Array 1 5899-5401 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYA01000005.1 Listeria seeligeri strain Ls13-005 Listeria_seeligeri_Ls13_005_Contig05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5898 36 100.0 30 .................................... TAGTGGAAGGAGTATTTAGTACAACTGAAC 5832 36 100.0 30 .................................... CTTGGTTCGATGATTCAGTGCAATGGATAA 5766 36 100.0 30 .................................... GTTTTGTTCGCCGACTTACTCACACCTTTA 5700 36 100.0 30 .................................... TACCGCATATATTGAAGTATCTGGTGAACC 5634 36 100.0 30 .................................... AGCAAGTTCTTTTGTAGTCATGTCCCGTAA 5568 36 100.0 30 .................................... TATGGATCATTGTGAAATTAGGTGTATCAA 5502 36 100.0 30 .................................... AGATATAAGCCTCAATTAAAAGTGGCAATG 5436 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : AGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTCTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGCTTAAAACAAAACACCGAAGCAATTATCAATAACACGATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCGATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1224705-1230802 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYA01000001.1 Listeria seeligeri strain Ls13-005 Listeria_seeligeri_Ls13_005_Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1224705 36 100.0 30 .................................... CCTCCGTCTACTTGGTCGCTAGCATAGACG 1224771 36 100.0 30 .................................... GTACCGAAACAGGTGAATTAGTTGATGTTC 1224837 36 100.0 30 .................................... TAATCCTAGCATCCTGCGTTTTTGTAAATT 1224903 36 100.0 29 .................................... ATACTTATGCAATGACAGCGTGGAGATCG 1224968 36 100.0 29 .................................... TCATCTTCACTTCTCACTAATAACATTTT 1225033 36 100.0 30 .................................... CCGGCTCTAAAAAGACTACATGCACGTCAG 1225099 36 100.0 30 .................................... AATTCGTCTAGCATTTCACCAGCAGTAAAA 1225165 36 100.0 30 .................................... ATGACAAAGAAGCTCTCTGCATCATCCCAC 1225231 36 100.0 30 .................................... AACCGGATTAATATAATTACTCACCTTATG 1225297 36 100.0 30 .................................... ATGGTCGCCATGTTCCTGCTGCTGTTATTG 1225363 36 100.0 30 .................................... AAAGGCATTGATTTAAATTCACAAATAAAA 1225429 36 100.0 30 .................................... AGTTCTTTGACAAACGCATCTAATTTACTT 1225495 36 100.0 29 .................................... TCCGCTAGGCGCCTTTCCATTCGTTTTAT 1225560 36 100.0 30 .................................... CTCGTGTCGTTGGGTCATTTACTACACCTA 1225626 36 100.0 30 .................................... AAGCTTGAAAAAGCTTGTATAACCGTCCAA 1225692 36 100.0 30 .................................... AGCTCATATACATACTTTTCCCCATCTCCA 1225758 36 100.0 30 .................................... TAATCCTGCTCCGTAAAGTGTGATAGGATA 1225824 36 100.0 30 .................................... TAAACTGAATATACAAATGTATCATCTGAA 1225890 36 100.0 30 .................................... AGCTCTGTTCTTTCAGCGTCGGACATTCTT 1225956 36 100.0 29 .................................... AAAAGTAATACTTTTTTCTTCTTCAAAAA 1226021 36 100.0 30 .................................... CTAAATCATTTAATTTTATAATAGTTAAAG 1226087 36 100.0 30 .................................... TTAAGGACAAGGTATCAATATCAAAACTAA 1226153 36 100.0 30 .................................... CGTACTTGCTCAGCTAAAGCGTTTTTAAAA 1226219 36 100.0 30 .................................... ACGATTATTTCCTCACCATGTTTGTGTAAG 1226285 36 100.0 30 .................................... ACTTTAATGGCGTACGACTTTTAAATTGTC 1226351 36 100.0 29 .................................... AACCATATTCGTTGAGATGAATTATTTTA 1226416 36 100.0 30 .................................... ATCTCCTAACGTCACAATCATATTCTTATT 1226482 36 100.0 30 .................................... GGAGCATTGGTGATACAGTCAAATGTAATT 1226548 36 100.0 30 .................................... AAAATAGCCGAATCCAGTACGTACTTTTGA 1226614 36 100.0 29 .................................... AGTGAAGGCTATGCAAGAGTAGCTTATGT 1226679 36 100.0 30 .................................... ATCCGAGGGCAGTATTATCATTGAAGGCAA 1226745 36 100.0 30 .................................... ATATCAAGTACTTCCTTTTCATATAATACA 1226811 36 100.0 30 .................................... ACAGCAAATCACCATATACTCGACTGCTCT 1226877 36 100.0 30 .................................... ATCGGTAAATCTAGCGTAGCGGCAACCATG 1226943 36 100.0 30 .................................... CTGATGCAATCGACACTTTCAAAGACGAGG 1227009 36 100.0 30 .................................... CTAGTTACCTCTGCTATTGCGTTAGCCATC 1227075 36 100.0 29 .................................... GTCGCGATGAACAAGGGTTCTTTTTTTAT 1227140 36 100.0 30 .................................... CAAAAGCTTTAATGTTACTAACAAAGACGT 1227206 36 100.0 30 .................................... ACGCCAGCTGGTGTGCCTGTTGCGACTTTC 1227272 36 100.0 30 .................................... ATCTTTGTCCAACGCATTGAATGAGTCAAC 1227338 36 100.0 30 .................................... CTTTTTCTTCAAATATTATTAACAACTTTA 1227404 36 100.0 30 .................................... AAGTTCTTGCCGAATGAAATTACTGTTAAT 1227470 36 100.0 30 .................................... CCCAACGATTATGGCTTTATATGTGATTAA 1227536 36 100.0 30 .................................... CTGAAAATGTATTATGCTGTTCTTTGATAA 1227602 36 100.0 30 .................................... ATGGATAGTAGTGCCTCACCTAATGTGCTA 1227668 36 100.0 29 .................................... TAGCAAAGATACAGCAAAAAATGTAAATT 1227733 36 100.0 30 .................................... TGCCCAATCTCCTCTGCCAATGTGCAACGC 1227799 36 100.0 30 .................................... GTAAATCTTTGAAGTTTAAAAATTCTACAA 1227865 36 100.0 30 .................................... TGTGTTTCCCACATACAGAGTAGACAAACG 1227931 36 100.0 30 .................................... CTCACAGTTTTAGTAAGCTCTAACTTACTA 1227997 36 100.0 30 .................................... GACTCCTTTTAATGTTTCGTAGAGCTTTAT 1228063 36 100.0 30 .................................... CTATAAAGGAGAATTTTACATTACTGACAT 1228129 36 100.0 30 .................................... ACAAATGTAGGGTTGTTATCGACAGTAACA 1228195 36 100.0 30 .................................... ACTGTGCCAATCCCATCCACCTCAAATTTT 1228261 36 100.0 30 .................................... TTGATAAAAGTAACATCACGAGCGAAGCAA 1228327 36 100.0 30 .................................... AGGCATTGTAGTTCAATTCCCGGGATTTGA 1228393 36 100.0 30 .................................... ATAATTTACGCACGGCAGAACGTGTTTTGA 1228459 36 100.0 30 .................................... ACGAGCATGGGCTTGCATACGATTTTGAAG 1228525 36 100.0 30 .................................... TGTTCTGCTGAATCATATACCGCTAAGGAA 1228591 36 100.0 30 .................................... ACTGGAACCGTCACAATGAATGATGATGGT 1228657 36 100.0 29 .................................... TGAAATGTCCGCATAATATACTTTTTCGT 1228722 36 100.0 29 .................................... TGCTTTCGCGTCTTCTTCTGTCGCTTTGT 1228787 36 100.0 32 .................................... AAAATCTATAACCAGCAATGAAGTAAAAGATA 1228855 36 100.0 30 .................................... AAAGGTCTTACCATTTAGCATAGCTAGTTG 1228921 36 100.0 30 .................................... ACCTTACTTGGAAATAGAAGCGGAAAAATT 1228987 36 100.0 30 .................................... GTTCAGACCCGTATATTTATTATGAACAAG 1229053 36 100.0 30 .................................... TACTCTCTTGCCTTCTCATTCATCTGTGCT 1229119 36 100.0 30 .................................... CCGCCCCATAGAGAATCCCAGCCACTCTTT 1229185 36 100.0 30 .................................... GAGGGAGAAGTTAGAAGCTAATGTTTTAAG 1229251 36 100.0 30 .................................... TGCGGGCTACATTGATGTAGAACAGGTAAA 1229317 36 100.0 30 .................................... ATCGTGGGATATTTGATCATCAGTCAATGA 1229383 36 100.0 30 .................................... TAGCGTTTTCTTCACTATAATCCTTAATAG 1229449 36 100.0 30 .................................... AGAATTATCAGAACTAATTACATCCGTATC 1229515 36 100.0 30 .................................... AAGTAAGTGGTTCCATTGATAATACGTTAG 1229581 36 100.0 30 .................................... TAGTCTTCCAATCTCTTTCGAGTTCTTCAA 1229647 36 100.0 30 .................................... ATCCATGAGTAAGGGTTGCGAGGAGGGTTA 1229713 36 100.0 30 .................................... TCTTACTAAAGTCAACACTTTGTACTAAGT 1229779 36 100.0 29 .................................... AAGATAATTCAAATTTTGCCTTGACATTC 1229844 36 100.0 30 .................................... TCATCGCTTTAACTGCTTCAATCACTTCTG 1229910 36 100.0 30 .................................... GTTACGTTCACCATGTTGTTTTCCCCTGTT 1229976 36 100.0 29 .................................... TTAGCTGAATCATTTAGTTCCCTCCTTAA 1230041 36 100.0 30 .................................... CACTAAATGAATTAGTATATTTGTAATCCC 1230107 36 100.0 30 .................................... CGGTGGCGGGCGAGGCAATTAACAAAAAAC 1230173 36 100.0 30 .................................... TCCATTTGGATAGTCGTTTCCAATCCGGTT 1230239 36 100.0 31 .................................... ATTAGCTTTTCTTCGCCATTTATACGAGTGT 1230306 36 100.0 30 .................................... AATGTAAGTGCAACGTTGCAATAAAATCAA 1230372 36 100.0 30 .................................... TCCATGGTTCATTCCTCCTAATTTCCAATC 1230438 36 100.0 30 .................................... TTCTCAATCTTCTTAATGATTTGCTTAGAT 1230504 36 100.0 30 .................................... AAGACGCAGGATATAGCGATTTAAAACAAG 1230570 36 100.0 30 .................................... CTCACGGTTTTAGTAAGCTCTAACTTACTA 1230636 36 100.0 30 .................................... TAAAGCTTTGAAGAAGATATGTAATACAAT 1230702 36 100.0 29 .................................... GCAAATATTGAATAGCGGATGTCGCTTCA 1230767 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 93 36 100.0 30 ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Left flank : TTTTTGTTAGATTAAAATGAAAACATGATTAAATATTCCCATTTTTCCGTTTTCTATTTTTCCAGTTAGCTAATTTTGAAAAAATATTATATCTGACTCAATTACTACGTTCATTATAGTTATAGAGCCCCCCCTCTTGCAAGCGGTTACAAGTATTTCGAAAACGGTTTTCGCTGGACGAAAAAAATGGGGGGTGGGGGTGGAAGTAATAAAAAGAAGGGGAATTGAATGGAAATATCCCTAGACATGGTTGTTTAATTTAGGGGTGCTCTTTATTAATTCATTTTTGGAGCAGATATTTTGGTTGTTTAGGCAGCTTGCAATTGTATTTTAGTTCCTCAGCATCAAACCACATTTTTCTAGTAAATCTCTTGCAGGTCTTTGTTACTTTCCGCTTCCATCTTTCTTAAGGAAGCAAATGTTGATGGTTTCATCTCATCATTAAATAAGTATACATTTACCTATTTTCTTCAGTCGCTTAGCATTTTTCATCTATTAAA # Right flank : TGTCTTTTCCATTATACCTCAACCTAAATCAACCTATCAAGGTAAACAATAATATTTGCAGGAATTCCTTTGTAGTCAACGATAATTCGCCATCCATTATAAATGAAAATAAAATAAACTAATACAAATACAACTAAGTTATCCACAGCTTCTAACTTCAATTCGACCGTTTTCCCACCATAGTTATCCACAGCTAACATAGACCAATTTATCGCTTTTATCCAATCCGATTCTTCTACGATTAAAGGTATCTTTTCAATAATTTGTTCTTTTTTAACCATAATTTGTAATTCATTAGCAATATCACCAAAATAAAAATGGTTAATTGCACCATCCATCCAAATATGCTCAGAAATGATAAATACATTGATTCCTCTTGTTAACATTTTTTCAACATGTGATTGAAATTTCTTTATTCCCTCCTCTGAAATTATAGTTTTTTCTGGCATTTCTATAAAAAATAAAACTTGTTTATTAAATAATTCCTTTGTATACATCTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCCTAATACCAAAACTTGAGAGAGTACCAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1255019-1254603 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYA01000001.1 Listeria seeligeri strain Ls13-005 Listeria_seeligeri_Ls13_005_Contig01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================== ================== 1255018 29 100.0 35 ............................. ATCGTATTCTTAACTGATTTAAAGGAGGAAATAAA 1254954 29 100.0 36 ............................. CACGGTAAACAACCTTTAATATTTCAACTGTGTCAC 1254889 29 100.0 35 ............................. GTTTCTAAGAATTTTATTAACGTATGCATAATTAC 1254825 29 100.0 35 ............................. TTTCTTGAACGGTTGCTAATTTCACCTCCAGCATA 1254761 29 96.6 36 ..................T.......... AGTTACTCCTAGGTGGGGAACGAGTGGAAATCAAAC 1254696 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 1254631 29 96.6 0 ............C................ | ========== ====== ====== ====== ============================= ==================================== ================== 7 29 99.0 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCATTCGGTTATGGCCGGAAGCGCAACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAATATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGGATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGCATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTAAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGCGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //