Array 1 51135-51468 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKS01000026.1 Salmonella enterica strain BCW_5100 NODE_26_length_51505_cov_7.53221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 51135 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 51196 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 51257 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 51318 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 51379 29 100.0 32 ............................. TTGTTGCAGGCGGGAGAACGCAGCGCGTACCC 51440 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : CCTGCCGTCGCCGTCGCCATATCCGGCGCTGTGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 419-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKS01000400.1 Salmonella enterica strain BCW_5100 NODE_400_length_434_cov_1.55858, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 418 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 357 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 296 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 235 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 174 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 113 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 52 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATTATATCCGTTTAG # Right flank : GAACAGGAACAGGAAAAAAAAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-20.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 317-44 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKS01000480.1 Salmonella enterica strain BCW_5100 NODE_480_length_356_cov_1.59862, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 316 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 255 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 194 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 133 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 72 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATAAACCGGCACTATTTCGAATGTCTCGACGCCAGATTT # Right flank : GAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 873-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKS01000149.1 Salmonella enterica strain BCW_5100 NODE_149_length_910_cov_1.34875, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 872 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 811 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 750 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 689 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 628 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 567 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 506 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 444 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 383 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 322 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 261 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 200 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 139 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 78 29 96.6 0 .................A........... | ========== ====== ====== ====== ============================= ================================= ================== 14 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGA # Right flank : GGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 246793-242919 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKS01000005.1 Salmonella enterica strain BCW_5100 NODE_5_length_264457_cov_7.68727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 246792 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 246731 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 246670 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 246609 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 246548 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 246487 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 246426 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 246365 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 246304 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 246243 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 246182 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 246121 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 246060 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 245999 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 245938 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 245877 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 245816 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 245755 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 245694 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 245633 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 245572 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 245511 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 245450 29 100.0 32 ............................. TTATCACCTGAATGAGTTATATAGCGTTTTCC 245389 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 245328 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 245267 29 100.0 32 ............................. CCCCCACCAACCCCGCACCGCGCTGGCTAAAA 245206 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 245145 29 100.0 32 ............................. AACTGGTGATGTGTGAGCCAAAATTACGTGAC 245084 29 100.0 32 ............................. AGGCGATCGACGCGGAACTGGTGCGCGGTGAA 245023 29 100.0 32 ............................. TGGATGTGTACGCCGCCTCGCCGGATGAGGCG 244962 29 100.0 32 ............................. ATCGGCATTTCTCCAATCATGCAGCATGCGCA 244901 29 100.0 32 ............................. TTGTTGATTTTGTCGAAGGTCTTGAGCAGTGG 244840 29 100.0 32 ............................. ACAGGTAGATCATTTATTAATCAGAATTAACA 244779 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 244718 29 100.0 32 ............................. GTCTGTCTTTATTCCGTGATAGCGCCACTCAA 244657 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 244596 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 244535 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 244474 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 244413 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 244352 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 244291 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 244230 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 244169 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 244108 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 244047 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 243986 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 243925 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 243864 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 243803 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 243742 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 243681 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 243620 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 243559 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 243498 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 243437 29 100.0 32 ............................. CATCCCCGCGCAGCGCTAACGTCCAGGCATAT 243376 29 100.0 32 ............................. GATGCCCGGGGAAAACTAGATACCACCGCAAA 243315 29 100.0 32 ............................. CCATTTTTGCCGCCATATGCAGCTCGACGACA 243254 29 100.0 32 ............................. GGCGAACCCGCAACGGCACCGCAGCCAATGAC 243193 29 100.0 32 ............................. GGAGTAAAGGGGAATTTTTGGACATGTCGCCA 243132 29 100.0 32 ............................. ATCAGCTGCTCGCTGTAGGACATTTCTGTGAT 243071 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 243009 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 242948 29 96.6 0 ............T................ | A [242921] ========== ====== ====== ====== ============================= ================================= ================== 64 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 264420-263416 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKS01000005.1 Salmonella enterica strain BCW_5100 NODE_5_length_264457_cov_7.68727, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 264419 29 100.0 32 ............................. CCTGCCGTCGCCGTCGCCATATCCGGCGCTGT 264358 29 100.0 32 ............................. GGCCACTTATCAGCAAACCGGGCATCCAGAAC 264297 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 264236 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 264175 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 264114 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 264053 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 263992 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 263931 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 263870 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 263809 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 263748 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 263687 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 263626 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 263565 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 263504 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 263443 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAACCGCCTGCCGTCGCCGTCGCCATATCCGGCGCTG # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 525-7 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYKS01000170.1 Salmonella enterica strain BCW_5100 NODE_170_length_847_cov_1.27436, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 524 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 463 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 401 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 340 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 279 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 218 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 157 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 96 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 35 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAG # Right flank : GTGGATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [6.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //