Array 1 70978-69548 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000005.1 Thermotoga sp. Xyl54 Contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================== ================== 70977 30 80.0 37 T...T.G...A.T.......G......... AGCTTGAGGAGATTTACTCATCACCTGGATATGTTTA 70910 30 100.0 36 .............................. AAACGGACGAACGGTGTCGGCCAAAGTAAGGAGGAT 70844 30 100.0 37 .............................. ATAGGCTGGACAGGTGCATAGGCCTCTTCGAGTTCGA 70777 30 100.0 37 .............................. CTGTCGAATCTTATTTTTGCTTTTCCTTGCAATACAT 70710 30 100.0 36 .............................. TATCTCAACCTGTGACTGGCCGGACGGCTAGATCAG 70644 30 100.0 39 .............................. AAACAGATGTCCCCCTAAAGCTTGGCGACATCATCACAA 70575 30 100.0 37 .............................. GTCGTGGATATCTGCATCTCTCTCCTCTGTACTACTC 70508 30 100.0 35 .............................. GCAGATTGCGGGTTTGTACATCTGCAGGATCTCGA 70443 30 100.0 36 .............................. TTACTCAAAGAGACATGCGCGAAATTATCCAAGGGT 70377 30 100.0 37 .............................. GCTATTATGGTAGTAATTATAGATCTGTGTATCAGAT 70310 30 100.0 42 .............................. TGTTCGTGAAACCCGAGTGGCTCATGGGTTGGCTACTCAACT 70238 30 100.0 35 .............................. TTGGAGAGAGCAAGAGGCAAATACTACTACATGGT 70173 30 100.0 36 .............................. AAGCAATTCCTGGAAGAGGGGGGAGATGATGCTTAA 70107 30 100.0 35 .............................. GGCGCTAATGTCTTGACAAAGTTTGTCTCCAAAGG 70042 30 100.0 36 .............................. TCGAGTTTCGTAGTATATTCCAAAAATTCTTCGCCG 69976 30 100.0 36 .............................. AGTAACCTACAAATTGAAGTAGAAGGAGGTGTTGCA 69910 30 100.0 38 .............................. ACGTTTCTTACACCTCTTCTCGAAGGTTCAGTCTTTCT 69842 30 100.0 36 .............................. TACGTTAACATAAAATCCCCCCCTTCGATTATAAAT 69776 30 100.0 36 .............................. TAAAGAAATGGTTGGAAGGCGGTGACGAGTATGAAG 69710 30 100.0 37 .............................. TCTTGTGAACAACCTCGTTTCCGGAACACAGAACAAG 69643 30 100.0 36 .............................. GTTTTACAAAAAAGAATATTTTTTCAAAATCAACCG 69577 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================== ================== 22 30 99.1 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : TGGTCTTCATAGACACAAAGAACAGATCTGACAGATTTGAAAGGCAAAGGAAAGACTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGGATTGGATCGGGATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGCGAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGGGAAAAAGAGGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGATTTGTAGAGTTTGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATATGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTTCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGAGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTTGAATTCAAAGCGCTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACGCATCACCCACTTTGTGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 1 3044-903 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000003.1 Thermotoga sp. Xyl54 Contig3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 3043 29 100.0 36 ............................. GCTTACTTCTTTGCATAAGTAGTTCTGGGAACTCCA 2978 29 100.0 37 ............................. GATCGATGCCGATTTGCACTTTGTGTTCTGTTTTTTT 2912 29 100.0 36 ............................. GACGGCACTGTGTTTCTGCACGGGAGGGCTGTAGTC 2847 29 100.0 37 ............................. GCAGAAAAAGTTCGAACATCTTTCTGACCACAACTGC 2781 29 100.0 38 ............................. AGAATTTCAGCTATTTTGTACTGTGAAAGACCCATTTT 2714 29 100.0 36 ............................. GATCCTTGTTGAATGGAAATTACTTGACTGGTTAAG 2649 29 100.0 37 ............................. GATATACCCAGTGAAGGCATACGTTTCTCGATACGAA 2583 29 100.0 37 ............................. ATGACGAATGCCAGGATTGAGAGGACAGCGATGCTGA 2517 29 100.0 37 ............................. GCTCCTAAAGCAAAGAGATCGTAGTACCATGTGTAGG 2451 29 100.0 36 ............................. TAGAAAAATATGTACCAGAGGAGAAACTCAAAAGAA 2386 29 100.0 38 ............................. GCTGGAACATACGAAACGATCTCCCTTTCGGACTACGC 2319 29 100.0 36 ............................. ACACCTTTGAAATTCGAATGTCAGATCGTTTCAATC 2254 29 100.0 39 ............................. GACATAGACACAACACGAAGTTTCATAGGAAGGGTACTG 2186 29 100.0 37 ............................. AATGGAAACACCTGTAGCTTGAGAGTGAGAGTCTTTC 2120 29 100.0 36 ............................. CCTTCATCTCCCTCCTTTTGCTTCTCCTCTCTGTAT 2055 29 100.0 35 ............................. AAAATGGCCTCTCTTGCTTGCTCTTTTTCTTCCTC 1991 29 100.0 37 ............................. TATGTCGGCGTTTTCGAAAAGATCGTAGTCACCCCTG 1925 29 100.0 37 ............................. TTTCTGTGTAAGCTTCTTGATCTCCTGTTCGATATTA 1859 29 100.0 37 ............................. TCCACAGAGCAAAAGCGAATCTGAATGAGAAAGGAAG 1793 29 100.0 36 ............................. TTTCGTCGTAGACAACTATCTCTCTTTTTACTGTCA 1728 29 100.0 36 ............................. CTTTTCATAGACGATGTGGACACTGAAGGGAAAAGA 1663 29 100.0 37 ............................. GTGATCTGCTGGGTGATGTACTTTCCGATCGAAAAGG 1597 29 100.0 37 ............................. TATAATTCGAGAGTTAATTCTGTAGATGTTATGCTCA 1531 29 100.0 37 ............................. CCGGGCAATTGTAATGGAGGTTGCAGAGGACGGTGCA 1465 29 100.0 37 ............................. CATCAACACATACACCGATCTCTATTTGTATGTCGAA 1399 29 100.0 39 ............................. TATGGCGCCGTCAACGCCGAATAGCGGTTATCAATCCAA 1331 29 100.0 37 ............................. ATTGGCTATATTCGCAAATCGCCTATATCCCTTGGCC 1265 29 100.0 37 ............................. TGTGGAGACCGTTAGCAAGCCTGCGATTGACAACTAC 1199 29 100.0 37 ............................. GCGAGTTGAAATTTCCCTACAAAGAATGGAAGGGAGC 1133 29 100.0 38 ............................. ATCAAAACAAGCAGTAACCGAAACCGCACAGCCTACTA 1066 29 100.0 38 ............................. TCGGAAAGCCCCAATTTGATATGAGTAGTAATAGCCTC 999 29 96.6 37 ............................T GGCGTGATGTGATAGATGGAAAGGTGAACCACTGCTA 933 29 82.8 0 T........C.........A.....A..T | C,T [908,916] ========== ====== ====== ====== ============================= ======================================= ================== 33 29 99.4 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : CAACAAACAGTTCTTCATAGAAAGCTGAAGAGAAAGGTTAAATATCAATCTTTCATAAGATTGGAGGCTTATAAAATAATCAAACATCTGCTTGGAGAAGATGAGTACAGGCCTCTCAAAGTCTGGTGGTAGGTGATATCAATGAGGGTAATTTTGGTTTACGACATTTCTACTGAGACAAAAGAAGGAGTGAGGCGATTAAACAGAGTAAGGAAAATAGCTAGAAGATATCTAGACCATGTTCAAAAGTCAGTTTTTGAAGGTGAACTAACGGAGGGAGAAATCGAGAAACTGAAATTTGAACTACAATGCATCATTGATAATGACGAAGACTTTGTGATAATTTACAAAATGCCACCTTCTATTATGATAGAAAGAGACATCCTGACCAACACGGACGATCCAACATCTAATTTCATTTAAACAAAACCGGAGGTTTGACGCAATACTCATCTAACAAATGTTCTATAATGTGTTTTTTTACTGAAAAGCTGAATGCG # Right flank : CAATAAGAATTCCCGCATCAAGCGGGGCTTTTTTCTTACACATTTTTTGAAATCTGTACTCAAGGGGGATGGATGGGATATCAAGCAAGACAAGAAAAAAATTAAAAACGAACTTTTGTTGGAAAGAGAGTTTCTGTTAGAGGGAAAATCAAAGTGTTTGGTACCACAGGAAGTCCTTTCTCGAAAAAAACAATTCTTATAACAACTGTGAGGTATTTAGATAAAAAGATCAAGATAGATCATCTGTGGGTTTCGATCAAAAAAGGCACTGAAAATATGGATAAGAATTTTATAACCCTTTGAAATGCGCTTTTGAGAGTTCTTTAAGGAGGTGTTTGGTACGATGATTTTTGTGGGAGATATCAGCACGCTGGATATGTGCAGGCGTAATCATGCGGGAGAAATTAAGCTCAAAGATGTCCTGACTAAGAACGAGGGATTGCAACGTCTTCAGAAGCTAAGATGGTGGTACCTGTACGAGGTACCAGCGACCATGGCAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.10,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 244938-244113 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000009.1 Thermotoga sp. Xyl54 Contig9, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 244937 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 244872 30 100.0 36 .............................. AATTTGAGCCCGGGGAGGAGGATTTCGAATGGCTAC 244806 30 100.0 37 .............................. GGGTAGAAGTTCCTGTTAATAGAGCTCAAGCCACACT 244739 30 100.0 35 .............................. CAACTGGACGAACTCGCCGAAAGTCATAAAATGCA 244674 30 100.0 36 .............................. TCATCCCTCTGTAGATGAAAAATCTCAGAAAGCTCA 244608 30 100.0 36 .............................. TAGGTTGGGTGGTGTAGAATTTGACCTTTACCAGCA 244542 30 100.0 36 .............................. GTTGGAAAGAGACGAAGAACTTATCAACATGATCAT 244476 30 100.0 36 .............................. GTTTATATAGACTGCTATCTGTCCACGCAAGGATAT 244410 30 100.0 36 .............................. CAGAAGATTCAAAAGTCCCAAGCCGGCGTGGTATCT 244344 30 100.0 38 .............................. AGGAGGCGGTATTATGAAGTTGAGAGTGTATCGTATGT 244276 30 100.0 38 .............................. GTTGTTAACTGGGCACGAGACTATTACTACTCATACCA 244208 30 100.0 36 .............................. TCTTCATCGAAAACACTTCTGCAAACAAGGGTGTTA 244142 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 13 30 99.2 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCGCCGTTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGAGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 1131-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000011.1 Thermotoga sp. Xyl54 Contig11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1130 30 93.3 37 ......G.............G......... TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT 1063 30 100.0 36 .............................. TCGGTTTGTGCACTATCACTTCTCCGCTTGAGAGCG 997 30 100.0 36 .............................. CCTGCTTAACGATATTATCTCAACAAAGCTTCTGGA 931 30 100.0 36 .............................. CTTAGGTCGTACCAATTAACACCATCTATTTTTGCA 865 30 100.0 36 .............................. CGATGTCGCCGCCAAGTATTTCAGGGGTTTATCGGA 799 30 100.0 36 .............................. ATTCCCTATGCCTCTTGACATCTATAGCTATTCATG 733 30 100.0 36 .............................. TGTTCTGTTGTGGGATCGTATTTGAACTCACTCTCT 667 30 100.0 38 .............................. GTGGGAAGGCGTGGACGTCATATTCATCGCACATTCGC 599 30 100.0 35 .............................. CGTGCTTGAGTCGTAGGCTTCGGGTTTGATGCCGA 534 30 100.0 37 .............................. GCGATTTCTTTAGCGGATATAGATTTATCTCTACTTC 467 30 100.0 38 .............................. TGCTCTTCGCCCCGGGGTCCAAAAATAAGTGTTGGCCG 399 30 100.0 37 .............................. CTGGCAGGAATGTATGCCCCGCCGCCCACAACTCCAG 332 30 100.0 37 .............................. CACCCGCAAGAGCACAGTCTATTACGCAGACAATTTT 265 30 100.0 37 .............................. ATGTATCAGTAGAAGGAAATTATGTAAGTCCATATGA 198 30 100.0 37 .............................. CCTCCACCTTGGGATTGGGATACCTCAAAGGGAATAT 131 30 100.0 35 .............................. CTGGAAGTTTCATTGTCGAAAGGTATTCTTACACC 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 17 30 99.6 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CTCCTACCGGTAAATGGTTCTTCGTTGTTCTCATCTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 2 13294-13856 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000011.1 Thermotoga sp. Xyl54 Contig11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 13294 30 93.3 36 .G..................G......... CCACGGAAAACCGAGTTTTAGACTTTGGTTGTCTTC 13360 30 96.7 37 ....................G......... CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 13427 30 100.0 39 .............................. CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 13496 30 100.0 36 .............................. TCTCACTTTCACTGATTCTGAAGAGAAACGGTGCGT 13562 30 100.0 36 .............................. CACCTGAGGATATATCAGAGGAGGAAAGAGAGTTTA 13628 30 100.0 36 .............................. TGCCGTACCTTTATTGTGCTGAAACATATATAGGTA 13694 30 100.0 36 .............................. ACGGGAGTCTTAGTGCCGAAGAGCTTGTTGATAGGA 13760 30 100.0 37 .............................. GGTTATGTAGCCTTCCTCCCCCAGGACGTGGATTCTA 13827 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 9 30 98.9 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CTTCGGCATGTGAAGGACCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGACACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAGCACCATGGAAGGCTTCACAGGTAGTCTCAGAAGATGTTCTCTTATGTATTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGATTTCTTCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGACCGACGATCTCTTTCCTTCTTGCCCAGAGAACCACTTCTTCTCCGTTTTCATGCAGTATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATGGTTCTCTCATATCTCACGGAATCGGGT # Right flank : CCCTCCCCCAGTTTTAATCTTTCTTGTTCCAACCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 281659-281954 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000015.1 Thermotoga sp. Xyl54 Contig15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 281659 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 281725 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 281791 30 100.0 37 .............................. GAGAGATAAGAAAGAAGTGGTATCAGAACAGCTCGAG 281858 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 281925 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 94.7 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCCTCGCAGAAAGTCTGAAAATATCCGGACTACTTCCCGCTCTTGCCGTTGGATTTCTCATGTCAGTTACCATTGCAAGCTTTGGTATTGCGCTTGCTTTGAAGATGGAAAGCACTGAGGGATTCCAGATGATCATGATGGCTCTGATGATGCCTCTGGTCTTTCTGAGCGGTGCAATGTATCCCATCGATTCCATGCCAAACTGGATGAAGGCTCTTGCCTACATAAATCCCCTCACCTACGCGGTGGACGCCTCGAGAGGGTACTTAGTGGGAGAAAAAGTGATGAAGTTCTCCTTCGGCCTCGATTGGGGAATTCTCTCGATCTTGATGCTGGTAGGGCTCATCCTCGCAATGGAAAGCTTCGAAAGAGCAAGGATAAGTTGAGATATCAACAGCAAAAACGAAGGCAGGGGGTTTCCCTGCCTTTTTGTTTTTTTATGGAGCTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : GCGGTATAGCGTCGGTACTAGACATAACGTATTCC # Questionable array : NO Score: 8.80 # Score Detail : 1:0, 2:3, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.41 Confidence: HIGH] # Array family : NA // Array 1 407-42 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000017.1 Thermotoga sp. Xyl54 Contig17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 406 31 71.0 36 TG...TT.......G.A..TGC......... GATTCAATATCGTGGGCCACGACTACAGGGGGAAGC G [399] 338 31 93.5 35 ....................G.........G AACAGGCAGTTGGTAGACCCCACAGAACGGCGCGT A [324] 271 31 100.0 36 ............................... GTGCCATTTGCCAATTTCTGCACTTAGATCGAATCC 204 31 100.0 35 ............................... CAGCGTGTTCTTCGTGTGTTTCAACTTTTCAACTA 138 31 100.0 35 ............................... TGAAGTCTGGGTAGGAGAACCGTACGAAATAATCA 72 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 94.1 36 GTTTCCATACCTCTAAGGAACTATTGAAACT # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAGGAAACAGGTACTGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAATATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCGTCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGGATTTT # Right flank : TGTGCCCCCACCATGTATAGCCACGAAATCTTCGTGACACCA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : NA // Array 2 101210-102440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSFJ01000017.1 Thermotoga sp. Xyl54 Contig17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 101210 30 100.0 36 .............................. ATATCACCTTACAAGACAAAAACGAAGACAAAATTT 101276 30 100.0 36 .............................. TCAGGCTGACTGACAAAATGAATAGACTTGAGAAAT 101342 30 100.0 36 .............................. CGACAATGAATCCATCACGGGTTTTCAGAACGCACT 101408 30 100.0 37 .............................. ACAAAAACGTTTCCCAAATCTCTCAGCATTCCCACCG 101475 30 100.0 38 .............................. AATGAAAGCCCAGAGTAGCGGGAAAGCCCCCGAAAAAA 101543 30 100.0 36 .............................. CGTCAAAGCCCTAGCGTGCGACCTCGTTGCTGTAGC 101609 30 100.0 37 .............................. AAGATGCATTACAACTGTATAGAGAACTCTTACCAGG 101676 30 100.0 36 .............................. AGATTCGAGCAAGATTTGGCCATATGGTCGAAGCAA 101742 30 100.0 36 .............................. TGGTTCAGAGTATGGCAAAACCATCTGAAATACAAA 101808 30 100.0 37 .............................. TAGTCCAAAGCCCTTGCATGGTCAAAGCCTATGCCGT 101875 30 100.0 39 .............................. CCCGTGACCTTGTGAAGCGCAATTCGATGACATACGTTT 101944 30 100.0 38 .............................. TAGCCGCCTATTGCCTATTTTGTAACGTAGATGTAACT 102012 30 100.0 37 .............................. AAGCCGAGTGGGAAAAGCTCGCAGAAGAAGAGCCGAC 102079 30 100.0 38 .............................. TTTTGCGTCCTTTGTTGGTTCTATCTCAAATGTGAAGA 102147 30 100.0 36 .............................. TGATGAAGTTGGATTCAATATCGTAAAAGTCAACGC 102213 30 100.0 37 .............................. ACATGAAAGTAGTTGAAAAGGCTGTGGAATGGTGCTA 102280 30 100.0 36 .............................. GTCTCGACCGTGATCTTTCACATAAAACGTTCCGTG 102346 30 100.0 35 .............................. AGAGATAAACACCTATTACAATCTCTACTCGGGAG 102411 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 19 30 100.0 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : AAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGTGATGGAAACTTCAAGGGCTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAGAGAAATAAAAAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAATACAGAATAAAGCTTCCACCAACGATCTATGGATTTGAGGAACTCCGATGCAAAAACGAGAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAGACGAAAAAGGACAGTTTATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAAATCTGGAGTATTTGAGAAATCTACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTCTTTTTATTTTATAACCCTTTAAAAGCTTATGTGAACTTGGTTAATGTTTCTATACCTCAAATCAGGCCCGTTAGAGCCGG # Right flank : TGAAGTGTATGCAACAGAACGAACTTTTTGGAATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA //