Array 1 1744-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXBV01000023.1 Marinobacter sp. ES-1 contig13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1743 32 100.0 34 ................................ AGGCAAAGCTAACCGAGTATCCAGCAGCCCAGGT 1677 32 100.0 33 ................................ ATTCGTAGTTAACCTCTCCGGCAACACCCAGTC 1612 32 100.0 34 ................................ CGGCTGGAATCGAGATCAAACTGCCTCCGGTACC 1546 32 100.0 35 ................................ GCCCGAGGGCTGGACGATGGCAGAGGAATAGATGC 1479 32 100.0 33 ................................ TGGCCTGCATCAAGTACTAAGGAGCGGACATGG 1414 32 100.0 35 ................................ ATCTATGTGCTGCCTAGTTCATCTCCTGAAGAGGC 1347 32 100.0 35 ................................ CTGAAGCGCCTGAGCAGCCTGTTACGGTCGAGGGT 1280 32 100.0 33 ................................ ACTTGTGGACCGGATCGATCCCCTGGGCGCTGA 1215 32 100.0 34 ................................ AGCCTGGTGTTTGAGTCTATCTCCGATGCCGTGG 1149 32 100.0 35 ................................ GAGCTGGCACAGTCAGACCTCAGCCGTGCGCTTGG 1082 32 100.0 35 ................................ CGGTACGGCGACGGATTACTGGAGCCTTGACCCGC 1015 32 100.0 35 ................................ CGGATCGTTGCCGGATTCGCCGCCGGTTTCCTCGG 948 32 100.0 34 ................................ TGCCAGCCGGTCAGGTTATCGCCGGTCTTCACGC 882 32 100.0 33 ................................ CGGCGACTGACCGGACCCGAGTCGGCACCCCGA 817 32 100.0 33 ................................ AGCGTGCTGGGTTTTGTATGGAGGGGCCGGTAC 752 32 100.0 34 ................................ TCTGCCTCAGACCTGGAGCTGATTGCGGATCGCG 686 32 100.0 35 ................................ GCCGCCAGAGACCATTCGGGCTGCCTGGGCGGCGA 619 32 100.0 33 ................................ AACGACGAGCCCGCCTGGCAGACCGATGCTGTG 554 32 100.0 34 ................................ GGCATTGATGGCGGTTTCAACTGCGGCCAGCGTC 488 32 100.0 35 ................................ ACCATCAGAAGACCGATGGCTGAAGCGATCAGAAA 421 32 100.0 35 ................................ CGGGTCGGCTGCCACGCTGCCCGCCTAACGGATTG 354 32 100.0 35 ................................ CAGTCACTGACCTCTTCGCCCAGCGCGTCCTTGAT 287 32 100.0 37 ................................ GAACGATGGCCCGCTAAACCCTGCAACGCCCATTGAC 218 32 100.0 35 ................................ AGCCTGGTGCGGAAGGGGCCGATTTATTCAGAGTG 151 32 100.0 34 ................................ CGATATCCGGGGAACCCACCGAACCACTGTGGAG 85 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 26 32 100.0 34 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : CTGTGTCTTCCGATAGGAGAGATCTGCCATGATGGTACTGGTTACATACGACATTTCGATGGAGGACCCGCAGGGTCCAGCGCGGTTGAGGCGAGTGGCAAAAGCGTGTCTCGATTATGGGGTGCGTGTTCAGTATTCGGTGTTCGAATGTGAGGTTGATCCGGCTCAGTGGACCTTTTTCAGGGACGAATTACTGGGTCTTTATGATGAAGAGAAGGATAGTCTGAGATTCTACAAACTCGGTAAAAACTGGAAAAATCGAATTGAACACCATGGAGCGAAGCCAGCTCCGGATATTTTCCGGGATGCGATGATTTTGTAAGCGCTAACCGGTAGTGCTCATTAAAAAGCCGGGACGTTAGCGAAAGGGCAGGGCCTGTGTGGTGCCTGGCCTTTCTGTATTTGGTCATTCAATGTACATCCATAAATTTATGTTGTGTGCTTATGTTAGCGGAATCAGAGTAGTGGTTGCTTTGGATTCAGTGGGTTAGGATAGAGCA # Right flank : CATCACGAACGGCAATTGGTACTGGGTCTCAATCGTCGCGCCCCTCGCGGGCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3617-2317 **** Predicted by CRISPRDetect 2.4 *** >NZ_AXBV01000088.1 Marinobacter sp. ES-1 contig72, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3616 32 100.0 35 ................................ ACGTCTTCGTGTGCGCTCAGGGCGTGGTACCGGTA 3549 32 100.0 35 ................................ CGCAGTATCGGTATGCAGAGCCGGCCCGGATAATG 3482 32 100.0 35 ................................ TGAGACTTCTTCGCCGGCATCCTCTCCGGCGTCAA 3415 32 100.0 35 ................................ AGTTTTTTTGGCTTTGGATTTCTTGCGGTGCTGAA 3348 32 100.0 34 ................................ AGGAGATACGCGACGAGATTTCAGAGCGCAGCCT 3282 32 100.0 34 ................................ TTGCCCCGCGCTTGGTCGGCTTGCGCCTCTTTGA 3216 32 100.0 34 ................................ CGGTTGTACAGGTGGCGCCATGGGCGGTTGTCGT 3150 32 100.0 37 ................................ AGAAGTCGGGCTGCTGACCAAGGAAATGAACCGTCAG 3081 32 100.0 37 ................................ TACGATCAGTACGACCGCAACCCGCTGGCCTACGCCG 3012 32 100.0 35 ................................ GACGAGATCCCCCGCCAGGAGATTGCTTCCAACGT 2945 32 100.0 35 ................................ TTCGACAATACGCTGTGCTTCTGTGAACCGTACTT 2878 32 100.0 35 ................................ ACTAAACCTGATCACGAAAAACGAAGTGCTGCAGT 2811 32 100.0 35 ................................ GCTCAGGATCGTGTCGTTGTCTGCCGGGTGTACCG 2744 32 100.0 35 ................................ TTCTGTCGGCAACCGCTCGCTGCACTTAATCCACC 2677 32 100.0 34 ................................ AGCTTCAGCCCAATCCCTCAAATGTTCCAGCCAG 2611 32 100.0 35 ................................ TGATTGAAGACTGCGTTGCCGGCCTGATGGATGAG 2544 32 100.0 33 ................................ AGACTTGAACCCGCCATGCACCGCCCCCTGAAT 2479 32 100.0 33 ................................ TCGGCATACAGTTTGGTAAGCCTTACCGCTGCC 2414 32 100.0 34 ................................ GCCTTGCCGCGTCCGTCAAGCGAGATGTTCGCTA 2348 32 93.8 0 ........T.....................C. | ========== ====== ====== ====== ================================ ===================================== ================== 20 32 99.7 35 GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Left flank : CGGGCGCGTGGATTGAAACACACCAGGGCGCCTCAATGTCTGAGCACTCGAT # Right flank : CCCCTGGTTGGAATGCTGTAACCGTCCGGTAAACCCATCTTGAGCCAGGCGCTGCGGCCGTCAGGATAGTGTCCACTTATTTTTAAGTGGACACTTAACATGACCAACATAAGCGTAACCAAGCCCTACCAAAAACGTCGTCGTTACTCTAAAGAGCTGAAGGCTCGTATCGTCGCCGAATGTTTGAAGCCCGGGGCGTCTGTTTCCCGGATTTCGCTGGATAACGGCCTCAACGCCAACATGGTCCGGCGCTGGATGAGCGAAGCGCGAAGAGCGGGTAAAACACCGGAAACACCTGGATTCGTTCCGGTCCGTCTGCCTGCAGTGGCCTCTGCACCGAGCAACGAATCCGTTTCAGACAAGCGTAGCACCATCCGCATTGAGATTCCCCGCGCCGGTGGTGCGGTTGTGGTGGAGTGGCCTGCGGAGCAAGCTCATCAGTGTGCGGCTTTGCTTCGGGATCTGTTGGGATGATCCGCATTGATGAGATCTGGCTGGCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCTCGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //