Array 1 7-463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000055.1 Carbonactinospora thermoautotrophica strain UBT1 contig01071, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 ............................. CCGCGCGAGGGCCGGGACGACAACCCGAGCCT 68 29 100.0 32 ............................. TTCGCCATGATGGTTCTCGCTCCTTTCGTGGA G [90] 130 29 100.0 32 ............................. CCCACCTGTACGGGCTCGGCTGGGAAAACGCC 191 29 100.0 32 ............................. TTCCCACCCAATGCCTGACCGTCTGTGCCCCG 252 29 100.0 32 ............................. CCGTAGTGCCGGCGGCGGCACCGCTGACCCCG 313 29 100.0 32 ............................. GCCGACTCCAAACAAATGGTGGCCTGGTACGG 374 29 96.6 32 ............................C ACGCGATGGTGCACATCCGCCACAGCGACGAC 435 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.2 32 GTCCTCCCCACGCACGTGGGGGTGAGTCG # Left flank : GCGACCG # Right flank : TTTCTCCCCGGCGCGAGAGGGGGAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 613-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01001023.1 Carbonactinospora thermoautotrophica strain UBT1 contig00102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 612 29 100.0 32 ............................. TGGCTGAGAGCCACGGGCGGAAAGGGAGTCCA 551 29 100.0 32 ............................. CTGCACCAGGGCGCGAGCCTCGGCCACCTCGC 490 29 100.0 32 ............................. GCTGATTGTCCTGGTCAGAGCCCTCTTCCTGC 429 29 100.0 32 ............................. AACGCGCCGTCCAGCCAGCCCGAGCCGGGACC 368 29 100.0 32 ............................. GCAGCATGCGCCACGTCGGCCGCGGACGGATG 307 29 100.0 32 ............................. TAGTGGGCGAACCGCTGGCACTGCCTGGTGTT 246 29 100.0 32 ............................. CCCGAGCTGCGGGAGGAGTACACCGATCTTGC G [229] 184 29 100.0 32 ............................. AGCGTGTGAAAGCCGAGGCCGGGGTCATCCGC 123 29 100.0 32 ............................. TAACCCAGTTGCTCATGCTCTGCGATGTAGAC 62 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTCTTCCCCACACGCGTGGGGGTGAGTCG # Left flank : ACTACGGCAACGAGCCAGCCGACCTCGAGGAAAGCCCATGGTGACCAACCGACCTGGAGGGGACTGCCGGTGCCGTCCATGATGGTCCTCGCAGTGACCGCGGTCCCACCCCACGTCCGCGGCGCGCTCAGCCGATGGCTCGTCGAAGCAGCACCCGGCCTCTACGTCGGGTGCGTCTCCGGCCGCGTCCGTGAGGAACTGTGGACCACCGTCAGCGCAGTCATCGGCGACGGTGCCGCCGTCTGCGTTCACCCCGCCGACACCGAACAAGGCTACGAGCTGCGCACTGCCGGAACCCGGCGCCGCGAACCCATCGACCTCGACGGCCTCACCCTCATCCGCTTCCGAGCCCCCGAACAACCCACGAGCACATCCGAACCGGAGTTCCCGTGGTAGCGACCCTGAAGAAACGAAAACACCCTCGCCCCAGCCCCACCCTGCCCGACCGTGCCGACCCCAAAATCCGACACCAGCCGCGGTAACATCGCAGGTCAGGAAGT # Right flank : GTCGGCGAGTGGCGGGAGGGTGACGTATGGGCCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [15.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 9726-10059 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01001023.1 Carbonactinospora thermoautotrophica strain UBT1 contig00102, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9726 29 96.6 32 ............................G CGTTTTGTGAGTCCGTGGCCCTGACGATGCAC 9787 29 96.6 32 ............................G TCGGCCATGCGCGGCCGCGCGGTGAGTTCGGC 9848 29 100.0 32 ............................. GTCCTCGACGCGAACATCTACTACCTGAACGA 9909 29 100.0 32 ............................. CAGCAGAGCCAACAGCAGGGCCGCGCCCGCCA 9970 29 100.0 32 ............................. GAGTCCTTGTCGGGCCGCTGAGTGGCCAGGAT 10031 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.3 32 GTCCTCCCCACGCACGTGGGGGTGAGTCC # Left flank : GCCGCCATCGACCAGAGCGGCGAACGCATCGGGATTGATGGTTTGAAAACCCGGGATCGCCTTGCCGATGTCGTGCAAGCCCGCCCACAACGCAACCAGCCGGGCTGCCTGCTCTTCGTCGGCCAAGCCCAACCCGTGGGTGATCCGGCGTCGCTGCCCTGGCGACAACACCAGATCCCACAGCGCCAGCACCACCGCCGCCACGTCCGCCAGATGGCAGACCAACGGGTACGGCCGCGGCAGACCGCGTGACTTCCCCCACAACAACCCATCTACGCCGAGCGCCATCCCCCCGGCCTCGCCGGACCGCAGGGCCCCCGGCACCTCATGCTGATCGAGCACGCCCCCCTACCTACAGAACCGCGCCGACAACCCAGGTCCTTTGCTTATCTCCTCATCACCCGAACGGAGTAGCAATGGACGTAAATACGACAACAGCCCAGACGACTCCTGGCTTCAAAATCCGCACCCGGGTCCTGTAAAGTCGCAGGTCAGAAAGG # Right flank : TCCCGTTCCCGGACGGGGGTGATCCGCAGTGAGTCCTCCCCACGCAC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2607-3362 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000977.1 Carbonactinospora thermoautotrophica strain UBT1 contig00148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 2607 30 100.0 37 .............................. GCGCTGATTGCGTTGTCTGAGCGGTCCTCCGGCACGA 2674 30 100.0 34 .............................. CGCTTGCCGAGCCAGGCACGGACGGTCATGCGGT 2738 30 100.0 35 .............................. ACGTAGTCATGGCAGCCGCGGCACAACAGGACGAG 2803 30 100.0 33 .............................. TCGCCGACGCGAGGGACGACAACCCGTCCCGGA 2866 30 100.0 33 .............................. TATTCGGCATGCTGGCAGGCGGTGAGCAGGCCG 2929 30 100.0 39 .............................. CCATCCGGGTGAGGCCGCGTACTCGTCACACAGCTCCAG 2998 30 100.0 36 .............................. TAGGGGTCCTCGCACTCGGGGCAGACGGCCGGCGCG 3064 30 100.0 38 .............................. TCGCTGTCACCGCCGTCCACGGGCACGTGGTCGAGCGC 3132 30 100.0 37 .............................. GGCTCGGGGTTGTCGGGGATCATCCCGAGTACTTCCG 3199 30 100.0 35 .............................. GTCGGCAACCGGCCCGCGTACGCCTGATAAGCCTT 3264 30 100.0 37 .............................. CGGGCGGCGGCTTTGGGCATGACGCGGACCTCGCCGT 3331 30 93.3 0 ..........................GT.. | CC [3355] ========== ====== ====== ====== ============================== ======================================= ================== 12 30 99.4 36 GTCCACAACCGCCCGACAGGGCATAGAAAC # Left flank : CGGTGGACACTCAAGCGCGGCCACGAATACGTCCTGAAGCACGCACCCGGCGAGAACAACGCCGAGGCCCCGCTCCGCGCGTGCCGCATGGTCGTCTACGAACTCGCCGCCCCACCCCGTAGGACGAGCCGGTGCCCTGAACCCCGCCGCAAAAACTGCACCCACCCGACAGTCGATCTTCAGGGCCGCCGCCTCCGCGTCAAGGCCAAGCCGCTTCGCGGTCGGCCTTACGGCCGAGCCTTGACGCTCCGGCTCTGGCCCTACGATGCGGCACCTGTCGGGTGGGCGGCTCAGAGTGGCAGCGGCTCGCGTCCGATTTGCGAAGCTTGTTCTATCGGGTGTGCGGGTACGGCGGCCCTGTTGTCGAGGCCGAGCACAACCGAGCAGACTGCCCCGTGTGCAGCGACACGCCGACCCCTGATGCACGACCGGAGGTTCACTGCACATCCGAGCACGACCTAGCCCGGTGGACACGTCCCCACCTGCGGCTTTACCATCGG # Right flank : CAGCAACAGGTGCAGCAACAGCGACGAACAACGGCGATCACAGGTAGTCACCCGCAGCCAGTTCGAGCGCATGCCGAGGCCGCTTGTCTGGCCCGTGCCTGTGCCTGGGGGTCAAGGGGTTGCGAAACTGCGAGAGGCGCTGCAAAGCTGCTGGTCACGAAGTGTCTTCCCCACGCACGTGGGGGTGATCCGGTATGAGGTGTAGTGATCCCAGAAGACTAGCCGTCTTCCCCACGCACGTGGGGGTGATCCGCTGGACGCCGCCGCGCTGTTCGGTGTCGACAAGTCTTCCCCACGCACGTGGGGGTGATCCGGACGGCGCGGCTACCACGCCCCCGGCTGCCAGGTCTTCCCCACGCACGTGGGGGTGATCCGGGGAACGGCTGCCACAGGTCCCACCGGTCGGCGTCTTCCCCACGCACGTGGGGGTGATCCGCAGATGGGCTCGGTGTGGGCACGTCGCGTCGCGTCTTCCCCACGCACGTGGGGGTGATCCGCCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 2 3525-4528 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000977.1 Carbonactinospora thermoautotrophica strain UBT1 contig00148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3525 28 100.0 33 ............................ GGTATGAGGTGTAGTGATCCCAGAAGACTAGCC 3586 28 100.0 33 ............................ GCTGGACGCCGCCGCGCTGTTCGGTGTCGACAA 3647 28 100.0 33 ............................ GGACGGCGCGGCTACCACGCCCCCGGCTGCCAG 3708 28 100.0 33 ............................ GGGGAACGGCTGCCACAGGTCCCACCGGTCGGC 3769 28 100.0 33 ............................ GCAGATGGGCTCGGTGTGGGCACGTCGCGTCGC 3830 28 100.0 33 ............................ GCCAGCGCCGGCACCGCCACCGGAGTCGGCGCG 3891 28 100.0 33 ............................ GACCTGGAGAACCTGGAGCGCCGGGCGGGCCGT 3952 28 100.0 33 ............................ CTCACCGAGGTGGATCGGCCCGTGGGCGCGGTC 4013 28 100.0 33 ............................ GAACTCGCTCTTGCCAGCGCCGGTGACGCCCAT 4074 28 100.0 33 ............................ GCTGCGCCAGGCGAGCGGAGGCCAGTCGTGACA 4135 28 100.0 33 ............................ GATGCTCAAGCTGTGCCGACAGTTGGGATGGAA 4196 28 100.0 33 ............................ GCCGTACTGGACTCCCTCGATTGGGATCGAGGT 4257 28 100.0 33 ............................ CACCAGGCCCTGCTCCGTCTGCGCGACCTCCCG 4318 28 100.0 33 ............................ GCGTTCCATGAAGCGGCCCGCACGGTCGCCCCC 4379 28 100.0 33 ............................ AGCCGCCGGCGCCTGGATCCACGGCCACGTCCG 4440 28 96.4 33 ................C........... CCGACTTGCGAGCGGCCGGTAACCGGGGTCCAG 4501 28 92.9 0 ......T..G.................. | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.4 33 GTCTTCCCCACGCACGTGGGGGTGATCC # Left flank : AACTAGGGGTCCTCGCACTCGGGGCAGACGGCCGGCGCGGTCCACAACCGCCCGACAGGGCATAGAAACTCGCTGTCACCGCCGTCCACGGGCACGTGGTCGAGCGCGTCCACAACCGCCCGACAGGGCATAGAAACGGCTCGGGGTTGTCGGGGATCATCCCGAGTACTTCCGGTCCACAACCGCCCGACAGGGCATAGAAACGTCGGCAACCGGCCCGCGTACGCCTGATAAGCCTTGTCCACAACCGCCCGACAGGGCATAGAAACCGGGCGGCGGCTTTGGGCATGACGCGGACCTCGCCGTGTCCACAACCGCCCGACAGGGCATCCAGGTACAGCAACAGGTGCAGCAACAGCGACGAACAACGGCGATCACAGGTAGTCACCCGCAGCCAGTTCGAGCGCATGCCGAGGCCGCTTGTCTGGCCCGTGCCTGTGCCTGGGGGTCAAGGGGTTGCGAAACTGCGAGAGGCGCTGCAAAGCTGCTGGTCACGAAGT # Right flank : CGCGAAAACCACCTCTGGCCAGCGGCTTTACCCTCGGGGTCCTCATCGCCCCCGCAAGAGATCGCAACCGGGCGATCGAGCGGGGAGCGTGGAGGAAACCGAACGAGCGTAGCGAGTGAGGTTTTCCGTAACGCTCACCACAGCTCGCTCTCCTCTGGCTCTCCTCTGGTCCTCATCATGGGCCTTACGAGGGAAGCGACCGCGCAACGGCAACGGCGACATACGCTGACCGCGCAGACGAGAGAGTCCCGGCCACGATGGCCGGGGCTTCGTCACAAGCGCGCATGTCGAATACGGTCAGAAGTTCCTGTCTGAACCGAGAAGGGCCAGGTCGGCGGCATGATCAGCGCGGTCTGTAAAACCGTCGGCGAAAGCCTACGCAGGTTCGAATCCTGCACCTGCCACCAGGGGCACCACCCAGCAAAGACGCAGCTCAGGGCCGGCCCCCGGCGAGTCCGGGGGCCGGCCCTGAGGCGTCTTCGGGTCACGGCCGTCACCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3151-2877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000948.1 Carbonactinospora thermoautotrophica strain UBT1 contig00177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3150 29 100.0 32 ............................. GAGCCCGGCAAGAGCGACGCGAACCCGGATGG 3089 29 96.6 32 ............................C GCGACGGTACTGTCGGACCTGCGGGCGTGGGC 3028 29 100.0 32 ............................. ATGGCCTCGTGCTTCGGGAGGTGGAAGTCGTC 2967 29 96.6 32 ............................A TACAAAGGCTGGGTGATCGACACGTGGGCGGC 2906 29 93.1 0 ...........A..T.............. | G [2884] ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.3 32 GTCGTCCCCACGCGCGTGGGGGTGATCCG # Left flank : CCGAGGCAGCGCCCCACTTCTTGAGCATGCGCTCCAAGTGGACCGCGGTGAGCAGCCCGTGCGGGGTATCCGTGCGCCCTCCGCCCTTGAACCGGCTTACGTACCGGATGTCCTGCTCGGCCAACTCCCCCAGCAGCTCCACCGCCAAGTCATCGCGCAAGGCCTGAAATGCGGGCGAAAACTTCCCCAGGTCATGTAGCCCGCACAGCACCGCGGCCCAGCCGTCCGCGTCGCCGAGCGGCACGAACGCGGCTCGTAACTCCTCCCGGCAGCGTGGCCCCACCAGCACGCCCAGCAGCCGCTCGGCCACGGCCGCAGTGTCGATCGCATGGCATATCAGCGGGTGCGGAACCGGCTCGTTCTCCGCCTTCCCCCACGCGGCCCGCACGTCCGGCCGCGTGCCGTCCCCCGATTCGATCATGCGCCTCAGTCAAGCACCCGGCGGCGACACCGTCCCGGGAAATCAGCGATCAGGCGCGTAACATCCCAGGTCAGGAAGT # Right flank : GAAAACCCGCTCCGCGGCGTCCTGTGACCACGCCCGGCGGCCTCCTGTGGAAAGAAGCAGAGGCCCGGGTGAGTAGTCACCGGACCTTCGCAAGATACGGTTTCGCTGCCTACCGCTTCGACTTCGTCGTCTCGGCGGCGACGCTGGCCTTCTTGTGGTGGATCTGCGACACCCGCTGAGGTGACAAGCCGACCAGCACCGCGACGTCCCGCACTGACAAGCCACGCGCTCCCAGCTTGTCCACCAGGCCATAGGTGCGGCGCTCCACCTGCCGTTCGGTCTCGCTGAGTTTGCGGCGCCACGTCCGCACTTCAGCGGACTCGGAGTCCACGACCGGGTCACCAGTCCGGAACTCGTAGTCGAGTTCCAGGTCGTCCATCGCGTCGTCGGGCAGATCGGCACCGAGAACGATCGCCTCTCGTACGGCTCGGTCCAGGCTCGTCAGGTTTCGCGCCCAGGTGTGCGTGCCCTCCAGCTCAGGGACGTCGGCAAGCCAATCC # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCACGCGCGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5848-5392 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000867.1 Carbonactinospora thermoautotrophica strain UBT1 contig00258, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5847 29 93.1 32 .......................C....G AGGTCGCTGAGCAGGTGGACCGGCTGCTGGCC 5786 29 100.0 32 ............................. GTGCCGTCCGGTAGCTCGACCTGTCGCATCGC 5725 29 96.6 32 ............................A TTTCTCCCCGGCGCGAGAGGGGGAACGTTCGG 5664 29 100.0 32 ............................. ACTCCGATTCAGGGCTTGCCCTACCCGAGCCT 5603 29 100.0 32 ............................. GCGCTGTCGGTGGCGATGTCCGAGCTGGTAAG 5542 29 100.0 32 ............................. GTCCACCGACCAGCCGAGCTGTCCGGCGTTGG 5481 29 96.6 32 ............................G TCGTACCCGAGATCGCTTCGCAGGTACTTGCC 5420 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.9 32 GTCCTCCCCACGCACGTGGGGGTGAGTCC # Left flank : CCTCG # Right flank : GGGAGACGGAGCGCTCTTGGCGTCTTGAACCGCCCGAGCGTTGGTCCGGAGAACCCAGGTTCTCCGGACCTCTCCTTGCTCCGTGGCACCCTCGCCGCCGGAACCATCCTCACCCATGACCGCCCGTACGGCAGCGAGGGCACCATAGCCCGAACACGCCGACTCTTCACATGGAGGAGGACCGGGCAGACACCGCTACGCTCGCGCCAGCCGCCCTGCCGCTGAAGTTAGGCGTTGGATCGCTGCGTCCGGCTACAGCTCGGCTTCCTTCCACCAACGATCCGTTTTCAGCTCCTCCGGGATCCTGTCTCGGTCCTCAAAAGGGTCGAGCCCGAGCTGTTCGACGCGGGCGTACCACTCGTCCCACAGGCCCTTCGGGAGCTTCGCACCACACCAGGGGCAGTACTCGATCCGACTGATCGAGACCCCGTCCCGGTAGTCGATGCCCCATCTGCGAGTCTTCGGGTGGTAGGAGATGAACAAGTCGGGATCTGCGATCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCACGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-3.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 3086-5117 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000827.1 Carbonactinospora thermoautotrophica strain UBT1 contig00298, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 3086 30 100.0 36 .............................. CGATCCAGCGGGGGGACGTCGAGGCGTACCTGAAGT 3152 30 100.0 37 .............................. CCTTCTATTTCAGCGTGCTCCCGCCCTATTTGGCGGA 3219 30 100.0 38 .............................. ATCATGGCCCGGATCTCCCGGGCACGATCGCGGCAGTC 3287 30 100.0 35 .............................. CCTTGATCTGCTCACGCATGGCTTGGTGCTGTCGG 3352 30 100.0 35 .............................. ACCGAGCGCTGCTCCAGGTCCTCGGCAACCGCGAG 3417 30 100.0 34 .............................. ACCAACGCCAGACGGCCGATCCGGCCGAGCTGGA 3481 30 100.0 36 .............................. GCCATGATCCCTAGCATTCGGCCAGCAAAACCCCGG 3547 30 100.0 38 .............................. TAGACGATGACCGCGCCTCCGCCTCGGTTCGCGAACCG 3615 30 100.0 37 .............................. GCAAGCGCCCTCGCCCACGCCTCATCGGTCTGCGAGA 3682 30 100.0 34 .............................. CCGTTGGTGACACTGCACCAACGTCAGTTTCCGA 3746 30 100.0 36 .............................. AGGACGTCCAGGCGGATGGGCGTGCCGGGTGTAGCG 3812 30 100.0 36 .............................. ACGTATACACCGGCGAGGGCGAGGACCGCCGGCAGG 3878 30 100.0 37 .............................. TCGGGTAGTCGATGACGTTGCCCTCGGTGACCTTGAC 3945 30 100.0 38 .............................. TTCATCCGGGGCGTCTACCAGAAGCCGGCGGACAACAC 4013 30 100.0 34 .............................. TTGCGGTACTGCTTGATCAGCTCGCTCGGGCCCT 4077 30 100.0 37 .............................. GTGAGGCGGGCGAGGTAGGCCGCAGTGGTGGTGGCGA 4144 30 100.0 38 .............................. ATGTGTGTGGGCGAGGGCAGGGCGTACTCGACACGGGT 4212 30 100.0 37 .............................. AGGTACTGAGGACCGACGTACCAGTCCTGGCCATCCC 4279 30 100.0 37 .............................. CAGATACGGGTGATCGGTACGCCTAGGTCGTGCGCGT 4346 30 100.0 37 .............................. ATGCCGAGTCGTACCGCGGGACCGAGGTCTGGGTCGG 4413 30 100.0 38 .............................. ACTACACCACCGACATCGGGCGGGTGCGGCTGCTCATC 4481 30 100.0 36 .............................. CGGCACTGGCCGGCCGGTTGACCCCCACGCGCCCAG 4547 30 100.0 35 .............................. CGAACTTGACCGACACGAATCCGGCGCGTAGGCGG 4612 30 100.0 37 .............................. CACGTCCACTGTGGGTGTGGACAGCCGGGTCAGATCG 4679 30 100.0 38 .............................. TCAGCCTGGAGATGGCACGCGAGGAAATCCAGCACCGG 4747 30 100.0 43 .............................. CCGGCACCCAGGACGCGGCGCATGTCCTCGGCGGCGGTGTTGT 4820 30 100.0 37 .............................. CACGTCCACTGTGGGTGTGGACAGCCGGGTCAGATCG 4887 30 100.0 36 .............................. TTGTGGCAGAACCAACAGCTGATCTGGCACTGAGGC 4953 30 100.0 38 .............................. ACGTTGCGGCCGCGCGGGGTGTAGGCGACCGGCCACGG 5021 30 100.0 37 .............................. AGTGGAACCCGTTCGCCAAGGCGCGCCGGCCGAAGGT 5088 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 31 30 100.0 37 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CGCCCCGGCCTCCGCGCGTCCCGGGCAGCCGCCGGGGCGCGCGAGATCCGGGCTGACAGGCGCACACCATAGGGCCGCCCACCGGCCCGCAGCACACGAGCCCCCGCTTCCTCGCACACGCGAGGGCGCGCGATCGCTCGGGCGCGCGTGCGCGCGCACGCGAGGACGCACGAGAAGCCAGCCGCGGTTCGAGAGGCGGACACGTACCAGGGCACGCCCACCCTGGACCAGCCCGGCGAATCCGGAACGACCAGGAACAGGGCCCGGCCCCCCGACCACGGACTACGATCAACTCACCCTTCCCGCCGGCCGCGCCCGCGACCCCCACCGGCACTGGCCCAGGCGAACCCGAACCCATCCTGTGAAGGATCCTGTAAAGGTGTCCGGCCACGCCGTTCTGCAGCGACACGCCGAGGCCGCGTGCACGACCGGCGGTCCGCTGCAAAACCACCCTCGTTCCACCGAGGGAAACAACCCCCGACCTCGGGCTTTACCCTCGG # Right flank : GCCGGCGAGACGCGCACACGACGGCCCGGCACCGGGGGAGGGTGCTAACGGCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [38.3-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 2894-4448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000768.1 Carbonactinospora thermoautotrophica strain UBT1 contig00357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2894 29 100.0 32 ............................. TACTTGGTCAGCGTCCTGCTGTTCGACTCCAG 2955 29 100.0 32 ............................. GACGCGGAGGTGATCCGGCGCAACCCGTGCGA 3016 29 96.6 32 ............................C ACCGTGTGCTGGCAGGTCGCCGGGGCGGGCAC 3077 29 100.0 32 ............................. CCGACCCCCGCCGAGCTGGCCGACCTGGTAGG 3138 29 100.0 31 ............................. CAATTGGGAGCCGCATCGGGGACAGGGAAGC 3198 29 100.0 32 ............................. TGACCCGGTTCAGGCTGGGCCAGTTGCGTCAC 3259 29 100.0 32 ............................. TTGTGTTCCCAATGCGGGACCCTGCAAGAGTC 3320 29 100.0 32 ............................. GAGGCGGGCATGTCGGCGATGACGGCGGTCCG 3381 29 96.6 32 ............................C CTCGCGGTGACCTGCAGCGTGGCACGCCGGGA 3442 29 100.0 33 ............................. CCACACGTTGAAGCTCCTGGCCGAGGCGCTTGG 3504 28 96.6 31 .....................-....... GCCATGAGCACGCCCGCGTTCAAGGCGGACA 3563 29 96.6 32 ............................T CAAACCGTGTCCGTGCCGGTCAACTGGATCGC 3624 29 100.0 32 ............................. TTGGTTGACGGCGTTCCGGTACAGGGACATCG 3685 29 100.0 32 ............................. ATCTCCAGCAGTGGCACGCCCTTGCGTGGCAT 3746 29 100.0 32 ............................. GCGAGTTCTGGGCGCTCGGTGCCCCGCGCGAG 3807 29 100.0 32 ............................. CCGATCGGGTACCTGTACGAGCCGCCGGGGAC 3868 29 100.0 32 ............................. TTCCCCCAGATCGGCGCGACCGTGTCCGGGCG 3929 29 100.0 32 ............................. TTCTTCCGGATCGAGCACGAGCAGATCTACGA 3990 29 100.0 32 ............................. ACGACCGAGAACGGGCTCGCGGCGGCGGCTGT 4051 29 100.0 32 ............................. GAGGCAACAGCACTACTTCGGTTCATGCGGGA G [4073] 4113 29 100.0 32 ............................. ACGACCGAGAACGGGCTCGCGGCGGCGGCTGT 4174 29 100.0 32 ............................. CCGAGTACCAGCGCGCGGAGAAGCACAGGCAA G [4198] 4236 29 100.0 31 ............................. TCGTAGCCGAGATCCGCCTTGAGGTACTTGC 4296 29 100.0 32 ............................. GTGGCCCAGATCGGCGCGACCGGCACCGGAGA 4357 29 100.0 32 ............................. GTGTCCCGCCCGGCCTGAGTCGACAGGAAGAA G [4374] 4419 29 100.0 0 ............................. | G [4436] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.5 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : GTCCTTCCAGAAGGCGAGCCGGGCGCTCGCGGCGGTCGCGCACGCTCTCGCCGAGGACTACGGCGTCGCGGGCGAACTCCGGGCGGAAGCCCAGCGGATGCCGGGGGACATCCTGGCGGATGTCGGCTACCTTCCGAGCGTCGCCGCCCGCGCCTGGCGGTGGGCGCCGGAGATGCGCGAGGTGGCTCGGACGCTGCGGTCGTGCGGCCTGCCCGGCGACCTTGCCCTGGCCGCGGCCGTCGTGCTGGAGCGCTGGCAGGGGGACAAGGACAGGTTCGACCTGCCGCTGCCCGAGGTGTTCGCGCACCTGCACCAGGCGGGCTGAGCTGCCGAAGGAGCGTGAGTGCTCTGGCCTGCCTGTGCGGTACGTGCGGCTGAGTGCTGTCGTTCGGGTGGGCGGCGCTGGTCCGATGCGAGGTGTCGTTCTGTCTGGTGGAACGGAATCGGTGATGTCGCTGCGGATCTCGCGCGCGGCCGTCTAACATCGCAGCTCAGGAAGT # Right flank : GCAACGATGGCCTTGCCGACCTCTACGGGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2804-2646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000642.1 Carbonactinospora thermoautotrophica strain UBT1 contig00483, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 2803 27 100.0 37 ........................... AACCTGTGGACTTGGCCGACTTGGGGCGCTTGTGGGA 2739 27 100.0 40 ........................... AACGCACGGATCCGCTCGCGGTCCATCGTGGTGGTGCCCC 2672 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ======================================== ================== 3 27 100.0 39 GTCCACAACCGCCCGACAGGGCATAGA # Left flank : GCCCGCCACACAGACAGCAGGCCGGTTGCCCGCCGCACGAACGGTGACCGTCGCCGCCCACCCGACAGGCGATCTTCGGGGCCGTCGCCTGCGCGTCAAGGCCAAGCCGCTCGAGCAACGCTCGAGCGGTCGGCCTCGCGGCCGAGCCTTGACGCTCCGGCTCTGGCCCTACGATGCGGCACCTGTCGGGTGGGCGGCTCAGAGTGGCTACGGCTCGCGTCCGATTTGCGAAGCTTGTTCTATCGGGTGTGCGGGTACGGCGGCCCTGTTGTCGAGGCCGAGCACAACCGGGCAGACTGCCCCGTGTGCAGCGACACGCCGACCCCTGATGCACGACCGGAGGTTCACTGCACATCCGGGCACGACCTGGCCCGGTGGACACGTCCCCATCTGCGGCTTTACCCTCG # Right flank : GGGGCGAGGCCGCCGGCCGGCCTCCCCCTCGGCTTCTTCCCCACGCACGTGGGGGTGAGCGACTGACACCAGCCCCGACACCAACGAGGGCGGATCCGGCTACACGGTGGCGGATCTCGGCGGAACCGAGATCCGCAGGTGAGAAGGCCGGGCACCCGAACGCGCGGGCTCGGCAGGCAAGGGGTCAGGGGTTCAAGTCCCCTCAGCTCCACAAGCTCGGTGGGCCACCGGAGATCTCCGGTGGCCCGCTGGCATATCAGGGGCATCGCCGGTACCGGCGCGCGGAGCGGCTGGGGGAAAGCGCCATCCGGGCGTGGGCGGTGAAGCGTCCCTGGTACCGGGTCGTCGCCGGAGGGCTGTCTCGTGATCCTGGCGGGGTCGCGGGAACGACAGTCGCCCATGATCTGTGATCTTCATCGGTCCTGGTGGAGCCCCTGAGCAATCGGAAGACCGAAGCTGAGGATGGCCTAAGCCTTGGTGCGGCGGTCCGCTTCGGAAGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 497-40 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000590.1 Carbonactinospora thermoautotrophica strain UBT1 contig00535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 496 29 96.6 32 ............................T GAGCAGGACCACGCGGGCGCCGTGCCGGCGGT 435 29 96.6 32 ............................C GGGTGGAACGCGACCGCCCCGACCATTCCCCA 374 29 100.0 32 ............................. CACTACCGGCGAATTCTGCAAAGGCGACGCCG 313 29 96.6 32 ............................C CCGACTCTTGAACCTGAGCTTCTCGTGGTTGC 252 29 100.0 33 ............................. GGAGTGGAAAAAATGCCGATACTCATTCCGGAC 190 29 100.0 32 ............................. GTTGAGCAGTGGCTTTCTGAATACGGAGATGT 129 29 96.6 32 ............................C GACACCGACAACCCGGTCTGCGCGGACAGGCC 68 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : CTCTGGAGCCTGCCGACACCAAGACGATGGCGGTCGTCTTCGCGGACCTGGCTCTAGCCGAGGGCATGAAGGGGGAGATCGAGCCGGCGGTGGTTTTCGCGGAGCAGTCCTTGTCCATCACACACCGTCGAGGCGGTGGCGCTGTCGCCCGGCGTCGCCTGCGTGACCTCGACAAGCTCCTACCCGACGAACCCCGTGGCCCCGTGGCCGAGCTTCGCGAACGGCTCCGCGAACTCCGCGACGCCGCGTAGAAATCGCTGAGAGGGATTTCCGCCCACCAGCGGCGAGGAGGTCACCACTCACGTCGCCGCCCGCGCCTGGCGGTGGGCGTCCGAGATGCGCGAGGTGGCTCGGACGATGTGGTCGCGCGATAGAAGCTGTCGTTCGGCTGGGTGGGCGGCGCTGGTCTGGTACGGGATGTCGTTCCGTCTGGTGGAACGGAATCGGTGATCTCGCTGCGGATCTCGCGCGCGGGCGTTTAACATCGCAGGTCAGGAAGT # Right flank : GGTCCTCTTCCAGGCCACCTTGTGGGGCCTGACGTCCTCC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2051-1718 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000493.1 Carbonactinospora thermoautotrophica strain UBT1 contig00633, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2050 29 100.0 31 ............................. GCACGCCGCGATCGTGTCGTCATCGGCACCG 1990 29 93.1 32 ..............T.............C CGTACCCGCTGGTACGAGATGCGCTGCAAGGC 1929 29 100.0 32 ............................. TACAGCACCGGTCAGATCCTCGGTGCCCAGGG 1868 29 96.6 32 ............................C CATGAGGCAACCCACGAGCCGACCGCCGAGAT 1807 29 100.0 32 ............................. AAGGAGGGCTACTACAGCTCCTTTGACGGCAC 1746 29 86.2 0 ........................GCG.T | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.0 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : CGTGGGGGTGATCCGCTTTCGCTTGGAGTTCGCGCTGTACCAGTAC # Right flank : ACAGCGGTCAGGGCATGTCTTCTGTGTCGAACCGCACGGTCTGAGAGCCGCTCAGCCCAGACGATGGACGGCCCCCGCCCGGGATGCATGGGTGTGCGAGCCGGACAGAAGCCGCACCGCTCCCAGTACCCAGCCACCCGGGAGCAAGAACACCCCCGACAGCACCCCCGGCCAGATGGTCACGCGGCCCGCCCCGATGCCCGAGCCGGTGCGTCCGGCTACAGCCCGGCTTCCTTCCACCAACGGTCGCCGCGAAACGCTTCAGGGATCTTGTCATGGTCCTCAATGGGGTCGATCCCGAGCTGTTCGACGCGGGCGTACCACTCGTCCCACAAGTCTTTCGGGAGCTTCGCACCACACCAGGGGCAGTACTCGATCTGACTGTACGAGATCCCGTCCCGATACCTGATGCCCCATTCGCGGGACTTCGGGATGTAGAGGAGATACAGGTCCTCGTCCGCGACGGCGTAAGCCATCTGGTCGCAGCACTGGTCGTGACC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1777-1504 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000433.1 Carbonactinospora thermoautotrophica strain UBT1 contig00691, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1776 29 96.6 32 ...T......................... TCCAGCAGGCGGTTCTGGTTGCGCCGGTGGTG 1715 29 100.0 32 ............................. TCCACCCCTAGCATGCCGGTGATCTGGACCTT 1654 29 93.1 32 ...T..........T.............. AAGTGGCGCTGTACGGCGTCCTTGGGTGAGCA 1593 29 100.0 32 ............................. TCCAGGAGGACGCCATGACCGCTGTCGCGCAC 1532 29 93.1 0 ...........................TC | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTCCTCCCCACACGCGTGGGGGTGAGTCG # Left flank : TCGCGTCGTAGGCGG # Right flank : CCCCCGCTGATGTGGACATCCTGAGACTGGATCTCGGGGGAAGCCCAGGGTATAGCCGATGCACCCGGGTTGACACCCCGGTTCACGACGGGACGTGAACCGGACGGCGCGCATACGCTCGCTGCGTGATCACTGCCTACGTGGACGAGTCGGCGGCCCTGGAGCTGGGGTGCTACCTGCTCGCGGCTGTGGTCGTCGACGATGCCGACGTCGAGCACGCGCGCACGGCGATGCGTGCCCTTCAGGTCGGCACCGGCAAGTTGCACTGGCACACCGAGGGGCCGGAGCGCCGGCTCAAGATCGTTTCCGAGGTCGCGGCGTTGGGGCACCTCTCGGTGGTCGTGGTCGGCCACGGCGTCGGGCGGCGGCAGGAACGCGGGCGCCGCAAGTGCCTGGAGGTGCTGCTGCCCGAGCTCGCCACCCTCGGGGTCGCCCGGGCGGTGTTCGAGACCCGCGCGGCCTACGACCGGCAGGACCAGGCGATGATCGCCGCCTGCCGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACACGCGTGGGGGTGAGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4505-5257 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01001059.1 Carbonactinospora thermoautotrophica strain UBT1 contig00066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 4505 30 100.0 37 .............................. GAGGTGACCGGGCGTGTATCGACCGACCGCTGACCGA 4572 30 100.0 37 .............................. CTTGCAGGTCGGCGGCCGCGTACAGCGCGCTGTCGAG 4639 30 100.0 34 .............................. ATGCCGGCCAGCGCGCCCACGGCGGGCAGTCCGG 4703 30 100.0 35 .............................. GCGATGCCGAGCCGGGATTTCAGCTCGGCCAGGGT 4768 30 100.0 36 .............................. ATCACGAACGCCTACGACCCCAGCGAGGACAGCGTC 4834 30 100.0 35 .............................. ACGTACACCTGGTGGTGCACGGGGAGCAGTGAGGC 4899 30 100.0 36 .............................. CTCATCTGGGTCTCCTCCTCAGGCGCGGACGGTGCT 4965 30 100.0 36 .............................. TGGCTGTCACCGGACAGGCTCTTGACCTTGCCCAGG 5031 30 100.0 34 .............................. AGGGCGGCGAGTACTGCCCCGGCAGCGGCCAGCT 5095 30 100.0 37 .............................. TCGCCGGCAACGCGCTGGACAGTCAGGACGCTCGCCG 5162 30 100.0 36 .............................. ACGGCCACTTCGGCGGCGCCCCGGTCTACCGCGAAC 5228 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 12 30 100.0 36 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : AGGTCTCCTACGACGAGCTACTGCACCTGGAAGCCCTCAAGCTCACCCGAGCCTGCCTGGAAGGCGAGCCCTACCGACCGTTCCGGATCTGGTGGTGAACCGTGTACGTCATCGTCGTCTACGACACCGCGGCCAAACGCAACCCCAAAGTGCTCAAGCTGTGCCGCAAGTACCTCCACCACATCCAACGCAGCGTCTTCGAAGGCCGACTCAGCGAAGCCCAACTCGTCAAGTTCCGCCACGAGATGGCCAGTTTGATCGACCACGGGTACGACCACGTCACGATCTACACCTTCCCCCCGGGCACCGCCCCGCAGCGCGTCCTTCTCGGCACCGGCCCGGGCGAACCCGAAACCATCCTGTGAAGGATCCTGTAAAGGTGCCCGGCCACGCCGTTCTGCAGCGACACGCCGGGGCCGCCTGCACGACCGGCGGTCCGCTGCAAAACCGCTCCCGTTCCACCGAGGGAAACAGCCCCCGACCTCGGGCTTTACCCTCGG # Right flank : CCCACACACCAGATCGGCATCTGGGGGGTGTCAACGCTTCGCGAAAACTGACCCCCTTCCGCTCCGGGAAAATTGATCCCCTGGGGTCGGGTCAGTTGCGGCTGGCGCGGTTCTCCTTGGCCAGGAGCTCGCGTCGCTGGCGGGTGCGGTAGGAGTCGCCGGTAAGGGTGAGGACCTCGGCATGGTGGACCAGGCGGTCGATCATCGCGGCGGCCACGACGTCGTCGGAGAAGGTCTCTCCCCAGCGCCCGAAGGGCAGGTTCGAGGTGACCATGACCGAACCCTGCTCGTAGCGGGACGCGATGAGCTGGAAGAACAGGTTCGCGGCGTCTTGGTCGAAGGGGATGTAGCCAACCTCGTCGATGATGATCAGCTTGTAGCGGCGGATCTTCTTCAGCTCGGTCTCCAGGCGGCCGGCGTGGTGGGCGGCGGCGAGGCGGGCGATCCAGTTGCTGGCGGTATCGAACAGGACCGAGTAGCCAGCGCGGGCGGCCTTGACC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 7498-7730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01001059.1 Carbonactinospora thermoautotrophica strain UBT1 contig00066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 7498 30 100.0 37 .............................. ACTTACTGCGACAGCACAAGTTGTCCCCGACCGTGGC 7565 30 100.0 38 .............................. CGGGACTGGTTGGTCCCGTAGGGGGTTGCCGTCGGTGT 7633 30 100.0 38 .............................. AGGCAGACATGCTCGCCGCTCAGGTGCTGTCGCGCCCA 7701 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 38 GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CATCCGCTCCTGCCCGGCCGTGACCGGGATCCTCGTCTGGGGGAACCACAGGTCGCACTGGGCGACCTGGCCCGGCCCGTAGGTCACCCGGTCGACCGGGTCGATACCCAGGTACTCCGGCCGGATCAGCGCGAGCCGCTTGCGCAGCGGCGCCATCGAGTACGGCCAGCCGATCCGCTCGGCGATCACCGGGGCCGGCATCCTCGGCCACTCCTTGAGCAGGGCCCGCATCTGCGGCTCGAACGCGTCCGCGACCTGTCCGCGCGAGGCCCGCTCGTACTTCGGCGGCCGGTCCGAGTTCAACGCGGCCCGCACCGTGTTCCGGGCCACCCCCAGCCGACGCGCGATCTCCTTGATGGGCACGCCCTCCGCCCGATGCAACCGGCGTATCTCTGCCCAGTCCTCCACCTTCAGCACCCTCCAAGAGTTAGGAGGGGGTCAAGATTCGGAGACTGCCTGGGGGTCAGTTTTCAGGAAGCAACGACAGGGGGGCACCACCA # Right flank : CGATCGCCGAGGGCGTGCTTGGACAACTCGCGCACCTACTCCTCGCTGGATGACCCGGCGCTTAGGGGAAATGCACTGGCGCCGTGGACTAGGGCGTGTCTTCAAAGGTGGGTGGCTCGTTGAGTCGGCCGTGGTGCGGCGTCATGAGTTGACCGATGCCGAGTGGGAGTTGATCGAGCCGTTGCTGCCGCGGCCGGCCACCGGCCGGCCGCGGGTCGACGACCGGCGGGTGCTCAACGGGATCATCTTCAAGATCCGTACCGGGGTGGCCTGGCGGGACCTGCCCGACCGCTACGGGCCCTGGCAGACCTGTGCGACCCGGTTCCGCCGCTGGGCCGCCGACGGCGCCTTCGCCCACCTGCTCACCCAGGTCCAGGCCCGGGCGGACGCGGCCGGGCTCCTCGACTGGCTGGTGGCCATCGACTCCACCATCGTGCGGGCTCACCAAAGCGCGGCCGGAGCCGGCGGGAAAGGGGGGATCCTGGCCGGGACGAACCGGA # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 269-895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01000210.1 Carbonactinospora thermoautotrophica strain UBT1 contig00916, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 269 30 100.0 38 .............................. GGGTCAGGTCCGCCAGCGCAACGGCCCGCCCTCATACC 337 30 100.0 34 .............................. AGGCCTGTTCAACATGCTCGGCGCCATCCGCTAG 401 30 100.0 38 .............................. GGGTCAGGTCCGCCAGCGCAACGGCCCGCCCTCATACC 469 30 100.0 39 .............................. CGCGGTGAAGGCCGCGGTGAAGCGGGCCATCCCTCGGCA 538 30 100.0 36 .............................. CATGGACTACAAGACGACACGGTCCGGCGTGCACAC 604 30 100.0 36 .............................. TTGGGTATCACGCCTTCGCCCTCACGACACTGATCC 670 30 100.0 34 .............................. CCGTGGTTAACCAGATCCGCATCCGCGCTTGGCT 734 30 100.0 37 .............................. TTGCCCACCGCTCCACCACGTCGGCCCCAGCCGAGGT 801 30 96.7 35 ............T................. CCCTCGGGCGGGTGGCACCTGCTGTACCGCGCCCC 866 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 99.7 36 GTTGCGACCCCTCGTAGGGGCGATGAGGAC # Left flank : CCCTCGTCGACGTCGGCCTGGCGCACCCAGTTACGGATCGCCTGCGCCGACGGCTCGAACTCCCGCGCCAACTCCTCCGGCGTGCGCCCCGAGCGCACCAGCTCGACCATCTGCCGGCGGAACTCCGGCGGATACGGTGGACGACTCCTCGGCACTGTGGACTCCTTCCAGGGACCATCGTCCCCAAGCGATCAGATGTCCACGAGACCGGGGCAAGTCCAGGGCGATGAGGACAGGCCTGTTCAACATGCTCGGCGCCATCCGCTAGG # Right flank : CCCTCTGT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGACCCCTCGTAGGGGCGATGAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 1 3668-3371 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01001043.1 Carbonactinospora thermoautotrophica strain UBT1 contig00082, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3667 30 100.0 36 .............................. TGCCGTGTGGGTGGCGGCTGTGTACTTGTGACGCGC 3601 30 100.0 36 .............................. CCGCTGATGATGCCGCTGCAGGCGTAGGTGATCGTG 3535 30 100.0 38 .............................. ACCAGGTTGCCGCCGTTGCTGAACGCTAGGTTGCCCAG 3467 30 100.0 37 .............................. ACGGCGTCGTCGACGGCGGGGTGCGGGTGAGTGGTCG 3400 30 90.0 0 ...........................GGG | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 98.0 37 GTCCACAACCGCCCGACAGGGCATAGAAAC # Left flank : TGAGATCCTTTCCAGAGAACTTCAGAGCACAGCGGAAAGGCCCCCGACGCACCGGGGGCCTTTCCGCGTTTCGGAGAACTTCGGGACGATCAGAAGGGCGGCTCGTTACTCGTGGCGCCACCGGAGGTAGCCGCTGGCCCGCCAGAGCGAAGCCACCAGTCCTCGTCAGCGCCAGCCGGTACCGGCTGCGCCGTGCCCGCGCGGGTGGCCTTTCTGACCGCTGCGGTGGCCCAGCGCAGCGCCGGGCCGACCTCATCCACCTCGACCTCGAAGCTGGTCTGCTTGGACCCGTCAGGAGCGTCCCAGACCCGCTGGCGCAACCGGCCGACCACGATCACCCGCGCACCGCGAGTGAGGCTTTCGGCGACGTGTTCGGCGTACTGCCGCCAGACGGTGCAGCGCAGGAACAGCGGCTCCCCATCACGCCACTCGGACTGCGCCCGGTCGAACACGCGCGGGGTGGAGCCCAGCGGGTCCGGGCGGACCATGTTGACGATGAC # Right flank : GCGAGGCCGCCGGCCGGCCTCCCCCTCGGCGTCTTCCCCACGCACGTGGGGGTGAGCGACTGACACCAGCCCCGACACCAACGAGGGCGGACCCGGCTACACGGTGGCGGATCTCGACGGAACCGAGACCCGCAGGTGAGAAGGCCGGGCACCCGAACGCGCGGGCTCGGCAGGCAAGGGATCGTGCCCGCTACGTGCCCGATCGGACGGCCGACCACGGCGAAGAACGGTCACTCACGGTCAAGCACGCCAGGAAGCGCCAGGTAGGCGAAGGCCCAGGTCAGACCAGAGGCACGCGATCAGCTTTGCAAGCAGTAGGTCAGCGGTCCGAATGTCGTCACCCCGGCTCGATCTCGCGGTGCCGGGGTGACGCTGCCGCTCCGCTTACGGTCCCCGGGCCGTTAGGTGCCCTGCGATCGGAGTAGCTTGCCACCAGTAATGCGGGCTGGCATAGGCGGTGGTCATGGCCCTGGTGGGAAGCGCTGGGTGAGCCAGGCTTT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCACAACCGCCCGACAGGGCATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.30,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 10669-10458 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYIK01001032.1 Carbonactinospora thermoautotrophica strain UBT1 contig00093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 10668 29 100.0 32 ............................. CCGAACGGGCGTATCCCACCAGGGCGGGGCAG 10607 29 96.6 32 ............................C GTGGCCTCGTGCCGGGCGACGGCGGCGGCGTA 10546 29 100.0 32 ............................. GCGACCCGGGCCGCGGTGAGGGCGTCGGCCTC 10485 28 75.9 0 ...A....-.....T.........GCG.T | ========== ====== ====== ====== ============================= ================================ ================== 4 29 93.1 32 GTCCTCCCCACGCACGTGGGGGTGATCCG # Left flank : CACCGACCACACGAGCGAGCTGA # Right flank : ACAGCGGCCAGGAGATGTCTCCTGCGTCGCCGCGGCCCGAGCAGTCCCCGGGGTGAGCTGTCAGGCGGCCCGCTGCGATACCCGACGCGGTGTGTCCGGCTACAAGCCGGCTTCCTTCCACCAGCGGTCGCTGTGAAACGCCTCGGGGATCTTGTCACGGTCGTCCCAGGGGTCGAGCCCGAGCTGTTCGACGCGGGTACGCCATTCGTCCCACAGGTCACTCGGTAGCTTCCTGCCGCACCAAGGGCAGTATCTGATCTGTTTGAACGAGAGCTCGTCCCGGTGGTCGATGCCCCATTCGCGGTACTTCGGGAGGTAGCAGAGGTGCAGGCCCTCGTCCGCGATGGCGTCCGCCATCTGGTCGCAGCACTGGTCGTGATCCTTGCTAACAGTCATCGTCTCTGAGCTTTCGGTCGGCTGGCCCTTTGATCATCTCGCCGGTGTCCGGGTGGGCGCTGCCCAGATGCTTCCGTGTTTTTTGCTGTAGACCTCCAGGTCGT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGATCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [28.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //