Array 1 336847-338154 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNLR010000001.1 Enterocloster bolteae strain D40t1_170626_F8 NODE_1_length_987224_cov_29.7861, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 336847 33 100.0 34 ................................. CTTGGGATTGAGTGAGTGGTTGGCATGGCTGCCG 336914 33 100.0 35 ................................. ATCTGAAGGGATAAAGAGGGATTTTAGCCCCTCTA 336982 33 100.0 35 ................................. CGCTTGTTATACTTGAGTGACAATTTGACCATTAA 337050 33 100.0 34 ................................. GACAAAACCGCCACGGCCATATGAAATATCAACA 337117 33 100.0 33 ................................. TTACTCTCTGTAACATAAAAACACCTCCTAAAA 337183 33 100.0 33 ................................. CGTAAGGGAACCATTCAATCGGTCGTTATCAGA 337249 33 100.0 34 ................................. TTCTATACAGAGTTTTAATCGCGCCTCCAATTCA 337316 33 100.0 34 ................................. ATCAAGAGAAAACAAACAGTATTCCGTGCTGGAA 337383 33 100.0 36 ................................. ATTCCACTGCCTGTCAGCCATGGACTTATACATATC 337452 33 100.0 34 ................................. CCTCTACCGGGATAGTGATAAGCTGCATAAAGCC 337519 33 100.0 34 ................................. AACCATGATAGACGGTAAGAATGTAGAACATACA 337586 33 100.0 34 ................................. AATTTTACATAATTGTTCATATAGACTCATACAG 337653 33 100.0 33 ................................. CACATTTTCAGATGCAAACCGATTTAAAGATTG 337719 33 100.0 33 ................................. TTTCTACGTCGTTAAAAAGGTGCGCATATGTTT 337785 33 100.0 34 ................................. GTTTTGTTCCCTCTGCTGTGCAAGCAGCTGCTGG 337852 33 100.0 34 ................................. AGGAGGAGTTTGGCCGGCTCTTGAATCTACTGGA 337919 33 100.0 36 ................................. CCTGGACATTGGGAATGTGTTTAAGGTCTGGAAGTA 337988 33 100.0 34 ................................. GACAGCTCCTCTCAGGCCCACCAGCGACATAGCC 338055 33 100.0 34 ................................. ATTATGATGAGACATTTGTTGTTGATATGTCGGA 338122 33 81.8 0 .............C...........A..TTCC. | ========== ====== ====== ====== ================================= ==================================== ================== 20 33 99.1 34 GTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCGCTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGCTGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACGGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTTGAACATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGATCTGGCTGCGGGTGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAATGAGAACGGTTTTGGATGTGTGCAGGGTAGGTTGGCGGTGATTTGAGGGGGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : TTTCCGGTCAGTCTCCGCCCTCACAGCGAAGTAAGCTGAGAAGCCATCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAACCATAAACGTTAGCTATAACTAACAACACGCAGCAAAAAAGGTGGGCGAACACCCACCTTTGCCATAAACCTGTTATAGGGTATAAAGAATGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACCTTGGCGCTGGTTTCCAGAATGATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGATACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCCTTAAATGCAGTCGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGAGACGGGTCCACAGCCATGACCATGGAGGTTTCCATCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGTGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.60,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 122958-121992 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNLR010000004.1 Enterocloster bolteae strain D40t1_170626_F8 NODE_4_length_441648_cov_27.0526, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 122957 33 100.0 34 ................................. TTGTTTTGGTTGGAACTGTTGTGTATATAGCTTC 122890 33 100.0 33 ................................. CCATCCATCCGGGATATGGAATGGATTTATTAC 122824 33 100.0 33 ................................. TTACCGCCTTATCCTCTTCCGGCTCTCCCTCCG 122758 33 100.0 34 ................................. TAATGTATCCCCTATCATGGAGAAAAGCGAAAAA 122691 33 100.0 35 ................................. AAATGCAGTAAGGTTATTGTCAATATCCTCTATAC 122623 33 100.0 34 ................................. GGGTGTGAAATAGTCAATCGGCTTTTTGGTAACC 122556 33 100.0 35 ................................. TGATTTTGTTATACTGTTGACTGCCTGGACCATTG 122488 33 100.0 33 ................................. ATACTCTGCTGTGTGGGCAGCCATGACTGCACG 122422 33 100.0 33 ................................. GGATGTATCTCACATTTAAGGGAGGATAGTTAT 122356 33 100.0 34 ................................. GACTATCTGGCAATCCCAACAGTGGAAACGGACG 122289 33 100.0 33 ................................. TTCTTAAATTCCTTGGCCATCCCTTCCATAAAC 122223 33 100.0 34 ................................. TCATCTGAGATATCACAAATAGTTGTAGACCGGC 122156 33 100.0 33 ................................. AATTTACTATCCTCCTATACAGACACACGCACC 122090 33 97.0 33 .........A....................... TTATGACAACTTTGGAAGCCCATTGAACCACAC 122024 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= =================================== ================== 15 33 98.6 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGCCAGGGCAGAGTACTGCGTATTTACAATGCAGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGTGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCTGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCTGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGCAGGTTTGGATAATTTTGCT # Right flank : ATACCTGTAAGCCCCTAAATTGATGCAAAAGGAAAATTGCTCCCCACGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGGTCAACAGGGAATCCGTTAAGCGCATACCACCCCCCCCCAGCAAATAACATCCGCCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAAAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGACGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGAAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACCGCGTACTACAATCAAAAGGAAAAAGAAATCAGGGAGAATGA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 351529-351740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADNLR010000003.1 Enterocloster bolteae strain D40t1_170626_F8 NODE_3_length_479349_cov_23.7597, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 351529 32 100.0 26 ................................ GGTCTAAGTAATACCACTGGCCTCCC 351587 32 96.9 28 ...............................C CGTCCAGATAATACCATCTTCCATTAAT CT [351592] 351649 32 84.4 28 G....................CT.A......C CGTTCATATAATACCATTTGCCGTTGAT 351709 32 75.0 0 G...............AT...AATA...T... | ========== ====== ====== ====== ================================ ============================ ================== 4 32 89.1 28 AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Left flank : CAGACAATCGCTTTCCCAAGGCCAGACGCGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTCACAGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATGCTCTCATCCACCTGCACGCCCGTTACAACATACCGGCCGCCGATCTCACACTCGTTCAGCTTTTTCTGCATTGATGCCTGTCTCCTTTTGTAGTTACATTTAAACCATATTCATTGTATGCTTAATGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTCAAAAAAAGATACAGCGAATCTCTCCGCTGCATCTTTTCCTGATTTTTCTATATTTTTCTGTATTTTCCGGTTCTGTATATTCGTATTATGTTTTACTGCACCCAGGCTCCGGAACCATCCACATATTTTCCATCCGGCGTCCATGTATTATAATACATGGCTCCGTTGGTGCCCAGATAGTAGTACTTGCCGTTGAT # Right flank : GAAGGATTCAGATAATACCAGGTTCCGTCCAGCTTCTGCCAGCCGGTAACGATATACCCCTTGTTGTTGAAATAATACCATGCGCCGTTAATCTGTTTCCAGCAGGAGGCCGGATATCCGCCGGTGTCATACGCATACCATACACCTGTACCGTCCTGCTCCCAATGTCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGCTGGAATCCTCGGACCATTCTCCTGTCTTATTATTGTAACGGGAAATAGCCCTTACACGGAAGGTATAGTCTCCCTCCCTGTTAAAATAACCTGCAAAGTTATATGAGGTTCCTGTAGTGCTGACCGTAGTGACCGTCTTATCGTCACGGAGCAGCTTTACATCGTAACTCTTAGCGCCCTCAATCTCTTCCCACTCAGCCGTGGTATCATTCCACTCCAGCTCTGACGCGCCCTGAAGCTTACCGCCGATACGTTTTAACTCAGCATACACTTCAATGTACTG # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.09, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //