Array 1 31709-35728 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRHB01000019.1 Clostridium perfringens strain 79385-4 19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 31709 29 100.0 36 ............................. TAGGAGTTTTTGTATAATTTCTTATATGGGAAGTTG 31774 29 100.0 37 ............................. ATTTCCACATCATTAATGGTGGAAGGTAAGGGATTCG 31840 29 100.0 36 ............................. TTAATAATAAAAAACGTAAAAAAAAAGAGAGTAAAA 31905 29 100.0 37 ............................. TTCTTTGACTTAATAGACTTAGAGTTTTTACTACAAG 31971 29 100.0 37 ............................. AGATGATCTAACTCCAGTTAGAATTCAAGTTTGTCAT 32037 29 100.0 36 ............................. ATCTAAATTCATCTGTTATAAGAATAGTAGAACGTA 32102 29 100.0 36 ............................. TGAATATGTGTATTCATAAGTATTTTCTTTTAATTT 32167 29 100.0 36 ............................. CATGTGTTTTCTTTTTAGACATTACATTCTCACCAT 32232 29 100.0 36 ............................. CATTTTGAAGTTTCATATGTGAATATCTAGTCATCC 32297 29 100.0 36 ............................. CGCTTAGAGGTTGCATAGTCTTAATAATCATTAACC 32362 29 100.0 36 ............................. TTTGCTATGACAAAAATGATGTTATTTCCTAATTTT 32427 29 100.0 37 ............................. ATAATTATTGGTTAAGCTTATTTTGATTTAGCAGAAG 32493 29 100.0 37 ............................. CTAAAAAAAATTAATTGTTTTGTGCTATATATAAAAA 32559 29 100.0 36 ............................. AAGTTTCTATTGCTTTACATACTGAATTATCTTCTG 32624 29 100.0 36 ............................. TCTTTCGGCTTTTCGTTTCCAAAATAAACCGATTTA 32689 29 100.0 36 ............................. AAAACAAACAATTATGCAAAATAAGACCAAAAGCAA 32754 29 100.0 35 ............................. TCAGAATTAGTTTTTGTTAATACATACGACAATGA 32818 29 100.0 36 ............................. TGTTAATCTATTTTCTGATATAGGAAGTTTATTAAG 32883 29 100.0 37 ............................. TCATTCGTTTCATTTGATTCTAGTCCAAAGTTATTGG 32949 29 100.0 36 ............................. AGGAGTTTTGGATTAATCAACAAAGGATAGCAGATG 33014 29 100.0 37 ............................. TTGTACTGACAAGAAACTGTAACACCTTCATCACCTA 33080 29 100.0 36 ............................. TACTTTAAAGTTTCTTCTCTATAAGGTATCTTTTTC 33145 29 100.0 36 ............................. TTAGGAAAAGGACAAAAAGAAGAATTAGAAAGATAC 33210 29 100.0 37 ............................. TACAAAATAAAAAAGCACCAGGAACTTTAATTAATTC 33276 29 100.0 37 ............................. CCCCAACGGTTTCTAAATGTATTATCATTCTCTCCGG 33342 29 100.0 37 ............................. TCAATCAAATTTTTACTTTCACAAACTTTTTCATGAG 33408 29 100.0 37 ............................. GATTATGTGGTTAATAAAATTACTAATATTACAGATC 33474 29 100.0 37 ............................. TGTTGTGATAGATATAAACAATGTGAAGAAATAGAAT 33540 29 100.0 36 ............................. TCTTTACCTTGTTTAACTTCACTTATTATAGTTCCA 33605 29 100.0 37 ............................. TATAAATATCTCTTCACATATTCAAAGTTCTTAGTTA 33671 29 100.0 36 ............................. GTTCAAACTTTTTACCTTCATTAAGCATTACCAACC 33736 29 100.0 36 ............................. ATGTGAAACTTTCATAAAGGCGAAAGTTAAGCTTAT 33801 29 100.0 37 ............................. GTGTTTCCTTGCTATGCAATAGGAGAACACAAAGGAG 33867 29 100.0 36 ............................. AGCTGTATTTTTAGAGTTAAAGACTTTTATATTACT 33932 29 100.0 36 ............................. AGGTAAAGCTCCAACATCAGGAGTACTAACAATATC 33997 29 100.0 37 ............................. TGCAAAAACACATGGTTTATCATAAGTTTTCAAAAGC 34063 29 100.0 37 ............................. CCTTTTATTCTTACTGTATCTTCATAAATTTTGAATT 34129 29 100.0 37 ............................. TTAAAGGTAGCAGCTTTAGTAGTTATTTTGATTTATG 34195 29 100.0 36 ............................. AGCATTATTTTAACTTCATCCTCAACTGCAAGTTGA 34260 29 100.0 37 ............................. TTAACAATAGAAGGACTAACAGCACCAACACTACTAA 34326 29 100.0 36 ............................. ATTTAAGTAATGCAGGTAGAGAAAGTGGTAAAAAAC 34391 29 100.0 37 ............................. GGAAGTAATTCATATTCTATGAAAGAGAGAGAAGGAG 34457 29 100.0 37 ............................. ATTATAATTTCTGTTTTAGGTACTTTGGGTGTTACTT 34523 29 100.0 37 ............................. TAACCACGATACTGAGCAAAACTAGGAAAAGTATAAG 34589 29 100.0 36 ............................. TAAGTAATAATTGAAAAACTACAACTTCATGGAACT 34654 29 100.0 37 ............................. AGCTTAAATTGTTTTTCTATTATTACTCTATGTGCTC 34720 29 96.6 37 ............A................ ATTATTAGTTTTTCTCATTCTTCTTATTTGATTTTCG 34786 29 100.0 36 ............................. TTAAAATCATTAAAAGAACTTAAAACTTTATATTTA 34851 29 100.0 36 ............................. TTATTTTAGCTGTAATTAATTCTAAGTCATCTTCAT 34916 29 100.0 37 ............................. TAGTGATTACATAAAGTATTTATAATATCTATACCAG 34982 29 100.0 36 ............................. TTAGGATTCTGGACAAATCAAGATATATTAAGATAT 35047 29 100.0 36 ............................. CTGAGTAAAATTAGCTTGTCTAGCAGGTTTCTTATC 35112 29 100.0 36 ............................. AATGTAATTAAAGGGATAAAAGAAGGACAAACTATT 35177 29 100.0 37 ............................. ACAACAATATTAGTAGTTATATTATTTGCTTTAGAGC 35243 29 100.0 35 ............................. TACGAAATGATGAAAATAGTTATCTTGAGTGGAGA 35307 29 100.0 36 ............................. CAAATATATTTATAGGTTTATCATGGATTTCTATAA 35372 29 100.0 36 ............................. TGATGTACATATGGAGCATATTCAGCTGTACAGCCT 35437 29 100.0 36 ............................. GAATTAAATAAATATGAAATAGCATAATATAGAAAG 35502 29 100.0 36 ............................. GGATCAGGAAAGAGTTTGCACGTGGCACAAGAAATT 35567 29 100.0 37 ............................. AAAAAAATGGAAATTATTTAGGGTGAAAAATAGCTAA 35633 29 100.0 37 ............................. AAAGAAGCTGTATATAAAGTTTTACATGGTGCTGACA 35699 29 86.2 0 .................GAA....C.... | T [35726] ========== ====== ====== ====== ============================= ===================================== ================== 62 29 99.7 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAGAAAAATGAATCAGAAATTGAAAGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAAAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGCAATTATTCAGAGTTAGGATTTACTAGAAACACTAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGGAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGCTTTTAGCATTTTGAAATTTGGG # Right flank : TATATATAAAGCATCTTCAAACTTAAAATCATACTTTTAAACTTATAATTTTTTGTTTCAATAGCAAGTGAACCTAATGAAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAAAGTGTAATAAATCTTTTAGTAGGCTATAACATAGAGAGTTTGTCATATTTAATACTTCCAACATATATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTGATATATACTTATTAAATTTAGAACTTTGAATCTAATAATCTATGTATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCTTTAAATCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //