTGATCGCCAATATCTGAATATGATTTATTC 132255 29 100.0 33 ............................. TGCCGCGTGTCCGCCCCGTTGTCCAGCATCTGC 132193 29 100.0 32 ............................. AGTTGAGTAAAAAATCATGACATCACGCTACA 132132 29 100.0 32 ............................. CCGCGCTTATTGATCAGGAGAAAATAAAAAAA 132071 29 100.0 32 ............................. GGTCCGGTGTGGTCTGCCGAACCCGGCACCAG 132010 29 96.6 32 .................G........... ATGATGCGCAATTGCCGCCGTCGTCGTTGAGT 131949 29 96.6 32 .................G........... GAAGAGGCGAAGTCAGGGCGAGAGAGGCTTTG 131888 29 96.6 32 .................G........... TGTCGGTGTAAGTTGCTAAATACTCAGGTAAA 131827 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTGTTCCCCGCGCCAGCCGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAACGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAATTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATTCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCCGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //