Array 1 171252-172866 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMV01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171252 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 171313 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 171374 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 171435 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 171496 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 171557 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 171618 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 171679 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 171740 29 100.0 32 ............................. ACCTGACATATTCTGCGGGCGGCAGTAAATAC 171801 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 171862 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 171923 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 171984 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 172045 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 172106 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 172167 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 172228 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 172289 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 172350 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 172412 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 172473 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 172534 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 172595 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 172656 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 172717 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 172778 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 172839 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 189374-191904 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZMV01000002.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5462412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 189374 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 189435 29 100.0 32 ............................. CCCCCTCCCCTACTCCGCGCCGGAAAAAAAAC 189496 29 100.0 32 ............................. TTCTTTTCGTGCGTCGCCCAGCGTTTGTGGCA 189557 29 100.0 32 ............................. GCGGCAAAAGCTGTCAGCGATTTTTTCAGTGA 189618 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 189679 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 189740 29 96.6 32 A............................ CCCGCATTTCTCGGTGATCGACTTTGTAACCT 189801 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 189862 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 189923 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 189984 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 190045 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 190106 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 190167 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 190228 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 190289 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 190350 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 190411 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 190472 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 190533 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 190594 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 190655 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 190716 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 190777 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 190838 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 190899 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 190960 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191021 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 191082 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 191143 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 191204 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 191265 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 191326 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 191387 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 191448 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 191509 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATTCGCACTGCCT 191570 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 191631 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 191692 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 191753 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 191814 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 191875 29 93.1 0 A...........T................ | A [191901] ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //