Array 1 76641-74475 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSKX01000018.1 Actinomyces naeslundii strain WE6B-3 WE6B-3_contig018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 76640 29 100.0 32 ............................. CGTCTCAGTGCGTATGTGTATGTGCTTCGCCC 76579 29 96.6 32 ............................C CAACACCAGCCAGGCCCAACACGCCCACCGCC 76518 29 96.6 32 ............................C TACACAGAGGAACGCCCATAGACGGCAGACAC 76457 29 96.6 33 ............................C ACCCATGTGATCCACACCATCGAACACACGTAC 76395 29 100.0 32 ............................. CGAGCCGCCGAGCCTAGCCTGAGCGAGCAGGC 76334 29 100.0 32 ............................. CACGGCGTCACCCCCATCCTCGCGCTCGAGTT 76273 29 100.0 32 ............................. TCGTGGCGTCGCTGTTCCATGGTGAGGGTGGT 76212 29 100.0 32 ............................. GATGACGTAGCGGCTGCCGGCGAGTCGGGCGG 76151 29 100.0 32 ............................. ACGTCGTCGACCCGGGTATCCCCCTCGTCGAC 76090 29 100.0 32 ............................. GCCGCGCTGGGGGCGAAGATGGAAACGGTCTC 76029 29 96.6 32 ............................C CACCGTGACGACCCACACGCCGCCGGGCACGA 75968 29 100.0 32 ............................. ACATGGCCGAATACCCTGTCTACGGCTACGCG 75907 29 100.0 32 ............................. GGGAGGCCACTTCCTCCGACCCGATGGCCCGC 75846 29 96.6 32 ............................T GCGCGCCCTGCGCCGCCGCCGCACCCCATCTT 75785 29 100.0 32 ............................. CTGATTCCGGTTCTCCGACACCAGGCGCACCC 75724 29 96.6 32 ............................T CTGGGAGGCCATGGCCCACGCCATCGAGGAGA 75663 29 100.0 32 ............................. CCGAGTGCACACTCCCCCTAGAACGAGAACCA 75602 29 96.6 32 ............................T AAACCCAACCCACCACACACACGAAAGGAAGG 75541 29 96.6 32 ............................C ATGGGGTGGGCCGAGCCGCCCTCCTCCCCCGC 75480 29 96.6 32 ............................C GGATACCCGTGGCTCTGTGACGAGGGCGGCTG 75419 29 96.6 32 ............................C GTCATCATAATCTCCAAACCTTTCGCAGTACT 75358 29 96.6 32 ............................C GCGTTCACGATGACGTCGTCCGAGGCGATGTA 75297 29 100.0 32 ............................. GGTCCCGAGCCCGTCGACAAGGTCCTGCTGAC 75236 29 100.0 32 ............................. TCGGCCACCGTAGCCCTGAAGTTCACCGTGTT 75175 29 100.0 32 ............................. GTCCTCCAGGTAGTAGGTCCACCCGCCTGCGT 75114 29 96.6 32 ............................C AGGTCCCGCGAGCTCATCCTGATACCGACCTC 75053 29 100.0 32 ............................. TCGAACTCGGGGCGGGGAGCCCGAGGACTGTT 74992 29 96.6 32 ............................C AACTCAACGAAGGAGGCCAGCCGTGATTGAAA 74931 29 96.6 33 ............................C CGCCGATAATGCCCATGTACTTGAAGTGCTCAT 74869 29 96.6 32 ............................C GAGTATAACTTCCTGAACACTGGTATGCGTGG 74808 29 100.0 32 ............................. GACCTCGGCCCTGCGCCGGCCGACGCGCGCGT 74747 29 96.6 32 ............................C CCGGCGACGTGACCGCGAGACCCATCGTCGGG 74686 29 100.0 32 ............................. CGGCAGGATGGCGAGACCGAGGCGGCCTATGC 74625 29 96.6 32 ............................C AAGCCCGCCGCGGATACGTTACTCATGCAGAT 74564 29 96.6 32 ....................A........ ACGTACCGCGTCACGGACGAAGTGCGCGCCCT 74503 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 36 29 98.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCG # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTACGCCGGAGAGGACGCAGGAGGGTGGTAGTCCTGATTCTTTCTGCTGCCCCTGCCTCGTTGCGGGGCTCCATGACTCGCTGGTTGTTGGAGGTCTCTCCCGGGGTCTTCGTTGGGCATGTTTCAGCTCGAGTACGAGAGCAGCTGTGGGAGCTAGTGCGCGCATACATCGGGGAAGGTCGTGCGCTACTGATCTGGTCGGTGCGATCTGAGCAGCGGTTCGAGATCGCCTCTCTGGGGCACGAGCGTGAACCTGTCGATATCGAAGGGTGCCTCGTCATGCGCACCCCGTACCGACAGATCGAGGGATCGCAGGCGATTCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGGCGCTATCGGAGCTCTGCGGAGCGAGCACTAGGTCGGCAGTGAAGGCAAACGCGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAGGGATCCGCAAGT # Right flank : GAACAGCTGCACGAACGAGGGGTGCCAGGCGGGTAAACCCCGCGCGAGCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCGAGCGGGGATGATCCCTGCCTGAAGGGGGTTGACAGCCCCGGAATCATGTAAACCCCGCGCGAGCGGGGATGATCCCTTGGACTAGGCCGGCGGCGATCACGGGGCCACGTAAACCCCGCGCGAGCGGGGGTGATCCTGGATGTCAAGGGAGGCAGGCCGTAAGCGTTGAGTAAGCCCCGCGGGAGCTTGGACAATCTAGCGGACCTGGCTCGGACGACAGGTTCATGTATCTGGTGCGTCTGGTTCAGGATGAGCGCAAGGCCGCTGGCCTGCACGTGGGGGACCGGATCCGTCTGGAGCTGAGGGT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //