Array 1 22961-23355 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLX01000020.1 Levilactobacillus suantsaiihabitans strain BCRC 81129 Scaffold20_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22961 29 96.6 32 ............................T CGTGATAGTTCCATGAATGTCATTGTTTGTAC 23022 29 100.0 32 ............................. GCGTGATAAAAGACAAGGTAAAGAAACGAGCC 23083 29 100.0 32 ............................. CTCTGGGAACCATTTAACGCCATGGTCTTTAA 23144 29 100.0 32 ............................. AGCATCGACTTTGCCGTCAAGGTCGCCGATGA 23205 29 100.0 32 ............................. GCCGAAGCTCCCGCCTTCTTCGATGGATTGCG 23266 29 96.6 32 .........................C... AAATACTCCAGTATAGAATGGTCGGGCTTTCA 23327 29 89.7 0 ............A..........AT.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.6 32 GTATTCCCCACAGGTGTGGGGGTGATCCC # Left flank : AAGATTAAACGTGTACTTGCGGCAAATTGTGAATGATCTGTTGAAGGCGGGAGCGCTGGATGACCAGACGCCACGCTACTCCAGCATCCCGGGACGAAGAGTTGGGAACTTCAAGTTCGTCATGTTGAATCAGCAGTTCCAAGATCTAGGCGCTCAGGAGGACTTGCCGGTGTTAGACCGCTTATTAATTGGCGGTCGACTACTGTTGCAACGTATTTCTTTGTCGCCCCAGCGTTGGTACGGCCTAGCCTTCAGCGATGTCGTCGAGGAACGGGTACCACTGTTCATCGGCCAGCATCCGGATCGGAGTTTGCGGCAGCGGAAATAAGGAAGGCCAGTTGGAATTTGATTTGGAATTCCAACTGGCCTTTTTGTTACGGCTAAAATGCAGCTAAAAAATGAATTGCTAAAGCTGATTTGCTAGTGTATGCTAAAACCAAGTTAAATGAAAAACGAGTTTTTTCATTTTCACAATCCCGGTGTGACGGCGTTTGGTAAGT # Right flank : CAAGCTGCCGCCACATCTCTCCAAAAACTAAGATGCATAAGAAAAGACCCACCAGCCAAATCAAGGCCAGGTGGGTCTTTTCCTATATCTCTAAACTATCCCCACAAAAATGTTTCCATATCCTGTACCACTTCAGGGTTCCGCCGCGGTAGGGCGCCGTGGGCGGCGTCTTGACCGGTGAGCTCGATTTCCTTGAAGGATTTGGCCCGATTGGCAAGGAGGAACTTAAGCGAGCGGGCCGAGGCGACGGAAATGGTGCCGTCCGTGTTGGCACCGTCGCCCAGGTCGCCGTAGATACTGAGGACCTGGAGCTGATTATTCGGAATATTTCGTCGGTGATCGACCAATTGGCGGAAGGTCGGTGAGAAGTGGCTTGGCCGTCCGTTAGCCGCGTTGGTGGTGTGGACTGACCAGGGGTTCATGACAATATTACCCAGCATGGGTGGGGCGATTGCCACGTACTTCTGTAGTTGCGGCAGACGCTTGCGCTGACCGAAGAG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51781-52357 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLX01000006.1 Levilactobacillus suantsaiihabitans strain BCRC 81129 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51781 28 100.0 33 ............................ CGAATTAAGGATTTGGAGGTAGAAATCGATGAT 51842 28 100.0 33 ............................ CTGATATCCAGTACCGTTAGCTTTGGCATCAGC 51903 28 100.0 33 ............................ CAAGTCAAAGCTGATAACGAATTGCTTCGTAAA 51964 28 100.0 33 ............................ CGGGTCTGCGACCAGCTGTTCTTGATTTGCTTG 52025 28 100.0 33 ............................ TAAATCAGCCACTAAGAAACAGATTGTCGACGG 52086 28 96.4 33 ..A......................... TGCTAACGGTCGTACTTGTCAGAGGGTACGGCC 52147 28 96.4 33 ..A......................... TGTACAGAGGCTGAGCAATATCAAGCACCTTGG 52208 28 96.4 33 ..A......................... TATAATCCGGCGGCTTTATCGTCAATCATGTTT 52269 28 96.4 33 ..A......................... CAAGGTTGATGAGGAAGTTAAGTCTTCCTCCCT 52330 28 78.6 0 ..A.........A.C.....A..A.G.. | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.4 33 GTGTTCCCCACAGGTGTGGGGGTGATCC # Left flank : CATCTTGCCATACGAAGACTGCTGCACCATCTTCACGCCACCAGCACCCAAGACGCATCCGAGCTTAGAAAAGTCCCGGAAGTACGAAGGGTACATCGACGTGGAAGGTTTGATGAAAGAGGCCTTGGACGGCATCACCATCACGGAGATCCGGCCCGGGGACAACTACCTCAACCAAAATGAGGATGTCTTTGCTGAATTGCTGTAGGCAATAAGCGTGGCTCCAAGGGCGGTTAATCGGTGAGCATTAAGGCTATTGCGCGAACAATTCTGGCTTGGGATGGTTCGCGTAGTCGGCCTAAGCGGAACCGGTTGCTTTGGAGACACGTGTCGACTAATTAGCGTTGCTGAACAAGGGTCTGGGATTTTTCCCAGGCCTTTTTCTTGTAGAGTTTTAGTTGAGAACTTAGCGGATTTAGGCTATGCTGGTAAAAAACAAAGTTAAATGAATTTCGGGTTTTCGCGAAAATGAAATGCCGGTCTGACGGGATTTGTTTAGT # Right flank : CACCAGAGTTTTTCACAATTTTATGGCAAAATGCTTGTCATTACCCCTGGAGTTGCGCGATAATTAAAGCAATTAGTCGGTGAGAGCCGATAAATAACTGAAGGGGTTGATCTGCGTGGAAGTCACACGACTCGGCGATACATTCTCCTTATCTGGTACGTTGCCAGAAGTAGGGGATCAGTTACCAAAGTTTAAGGTATTCGATCAGGAAAATAAGAAGGTCAAGACGGCTAACTTGATTGGCAAAGTGACCTTGATTAGCGTGGTTCCGGACCTGGATACACCAGTATGTACCATTCAAACGCGAAAGTTCACCCAGCAGGCGGACCACTATCCAGATGCGCGGTTTGCGACGATCTCGAACAACTCGATTGCGGAACAAACTGGCTGGTGCGCGGCTCAAGGCGTGGAAAACGTTGATTTGTTGTCAGACGAAGAATTGTCGTTTGGCTACGAAATGGGGCTGTACGTCCCGAACTTGGGTAATTTGGCCCGGTCGA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGGTGATCC # Alternate repeat : GTATTCCCCACAGGTGTGGGGGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 70400-70609 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLX01000006.1 Levilactobacillus suantsaiihabitans strain BCRC 81129 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 70400 28 100.0 33 ............................ CGATGAAGGCATGAGTAAAGAATTTTTGGATTA 70461 28 100.0 33 ............................ TAAGTAGGCCACATGGGTGTGGCGGCATGATTG 70522 28 96.4 33 ..............C............. CTATGTCAAGCTGATTGAAGATGCGCTCACGGG 70583 27 78.6 0 .........G.......-...CA...TA | ========== ====== ====== ====== ============================ ================================= ================== 4 28 93.8 33 GTGTTCCCCACAGGTGTGGGGGTGATCC # Left flank : TCTTGGATGGCCAAATCGCTCGGCGCAACCACTTGGTCACCAACTTCGGTAAATTTGCCGACCCGCTGGCAGATAAGATGATCGTCATGACGGCGTTCATCATCCTGGTATCAATGGGCGCCGTGCCAGCTTGGGCAGTCGCCATCATTGTCTGCCGGGAGCTGGCCGTGACCGGCTTGCGGTTGATCGTCGTAGAAACCGGGGGCAAGGTCTTAGCCGCCGCCTGGCCAGGCAAAATCAAGACGACAACTCAGATGGTCGGGATCATCTTATTACTACTGAACAACATTGGCTTTGGCACCATCAACATCCCAATGGCTCTAATCTTCTTCTACATCTGCCTGTTCTTCACCATCTACTCGGGCATCGACTACTTCGTGCAAAATCGCCAGGTGTTCGCGGAATCTTCTGCAGAGTAATTGGGTGCGTCCGATAAGCAAGTTAAAGGAAATCCGGGGTTGGACGAAATTGAAATGCCGGTTTGCCGGGATTTGTTTAGT # Right flank : AAAGGTAGCAGTCCCCAGCGGCTGTTGCCTTTTTTGTAAAATTTCTGGTTCCGTGAGGTAAGATTAGCCGAGTCAGTCAGTTTTGTGGTACGATTTCAGTACAAACGCTTTTCACGAACTAGGTGAAAATAAATTTCAAAAAAATAAAAAATTTACACGCGTTTTTACGGAGTTAACTTTAAGTCACCTCAGGAGGGGTCAGCATGCAAGCGGAAATTATTGCGGTCGGAACGGAAATTTTATTGGGGCAAATCGTTGATACCAATTCGGCGTTTATTGCCCAGGAACTCGCCCAAGCGGGGATTGAAGTGTACTACCATTCATTGGTGGGCGACAATGCTGACCGCCTGACTGCGGTGGTGAATCAGGCCCGTTCGCGCAGTGACCTGGTGATTATTAGCGGTGGACTGGGACCGACCAAGGATGACCTGACCAAGCAGACCGTTGCGCATTTGTTAGGTGTTAAATTAGTGGAGAATGCCCCGGCGATGGCCAAGATT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACGTGCGGGGGTGATCC with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8203-8057 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLX01000027.1 Levilactobacillus suantsaiihabitans strain BCRC 81129 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8202 29 96.6 32 ............................C CAGCGTGACGCCGTCGCGTTTGCGAAGCTACA 8141 29 100.0 27 ............................. GAAGTGCAAACGGGTACCATCAACAAA 8085 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 30 GTGTTCCCCACATGTGTGGGGGTGATCCT # Left flank : GTCAAGGATGCGATTCTTTCGATTGGTGCTGTCAAACGAGGGCCAGATGGGCAAATGGTACAGTCGTATCAATTGATTAAAGGGGCTCAAGAGATTCCGGCTGGTATAACGGCATTGACGGGAATTACCAGTGAGCAGCTGAATGAGAAAGGGGTTAGTCTGACGGATGGATTGCGAACTTTGCAAGCATTTGTCGGAGACATGCCCGTTGTCGGCTATAACCTGCGCTTTGACGAGGGCTTTTTGCGGGCCGCTTTTAAACAAGTTGGGCAGCCCAGCCTGTCAAATCGATTTATTGATTTGATGCCATTGGTCAAGAAGTCAAACAAATTTCTGGATAACTATCGGCTGGAAACTGTTCTAGCTGATTATGGCATTGAAAATACCAGTCCGCACCATGCCTTGTCAGATGCTCAAGCAACTTTTAGCCTGGCGAGCAAGTTAAAGGAAAAACAGCTTTTTTGAAAAATAGAATCCCGGTGTGACGGCGTTTCCTTAGT # Right flank : AGCGCCATTGTCATGAGTATGGTGGACAAGCAGGATAAGAGGCTTGGCTTTTTTGCGAATTAATAAGTTTTGATTGACTTTCAGTGATCTATACTGTAAAATCAGTCCTAATCCGTTGAATTGCTACAGTTGACGCGTCCAGAGAGGCCGCACTGAGCACGGAACCCAACGACGGATCTTGAGAGTCCATTTTAAACGCAAAGATTTACCTTTTAATCGCTTCCAGCGAGGAGCAAAATAATCTTGTTAACCTAAAATTCGACCGACAGGGCACTGGAGATTTTTCCAGTGCCTTTTTTTATGGCTCTGTCGGTGGGGTGTTAATGCTCTGGACGCATCTCCCCAGCATTTCTTTTACATTTGTGCAAAGATTCCCCCGTCAAGCGCGAAAGTTTGTTGACAAGTTTTCATTTTCTGGTAAACTACTAAACGGTAATCATTACTGTTTACATATTAAAGACGCAAAGAATAGTTGTAAAAAATTTTGAATGGGGATGACG # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18360-17811 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLX01000027.1 Levilactobacillus suantsaiihabitans strain BCRC 81129 Scaffold27_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================== ================== 18359 29 89.7 32 ..A.................A.......A CAATGCCACAACTAAGGCAGCGGACTATTCAG 18298 29 93.1 32 ..A.................A........ AACTGCCCCCATATCGTCAGACTTAACGCCCG 18237 29 100.0 32 ............................. CCTGTTTCTGCCATTTTTAAGCCACTTCTTTC 18176 29 93.1 32 ............T...............C ATTGGTGCCTTGGAAATTAATATTTCGTGTCC 18115 29 96.6 32 ..A.......................... GAACTTGTAGTTTCGGTGCAAAACGAAATCAA 18054 29 96.6 32 ............T................ GTTTGACTCAAGAAACCTCGAGTGCTATCCTA 17993 29 89.7 62 ......T...G................T. CAGTGTAAAGTTATTTCCACAGATAGCTCTCACGGGGATGTGGGTCATAGGTGAAGGCGCCA C [17967] 17901 29 86.2 32 ..A.......T.AA............... ATAACTTATGTTATAAAGGGCCCATGATAAAT 17840 29 86.2 0 ............A..........TT..A. | T [17819] ========== ====== ====== ====== ============================= ============================================================== ================== 9 29 92.4 36 GTGTTCCCCACAGGTGTGGGGGTGATCCT # Left flank : ACTCGGGCTACGCGTCCGTTTTGGGCGAGGCCCGCTTCCGGATGCGTCACGAATTTCACGTGCCCACCCAACCGACGCTGGCAATTGCCGATCAGTACTCACGACTGGGCGACTACCGTTTGGCAGACGGCGACATCGCCAATCAGCTCCGCAAGAGCCACATCCCGCTATTACTGATTCAGGGCGCCAATGACGAGACGGTGCCCGTCGAAAACCTGGACCTCTTGTACCAAGCCTCCGCGGGTCCCAAGCAAAAGTATCGCGACCCAGTAGCGGCACACATCGCCACGCGCGAGGAGGACCCGGACCGCTATGACCGATTGGTGGCTGATTTCTTGGCGCCTTATGTGCGGGGGTAGATTATGATATAGGTTTAATCTACTTTCTAGTAGTCTTGGGATCCTTACTGAGGATGTTTTGTTAGGGCATCAAAGAAGTAAGTTAAAGGAAAAATGGCTTTTGGGAAAAATAGAATCCCGGTGTGACGGCGTTTCTTTAGT # Right flank : AATTGTTTAGTAATATAACATATGTTATAATGATGTAGACATAAAATTAATTCTACATTTAAATAGTGATTCTATAAGGATTATTTTTGATGTTGATGGTATTGACGTGAGCCTCATTGACTTGTATCTTAGAAATATTAACAGGTCAGTTAGCGCTTTCAGGTGCTGATTAGAACCGTAATTAGGGGAAGGGTAGGCAAAGAAAATGGCAGTGGAAATATCAAAGCGTGCAGCAGCATTATGGGCCAAGAAGCGGTCCGAAGATGGTCAGCAAGCCTGGTTACCATTAATTGTGCATTTACTGGACACACAAAATGTTGCTAATTATTTGTTTAATCAGTGGTTAAGTCCAGGCCAGCGGCGATTGTTACAGGGAACGTTATCAGCGACGGAGAGTCAACGTCTGGTTAAACTAGTGGGCTTTTTTCATGATTTTGGAAAAATTTCAGCCGCCTTTCAAGCCAAGGAATCCTATAATCGGGACGAGTCACTAGACGAAT # Questionable array : NO Score: 3.80 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : GTATTCCCCACAGGTGTGGGAGTGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //