Array 1 173547-175222 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMKZ01000005.1 Escherichia coli strain MOD1-EC6811 MOD1-EC6811_5_length_299218_cov_35.7148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173547 29 100.0 32 ............................. GCATTGACGCTTTAAACGACGACGGACGCCAC 173608 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 173669 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 173730 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 173791 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 173852 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 173913 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 173974 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 174035 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 174096 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 174157 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 174218 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 174279 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 174340 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 174401 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 174462 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 174523 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 174584 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 174645 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 174706 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 174767 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 174828 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 174889 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 174950 29 100.0 32 ............................. CCTAGCCCGATTATCGGCATGAGCGATGCGGA 175011 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 175072 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 175133 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 175194 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 28 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190738-191499 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMKZ01000005.1 Escherichia coli strain MOD1-EC6811 MOD1-EC6811_5_length_299218_cov_35.7148, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 190738 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 190799 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 190860 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 190921 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 190982 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 191043 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 191104 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 191165 29 100.0 32 ............................. ACCTGGAGGCGAAAAAGGCGCTTCGACGTAAA 191226 29 100.0 33 ............................. GAGGCCTATATCTCTAACCGCATCGGGCTGCGC 191288 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 191349 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 191410 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 191471 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 13 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //