Array 1 8684-9443 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMD01000387.1 Escherichia coli strain JML003 sequence387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8684 29 100.0 32 ............................. AGATGAGGAGCTTAGAGGGACGCCGCGCAACA 8745 29 100.0 32 ............................. CGGCGTGACACACATAGTCATTGTGTACGCTG 8806 29 100.0 32 ............................. GGTGTTAACCGGGTAGCGGCGGCCCTTCAGTT 8867 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 8928 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 8989 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9050 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 9111 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9171 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9232 29 82.8 32 ........................NNNNN NNNNTTATAATTATTTATTGAAATATCATTCC 9293 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9354 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9415 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1461-90 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFMD01000467.1 Escherichia coli strain JML003 sequence467, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1460 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 1399 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 1338 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 1277 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 1216 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 1155 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 1094 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 1033 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 972 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 911 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 850 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 789 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 728 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 667 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 606 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 545 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 484 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 423 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 362 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 301 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 240 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 179 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 118 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CC # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //