Array 1 443773-444160 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCF01000001.1 Pseudomonas aeruginosa strain T3354 IPC1135_1.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 443773 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 443833 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 443893 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 443953 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 444013 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 444073 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 444133 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTTGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 182919-184387 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCF01000002.1 Pseudomonas aeruginosa strain T3354 IPC1135_2.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 182919 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 182979 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 183039 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 183099 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 183159 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 183219 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 183279 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 183339 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 183399 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 183459 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 183519 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 183579 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 183639 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 183699 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 183759 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 183820 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 183880 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 183940 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 184000 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 184060 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 184120 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 184180 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 184240 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 184300 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 184360 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 194198-192973 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCF01000002.1 Pseudomonas aeruginosa strain T3354 IPC1135_2.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 194197 28 100.0 32 ............................ TGCGGCCGCCGCAGGTAACGTAACGCCGAGGT 194137 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 194077 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 194017 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 193957 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 193897 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 193837 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 193776 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 193716 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 193656 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 193596 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 193536 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 193476 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 193416 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 193360 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 193300 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 193240 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 193180 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 193120 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 193060 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 193000 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTRCACTGCCACATAGGTCGTCAAGAAACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 81218-80654 **** Predicted by CRISPRDetect 2.4 *** >NZ_RXCF01000014.1 Pseudomonas aeruginosa strain T3354 IPC1135_14.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================================================================= ================== 81217 26 100.0 35 .......................... CGGCGGCGCAGCTAGGCGCACTCCAGGGCTATCGA 81156 26 100.0 35 .......................... CGTGTCATTCAAGTGAATACCTCGGGCCGCCTTCT 81095 26 96.2 35 ........................A. CCGCGGATGGCTAAAGCGCTCAGTCAGCTCGATCA 81034 26 80.8 35 ..A.......C..G..........AT GGGGTGGGCTACGACGAAGCCGCCGAGCTGAAGGC 80973 26 80.8 35 ..........CG..T.........AT CGGCGTTGAAGAGTTGGGTTGGTTGCTTTAGGTGG 80912 26 76.9 34 ..........CGC.G.........AG CGTATCGCTGAACTAAAAGCACTGGCTGCCGAAC 80852 26 73.1 28 A.........CGA.T.........CC CGAAGAGATGGCTTTTCTGGAAAGGCTT G [80847] 80797 26 76.9 93 ..........CGA.A.T........T CGAACCCTGCTGGCTAGCCGCCTGCAAGTACTTCAGATTCCCGCCTTGGCGGGGTGAACGGTTGCGCCATACGTGCTGTACACCGCAGACCCT 80678 25 69.2 0 ..T.......C-AGT.........AG | ========== ====== ====== ====== ========================== ============================================================================================= ================== 9 26 83.8 41 GTGTTCCCCGTATACGCGGGGGTGTA # Left flank : ACAGATCCCCAACCAGATGTGGATGCAGACTGGCAGGCTGAGCCTCTTCGAAGCGGCGCTTCACCGGCAATCGGGTTACCTGCAACTGCGTGGGGCAAAGCCCAATCAAGCTGGCGGTCCGTTCAAGACATCCATCTATCACCGCCCCATAGTCCAGGCCGAGCTGACAGCGTTCTGCGTGGGGGATCAGCAAGGTATCGAGGCCCTACTTCGCGAATGCCGCCAGATCGGCGGTAAGCGAGGTGTGGGGTTTGGTCGGGTTGCCGGGTTCAAGGTGGAGCCTGTAGCCGAAACTGACTGCGCCTGGTCCTGGCGAGCGTTGCCGGCGGATGCTGACCCCCGATTGGTTACTGCAGAACATGCCCGCTGTATTGCCGCAATTCGGGGGCCGTACTGGGATCGTACCCTGCACGTTGAGGCGCTGGCGCCTACCGCTTAAGGGCTTGATGTAAAAGTCCAAGATATGGTGGCTTTGAGTACGCATGCTTCCATATCTTGGT # Right flank : CGGACTCAACATCTCCCTGCTGAGCCACGCTGTTTGTTTTCCCCAAGAGAAAGGGGTGACCGGAATGCAGTCCTGAGCGCTTTCCGTCGTTGTTTTCCCGTTAATCGGGGTAAAGAAAAGGCCCGCATTGAGCGGGCCTTTTCGCTAGCGCGCATGGGCTGATCAGTGCAGGTCGTAATCCCGTTCGAGCGTATTGTCGGCAAGCGGGACCGGTCGCAGGGTCTGCAGCATCACGTGGGCATCTTTGATCGTCCGCAGGATGCCCTGCAGCTGCTCGAGGGTTGCGGAGCACTGCATCTCGACATCGACATCAGGAAGGCCGTCAGCGTCGCTATGAACCGTGCTGGCCACCTCATAGCCCTGGCTGCGCACCAGGCTCAAGAACAGAGTGGTATCCAGCTCGGTTTCGGCGCGGAACGAGTAGGTGATCTGGGGGGCGACGGAGGGATCCTGCGTCAGTGCTTCGATGGGCAGCATGGGAATAGCGCTGGGGAACTGGA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.28, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTATACGCGGGGGTGTA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.90,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //