Array 1 397723-398178 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065030.1 Pectobacterium versatile strain F131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 397723 29 100.0 32 ............................. GGGCTTAAATCCGCATTTAGGGCAGATGTAAA 397784 29 100.0 32 ............................. CGGATTCAACTCCTGGCGTGCCGGTTCCGTCT 397845 29 100.0 32 ............................. CGTTCGCAGCAATGCGGCGACTTGCGTAGACA 397906 29 100.0 32 ............................. TTGAGCGTAACGAGTGTACTGTTTCTATTGAT 397967 29 100.0 32 ............................. GAAATAGAATGAACATTAATGAATTAACAATC 398028 29 100.0 32 ............................. TACGATTACAAGCGCTGGGCGCTGAGTATCAC 398089 29 100.0 32 ............................. GCCCGCGATTATTAGCGAGCCGAGTAGTTCAG 398150 29 93.1 0 .........................T.T. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGACGTCTTGTCTGCGGGTGGCATTACGCCGCCGCTACCGCCGGACGATGCACAGCCTCCGGCGATCCCAGAACCGAAACCATTTGGTGACAGCGGTCACCGAGGACAAGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCAGTGTGGTTGCTGGAAGTCAGCGCAGGCGTGTATGTCGGTGATACGTCACAGCGGGTAAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAATATGGAAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTGTTATAAAACAACTCTCTACTTTTAGA # Right flank : GAATAGTAGAGGTGTAAATCATAACGGTTTCCTTATTGTCAACTCGTTCCGTTTACGGCATAGTGTTTTCAATTTGGAAACAACAGGAAAGGCATCAGGATGCATGTTATTCCGCGCGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCTAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTCGAGCGGGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGACAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCCGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCACCTCTCGTAAGGATTATGAGGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 400379-401018 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065030.1 Pectobacterium versatile strain F131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 400379 29 100.0 32 ............................. GATAGGGCAAACCAGATACATAGGCATAAACA 400440 29 100.0 32 ............................. GTGCAGGTGATTTGTATCGCTGGCCGCCACGT 400501 29 100.0 32 ............................. CCAGCGCATCGATCGGGATCGAAAACCTGAAC 400562 29 100.0 32 ............................. CACAATGACAATGAAACGGTATGGCGCTGATG 400623 29 100.0 32 ............................. ATTGTTTTTAGTTTGGTCACAGGAAACAGGCT 400684 29 100.0 33 ............................. ATTCGACCGCTACCCATCGTCGGGATACCACGC 400746 29 100.0 32 ............................. GGTCTATCTATAACTCTGCATCCCACTCATTT 400807 29 100.0 32 ............................. AATATGACGCGTTATAGCCTCATATCAGAGAA 400868 29 100.0 32 ............................. CACACCGTGAAAAAGTTATCCGCAAATTTCCT 400929 29 100.0 32 ............................. CGGAGCTGGTGGCCACTGCGTCGCGCGAATAC 400990 29 93.1 0 ..........T................T. | ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TCCTCTGCTAATTATTTACTGCGTTACTTTACAACGACGGATATGAATTGATTTTTTCCAATTCATGTCAATATACTTGTAATCATTAGATATAGTGGATGAAAAATATTGGCATTTACAGGTTATATCGATATTCGGTTGAGAAAGAATATTTTTAACAGGGAAATGTTTACCGAGAAATAGAAAGAAAAGCGCAGTGGTATAGCTCTTGCAAAAGTGTACAGCGTTTAATTCAGCGACTGAGCGTTTTCCTGCTGTCTGAAATCAAACTGGCAAATCAGGGAAACGTGGTGATGGTGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTGGGATTTTTTATGCCGAAAAAAGTATTATAAAACAATGCTCTACTTTTAGA # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGAGTCAAATTCCGCTTTTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACCGTCACGGTGAGGCGCTATGCCAATGATTTTTGTCTTCCATACGCTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTCTTTGCCAGCCAGCAGGTGATGGCGAAGCGTTCTACCGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAAGCGGGCAGCGGTGCCGTTCCTGCTGGTGAGACGACGCGGTATGATTTCACCCGCATTAGCCCTGCTGAACTGTATGAAACGGTTGAAGGCCTTGTCAGCAGTGGTCGGCTGGGGCGTGAAGAAGGCTCCGCGCTGCTGGGTTTTGTCTCGTCGCCGAGAGCCGAAGGAGGAAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3896519-3894747 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065030.1 Pectobacterium versatile strain F131 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3896518 28 100.0 33 ............................ TGACTCGGCAGCAAGCCTGACGGTACTTCTTTC 3896457 28 100.0 32 ............................ TGACAGCCCGTTTCGTCGTTATGGCGATGTCG 3896397 28 100.0 32 ............................ CTCATATATCCACATAGGCAACCCCATTTTAT 3896337 28 100.0 32 ............................ ACCAAATAATAACAGGCCCATAATGTCATCAA 3896277 28 100.0 32 ............................ TGAGACTCGACAGCATCTATAAACGTTTTTGA 3896217 28 100.0 32 ............................ TGGATTCTGGAGGAAGGCCGTTGTCGATATTT 3896157 28 100.0 32 ............................ GGAGAATTTGCGATAGCTGGCAAGACGTATAC 3896097 28 100.0 32 ............................ TATAGGCCACAAGATACCATACGGAGCTGGAC 3896037 28 100.0 33 ............................ TCAGATTGTTTAAATGAATTCATGATCTCCGAT 3895976 28 100.0 32 ............................ GCTAGAAGGATGATCGCATGACGCACTTTCAA 3895916 28 100.0 32 ............................ TACGCAGAAATCATTGTTACAAAAAACCGATT 3895856 28 100.0 33 ............................ TTCACCTACAACGTTGGCGCTGGCTCTCTGAAT 3895795 28 100.0 32 ............................ TGTTAATGCGTGGGACGAATTTGGGACACAAA 3895735 28 100.0 32 ............................ TGACAAGCTACGACAACATGGACGTCACTATC 3895675 28 100.0 33 ............................ GCAGGCTACGCAGCGGGCCATATCTGGTACCAA 3895614 28 100.0 32 ............................ ACGTGGGAATCGTCCTCTGTAATCTGGCAATT 3895554 28 100.0 32 ............................ TGTAGATCGGCATTTTTTTGACTCCTTACCGA 3895494 28 100.0 32 ............................ TAGCCTGAGATTTATCTATCCATCGAACCCTA 3895434 28 100.0 32 ............................ GGCACCGTGTAAGCCAGACTTACAGCTTGCGG 3895374 28 100.0 32 ............................ TCAGTGAGATAATCGCCGTCAGGTGTTTTTAC 3895314 28 100.0 32 ............................ TGCCGCAACTCACGCACCGCGCCGTCTATGTC 3895254 28 100.0 32 ............................ GAAATGCCACTTGCGTAGCGCAGCTTCAACGT 3895194 28 100.0 32 ............................ GCGTCTGTTTGTTGGCCGCATGATTTTGGGAT 3895134 28 100.0 32 ............................ AGACCGTATCCATGCCCTCAGCGGGCACGTCC 3895074 28 100.0 32 ............................ TGAGTATTACGGACAATACCGCCGCCGCACAG 3895014 28 100.0 32 ............................ CGGAAGATGAATATAAGCAACACACGGAACTC 3894954 28 100.0 32 ............................ GCCATCGTTAAATCTGGATTCCCACTGCTGAC 3894894 28 100.0 32 ............................ TTACCGACCGACGATGCTGATAGACCGGATGT 3894834 28 100.0 32 ............................ AGACAGTAAGGGATGGTAAAAATATAACAATT 3894774 28 78.6 0 ...........C........T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAGCATGACAACGCTGGTATTGGCGATGGGGATATTCCAGTACAGGGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGCTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAGTGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAATTATTTAATAAGAAAAAATGTAATCTTCAGAAAACTAACGGAAATCAGACTATCACAGCCGTATATAAAAAATGATGACTGCAAAAAATATTACCGAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACGAAAGGACGAAAAAAAAGGGTTTTTGCGGCGAAAATGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTAATCGGGCAACG # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAAGTAGTACTGCGCCAGCGCTCACCCTCGTTAAATGACGCATATTGATGGCCTTATTCCGTAACGTTTTTAAGTAATGAGTTTATTTTAGAGGGAATGAAAAATTGTGGGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTATAGGGGAATAGCACGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAACGAAATAAATAACGATAATATTCATGCCATATTGACTGCGCAGGAAGCGATGTATTTTTTAAAGACGTTATGCACACCCAATCCTAATGACTCCTGGAAAACGGCAATATTTGGTTGTACCGACCCCATCTCATCGTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3905472-3906218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065030.1 Pectobacterium versatile strain F131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3905472 28 100.0 32 ............................ GTCTCGCGAGCACAGAACCACACCAACAATAA 3905532 28 100.0 32 ............................ TGCGAAATGTGATCGGCAAGCATTTCGCGGAT 3905592 28 100.0 32 ............................ CGAAGACGGCTTGGCCGATTGTGCATTCTTTT 3905652 28 100.0 32 ............................ GCGTTAGAGCTGGGCTGTGTCGCACCAAAAAA 3905712 28 96.4 32 ...........C................ TGCGATTTATTCGGCTTACTGGCACCTTCCTT 3905772 28 96.4 32 ...........C................ GCAGCAAGCGCGGCAAAAACCGAGGCCGCAAT 3905832 28 92.9 32 ...........C.....T.......... AGAGAAGGTGAAAGCCATCGTTAACACCACAC 3905892 28 96.4 32 ..........A................. AAGTCTGAGGCGATCAGTTCAGCCAGGACATA 3905952 28 100.0 32 ............................ TTGATTTCGCCGCCGCTTGGCTACCGTCGAGG 3906012 28 92.9 32 ...........C.C.............. TGTAACCAGCTTCGCTGGGCTTCCGGCGGGAT 3906072 28 100.0 32 ............................ AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 3906132 28 89.3 32 ..........AC.C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 3906192 27 82.1 0 ............GC.......-....TG | ========== ====== ====== ====== ============================ ================================ ================== 13 28 95.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACACTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAGTGTAAAGCCGTACCTAACGGTGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTGCGCCGACGCTCGGTCAGCAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGTATCCCCGATGCCGTGGAAAAACGCAGCGCACTGCCATTTGTGCAAATCAAAAGCTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAGCTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTGGTTAGCGTAAAACCTTAACG # Right flank : GCTTATCAGAATGCGTCGCTAGCGCGACGCATATCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGATCGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGGGCGGGCATGTCGTCGCTACCTTCATACGTATGGCGGTAGTACGGTTCATCCTCCGGCACCAAGCGATTAAAGAAGCTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGCTTGATGAATACCTGCATCAACCCGATTTTTATCTGGCGCAGTGCGACAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //