Array 1 40367-40643 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL585951.1 Streptomyces sp. NRRL S-474 P279_Doro1_scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 40367 33 90.9 28 ..............................CCA CTCTCAGGGTCCCGTGCCCGACGTTCGA 40428 33 97.0 28 .............................T... GGTTGTTGGCCGGCCGCTGGTCCATGGA 40489 33 93.9 28 .........................G...T... GGGACCAGTGGTGGCCGGCCAACCAGCC 40550 33 100.0 28 ................................. AGTCGCGGCGGGTGATCTGCGCGCCGCC 40611 33 93.9 0 .............................G..A | ========== ====== ====== ====== ================================= ============================ ================== 5 33 95.1 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGT # Left flank : GCAGGTCAGGAAGAGTCCTCCCCGCCGACGCGGGGGTGTTCCGAGCCTCGGCAGCCTGGANTGCGAGGGTGTTCCGAAGGTCACCGTCCAGGCGATCATCCGGCAGGCGTCCTCCCCGCCGACGCGGGGGTGCTCCGCGGGCGGCGCGCTTCGACGCCACCTCCTACCGGTCCTCCCCGCCGACGCGGGGGTGCTCCGAAGGGGTACGGGCGCTTCTACCGTGTTGGTCCGTCCTCCCCGCCGACGCGTAGGTGTTCCGCCAGCGACTGGCACGCCGTCCCAGGCGCCGAAGTCCTCCCCGCCGACGCAGGGGTGTTCCGAACTCGGCCGCCACCTCCATGCCCATCAGCCGGTCCTCCCCGCCGACGCGGGGATGTTCCGAAGGACACGATGGACTGCTGGACCTGGTCCAGGTCCCCCGCCGACGCGGGGGTGTTCCGCGGGCGGCGCGCTTCGNGGGGTGTTCCGAGTGACCGCCGCGTCCCCCTGCCCGCCGGCCT # Right flank : ACAGCAACGGACACGAACGTCGTCGTCTCGTCCTCCCCGCCGACGCGGGGGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGACGCGGGGGTGTTCCGATGTTCCCGAGCGCCTCCTGGCCCGCCATCGAGTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGGCGACGTCCCGCAGGCTGTATGCCCGGCCGTCCTCCCCGCCGACGCGGGGGTGTTCCGTTCATGGAGCCCGGGTCGCCGTGGTCGTTCTCGTCCTCCCCGCCGACGCGGGGGTGTTCCGTAGCTGTAGCTGGTGCTGGAGCCGATGCCGGAGTT # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 40957-41356 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL585951.1 Streptomyces sp. NRRL S-474 P279_Doro1_scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================ ================== 40957 33 87.9 28 .............................GCGG CGACGTCCCGCAGGCTGTATGCCCGGCC 41018 33 100.0 28 ................................. TGGAGCCCGGGTCGCCGTGGTCGTTCTC 41079 33 90.9 28 ..............................AGC TGTAGCTGGTGCTGGAGCCGATGCCGGA 41140 33 84.8 28 ..T....................A.....GAA. CCGTCTCCTCCGTCTACCGACGCAGCCC 41201 33 84.8 28 .........A....A..............AG.G TGACCATGAGCTGTGCCATGGGGCCCAG 41262 33 97.0 28 ..................A.............. AGGAGGGATTCTGGGTCGGCGCTTTGCC 41323 33 87.9 0 ..............T.........C....CG.. | G [41354] ========== ====== ====== ====== ================================= ============================ ================== 7 33 90.5 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGTTCA # Left flank : TGGTGGTTGTTGGCCGGCCGCTGGTCCATGGAGTCCTCCCCGCCGACGCGGGGGTGTGCCGTGGTGGGACCAGTGGTGGCCGGCCAACCAGCCGTCCTCCCCGCCGACGCGGGGGTGTTCCGCGGTAGTCGCGGCGGGTGATCTGCGCGCCGCCGTCCTCCCCGCCGACGCGGGGGTGTTCCGGGGACAGCAACGGACACGAACGTCGTCGTCTCGTCCTCCCCGCCGACGCGGGGGTGTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCGACGCGGGGGTGTTCCGATGTTCCCGAGCGCCTCCTGGCCCGCCATCGA # Right flank : AGGTTGCTACTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGTTCCGCTGAGCGTCGCCTGCACGCCGAGGGAGTCGGCGTCCTCCCCGCCCACGCTGGGGGTATTCCGCTCGGCGCCGGCAGGCTGTACGACTCGGGCCAGCACTCCCTGCCGACGGGGGGGTCCGTAGTGGGTCCCGGTCCTCCCCGCCGACGCGGGGGTGCTCCGCCAGGCGCGTCGTACGTGATCATCGTCGCTTGTCCTCCCCGTCGACGCGGGGGTGCTCCGAACAGGCCGCCGGCATCCACCACGAGCCGTGCGTTCTCCCCGCCGACGCGGGGGTGTTCCGCGGTCCCCTCTGCCTCGCTCTTGCCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [23.3-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 42661-43608 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL585951.1 Streptomyces sp. NRRL S-474 P279_Doro1_scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 42661 33 90.9 28 .............................AG.T CTACGACCTGCTGTGGATGCCAGGCGAC 42722 33 93.9 28 .............................TA.. AACCACCACTGTCAGACCCTCGCCGTAC 42783 33 100.0 28 ................................. TGACTCAGGTCCGCGACGTGATCCGCTC 42844 33 87.9 28 .............................ATCG AGATTCTGGGCGCGTTCGGTGTCCCGGA 42905 33 93.9 28 ........................A....C... GGGTCGAGGACTCCGCCCCGTACGTGCC 42966 33 81.8 29 ........GA...............C...A.AG TTCTCGTTCCGGGTCGTTGGTGCCGGAGT 43028 33 90.9 28 ...........................T.T.T. TGTACATCATCGGCGTACCGTCGTCGAG 43089 33 93.9 27 ........................C.......T TGCGACACCAGGGGCGAACTCGGCGAT A [43118] 43150 33 90.9 28 ........................A....T.C. GGCAGGTGCACTGCAGGGTCGCGCCGTC 43211 32 93.9 29 ..............T..............-... ATCACCTGATCGAGCCGGTGCACGTTGAG 43272 33 84.8 29 ...........T..T.T............AT.. CTGCGGCTAAGCCAGCCACCTCCGGGAAT 43334 32 84.8 28 ...........A.T...-............AC. CCGAATTCGTTGCGGTCGACTACTGCGG 43394 33 87.9 27 ................A.......A.....TC. TGGAGGCCGGGGCCAACCCGGCCGCGT 43454 33 78.8 28 .G...........G.....A....A....AAC. TGGCCACCGCCTCGCACATCGAGGGCGC 43515 33 78.8 29 .C............T.......GT.....CT.T AGCGCGACGCGGCGCTGGAGCAAGTTCCG 43577 32 93.9 0 .................-...........C... | ========== ====== ====== ====== ================================= ============================= ================== 16 33 89.2 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGC # Left flank : GCCGACGCGGGTGTTCTCTTCCAGCCGCAGCACGTGGGGGTCCTGGGCCCCCGGCCGACGCGGGGGCATTCCGACGCCGACGTCGGTGCGGGCGGCCTTCTTGAGGTCCTCTCCGCCGTCGCGAGGGTGTTCCGTTGTAGCCGACGCCCGGACCAGCCCTGGGCCAGGTCTTCCCGCCGACGCGGGGTGTTCCGCTGCCGTCCGCGTAGGGCACGACGGTGCCGGCGTCCTCCCCGCCGACGCGGGGGTTTCCGTACCTCGCGGGGGAAACTCTCACCGTGACCGAGCCCTCCCCGCCAACCTGGAGGTGTTCCATCGGTGTAGGCGAAGTTCACGAAGGTGCGGCGGTCCTCCCCGCCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCG # Right flank : CCGGGGCTACCACTCAAGAGTGTTGGCGTGTCCTCCCCGCCGACGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGATCCGGTGACCGTCAGGGTGCCGGTGAGCTTCTTCTTGTCCTCCCCGCCGACGCGGGGGTGATCCGACCACCAAGGCCGGTTCCCGGTGGGTCTCGACGGTCCTCCCCGCCGACGCGTGGGTGATCCGATCTCATACTTGGTGACGTGCGGAATCTTCGTGTCCTCCTCGCCGAGGCGAGGGTGATCCGCCGCTGCAGTCCCAGCTGGGGTTGCCGTGCTGTCCTCCCCGCTGATGCGGGGGTGTGCCGTCCTTCAGCGCCTGCCGACGCAGGCCCGCCGTGTCCTCCCCGCCGCCACGGGGGTGTTCCGTTGTCGCCGTCCAGGACGACGAACCAGAACGCGTCCTCCCCGCCG # Questionable array : NO Score: 3.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:-1.5, 6:0.25, 7:-0.01, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGGCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.30,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 4 43790-44490 **** Predicted by CRISPRDetect 2.4 *** >NZ_KL585951.1 Streptomyces sp. NRRL S-474 P279_Doro1_scaffold6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 43790 33 87.9 29 ........................A....AC.A CCAAGGCCGGTTCCCGGTGGGTCTCGACG 43852 33 87.9 28 ..................T.....A....AT.. CATACTTGGTGACGTGCGGAATCTTCGT 43913 33 87.9 26 .......T......G...A.....A........ GCAGTCCCAGCTGGGGTTGCCGTGCT C [43943] 43973 33 84.8 28 ...........T..T..........G...TC.. TCAGCGCCTGCCGACGCAGGCCCGCCGT 44034 33 84.8 28 .............C.A.............TTG. CGCCGTCCAGGACGACGAACCAGAACGC 44095 33 100.0 28 ................................. CAACGGCCTGCGTCATCCTCGTTGGCTT 44156 32 90.9 28 .................-............C.C GACGCCTGGAGACATCGGGGCTTCCTTA 44216 33 87.9 28 ........T.....................AGA GTTCATGATTAAGGCCGGACATCTGTAC 44277 33 93.9 28 .............................A..G GCATCCCGCTCGGGCGGATCACCGCGAC 44338 33 87.9 28 ..............G..............GTT. CGAGCTCGCGCTCGAGCCACGCGGCTCG 44399 33 87.9 27 ...A....T.......T..............A. GAGGACGCCGAAGTGGTCGAGGACTCC C [44429] 44460 31 78.8 0 ............--.AA....A.......A..G | ========== ====== ====== ====== ================================= ============================= ================== 12 33 88.4 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGCT # Left flank : GGGGTGTTCCGATGCCTGCGGCTAAGCCAGCCACCTCCGGGAATGTCCTCCCCGCAGTCGCGGGGTGTTCCGGACCCCGAATTCGTTGCGGTCGACTACTGCGGGTCCTCCCCGCCGACGAGGGGGTGATCCGGTCCTGGAGGCCGGGGCCAACCCGGCCGCGTGGCCTCCCCGCCGGCGCGGAGGTGATCCGAACCTGGCCACCGCCTCGCACATCGAGGGCGCGCCCTCCCCGCCGATGCGGGGGGTTTCCGCTGTAGCGCGACGCGGCGCTGGAGCAAGTTCCGGTCCTCCCCGCCGACGCGGGGTGTTCCGCCGCCGGGGCTACCACTCAAGAGTGTTGGCGTGTCCTCCCCGCCGACGCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGATCCGGTGACCGTCAGGGTGCCGGTGAGCTTCTTCTT # Right flank : GGTGAGCCCGGCACCGGACGCAAGATCCGGACCTTGCCAGCCGACGCGGGGGACGGGCGGTCGCGAGTTCAGCGGGCAGGCCTGCGGAGCCTGTGGCCCGATATGCTGGAGGCGGAGTTCCTCTTCGTGAGGGTCTTTGGTTGGCTGGTGCCCTTGCCACCCGCTCTGCGGATTGGGCGCCGGCCGCTCCCATTTGAGGCCTCGCCCTCGCCGAGCGCCCGCAGCCAGCGTCTGTCAGCACGGCTCGGCCAGCACCAGGTGCGCGCAACCGGCAAACCATGCTAAGCCTCGTCCGCGCGGTGGGAAGCCAGACCGAGTAGTCGGGCAGATGGGGATGAGGGGCCGGCCCTGTTGGGGGTCGGCCCTCCTGCTGGCCGTCAACTCCCATGGGATCTTGTGCCGACGTGTTCAGCGTTTCGCGGTGTCCAGCTGCTCGGGGATGGTCTGCCTGTGCTCACGGTCGGCTCCTCTGGTGTCCGGGGAGGTGTACGGGCCGGGCG # Questionable array : NO Score: 3.33 # Score Detail : 1:0, 2:3, 3:0, 4:0.42, 5:-1.5, 6:0.25, 7:-0.02, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [26.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //