Array 1 10055-12483 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCQU010000061.1 Phocaeicola vulgatus strain DFI.1.127 NBPAPLMH_61, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 10055 47 97.9 30 ...A........................................... AAGTTTTTAAAAGTCCTTCAGTACTTTTAT 10132 47 100.0 30 ............................................... AGTCCGTTTGAGAATGAATGATACTCCCGT 10209 47 100.0 30 ............................................... TTCTTTCTTTGTCTGAAAGTTTGACGCAAG 10286 47 100.0 29 ............................................... CCACTCTTTTAGACCTACATGTTGCGGTT 10362 47 100.0 29 ............................................... CTCGAGGTCTATCTTCATTGTGGGATTCG 10438 47 100.0 30 ............................................... TAGAATACAGAGATTTAACCAAGTATTTAT 10515 47 100.0 30 ............................................... ATAGCAATACTATTGAATTTGACGATGAGG 10592 47 100.0 30 ............................................... ATGACAACAGAAACACATAATTGTCTATTA 10669 47 100.0 30 ............................................... TAAGAGTTGGAAGTTCGGTCGTTCAGATTT 10746 47 100.0 30 ............................................... AAACAGGGATATAATAATGGTATTCATCAC 10823 47 100.0 30 ............................................... CTGAGTGATTTTCTCTTCCGGTCGCTTGCT 10900 47 100.0 29 ............................................... TACTCGTAGGAGTTGAACGGGGAATCATT 10976 47 100.0 30 ............................................... CTTTTTCACAGGTTCATCTTCCACCAGCTT 11053 47 100.0 29 ............................................... AGTATGGAGTGGTCCAGATGAACCGATTT 11129 47 100.0 30 ............................................... GTGAAGCGGTTACAGTCAGTGCGCTCCTGA 11206 47 100.0 30 ............................................... ATGCGGAGAAGAAGGGATATAGCAGTCGTC 11283 47 100.0 30 ............................................... ACTTCGTCCGAAAACGTGGTTTGGATGAGT 11360 47 100.0 30 ............................................... ACCGTTACAATGGAACATACTGTTTGAATA 11437 47 100.0 30 ............................................... GACATCGTGAAGTCAATCACAGGCGAGCCG 11514 47 100.0 30 ............................................... CCTGGCTTCTGGTCGTCAACGCTGTACTTC 11591 47 100.0 30 ............................................... CCAGCGCTGCAAGTATTCAGTTGCACGGAG 11668 47 100.0 29 ............................................... GGATCCAGCCAGAGCGGCAGAACCTTGAA 11744 47 100.0 30 ............................................... ATCCGTCTCAATCATATTCCCTTTGCCAGT 11821 47 100.0 30 ............................................... TGGTTTATGCTAATGACGAGTTCTGTATGA 11898 47 100.0 30 ............................................... AACAAGGACAATAAAGAACTATACAAACTT 11975 47 100.0 30 ............................................... TGACGAATCAAATGTTATGTTTATCTGTAA 12052 47 100.0 30 ............................................... AAATCGAGCAGACGGCCACCACTCCGCAGA 12129 47 100.0 30 ............................................... ACATATACGCACTGAAAACGCAGCTTATCT 12206 47 100.0 30 ............................................... TATCGGCCATTCTCTCCATACTGGATTTGC 12283 47 100.0 30 ............................................... GTACCCGTGAAAGATGAGCGTTTCGGTATT 12360 47 100.0 30 ............................................... TATCCATTAGTGCTGAGGATGCTATACTTA 12437 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 32 47 99.9 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Left flank : CCTCCTTATATAAAGGAGAGCAGAGAGGATTCTATCAAAAGGGTAAAACGATATAAAGAAGAACTTAGAAGAGATTCTATATTCTTTGCTAAAGTAGATTCAATTAAATTACTAAGGGATTCACTTAGAAATCAAAGAATCTATACCTATATCTTGAAAACTACTATCACACCAGAAAACGTAATAGTTACTGCAAGGAAATCTGGTTATCAACAAGTAACTTTAGATACTCATTATACCAAGCCACAATTATATTACTTGGTATTTACTTCTACCAAACAAATGTCAATAGAAGAGGCATCTGCTTATGCCGATAGGAATCCTGATAAAGTTACTAAGCTATCACAACAACAGTATGATCAGAGATTTGGTAATCAATCATCAGAATATGATTTCTATCTTGATAACCTAGATTCTTATTATGATGACCCAGAAAACCTAGATGAGAACCCAGATGAAATTTTTGATTTCTTACTCGACTAGGGATTTTCAGCTAATAT # Right flank : CAGAATATATGTTACAAACTAATTACCAATTAGTTACACACATATTCAGGAATTAAAAACAAAGTTGTTATCTAATAAGAAATCCCGTTTCAGACGGGATTTCTTATTTTTAAAATAATTCCAATTGCTGTCCTGGAGTAGTTACACCTTGTAGTTTCTTTCCATAAAAAAGTTCAATAGCAGCAAATTGTTTATCAGTGATACACATTATTCCCACTTGTCCATATTCAGGCAAAAAAGATTTAACTCTATTTATATGAACAGTCGCATTCTCGCTACTAGCACAATGACGGACGTAAATTGAAAACTGAAACATTGTAAAGCCATCCTTTTGTAGATTTTTTCTAAAATCAGTATAAGCTTTCTTGTCCTTCTTAGTTTCCGTTGGCAAATCAAATAATACTAGTACCCACATAATCCGATATTCACTAAAACGGTCCATTATCGTTCGGGATAACTAATACGACGAATTTCTCCACAAAAACATTTATATAGAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //