Array 1 684-432 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRU01000504.1 Candidatus Hakubanella thermoalkaliphilus strain S03 HKBW3S03_000000000504, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ====================================================== ================== 683 24 100.0 54 ........................ AGCATATTGAGGATGATCGTCATGAGCAAGACCTAGAAGACATGAGAAAGGAGA 605 24 100.0 48 ........................ GTTATTCGAGAGACGTTATAGAGAGTGGGCACTGAGTGAGAAAGGAGA 533 24 95.8 54 .T...................... TCTGGATTCCAGAGCGGGTGATAGAGGTCGCAAACCGAACCGTGAGAAAGGCTA 455 24 70.8 0 .A.G.G.....C..A......G.T | ========== ====== ====== ====== ======================== ====================================================== ================== 4 24 91.7 52 CCGATACCTAAGAGGGATTGAAAC # Left flank : | # Right flank : TCTTCTAAAGGACGGTTGGAATGATTAATGATTTTATAGTGATTATCTTCTTCCTTGGTCTTTTGCTGAATCTAGTAATGAGGGGATATATTTATCCTTATTTCGCTGTTCTTGCTTTACTTTTACTTATCTCTTTCAGAGTAACAGCAAGGTTACTGGGCGGAGGCTTGGGTCACCTTATCCGCGTCTCTTTTACCATCGGCTTACCTCTTCTTTCCCTGGCTATCTTGGCAATCAGATACGGCCAGGGTGACTTAAGACAAACATGGCTGGTACTTGGTTTGTTAACCGCCTTATTTTTGAGCATTTTAGGAGTTTACGTTATGATCTGGGGCGGATTTTCTTCTCCTCATGGCATCCTTTGGAACTTTCCTGCACTGCTCAAGCATGGAGTGAGCCGCATCGTAGAGCCCGGCATTAAAAAGTTCAAGG # Questionable array : NO Score: 7.84 # Score Detail : 1:0, 2:3, 3:3, 4:0.59, 5:0, 6:0.25, 7:-0.60, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA // Array 1 495-1133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRU01000157.1 Candidatus Hakubanella thermoalkaliphilus strain S03 HKBW3S03_000000000157, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 495 36 100.0 40 .................................... CTCTCAAGCTGCTCCATTACCGCTAACAGCTCTTCACACA 571 36 100.0 38 .................................... CTCGTTTCACGAACTCCGGGAAACTATTTTATTATTTG 645 36 100.0 40 .................................... CTTACACTTGGGACAGATGCGGACTTCTTCTTGGTGTGTG 721 36 100.0 39 .................................... GGAGGCTAACCATGCCTAATAGCTATATGGGTCAAACCA 796 36 100.0 41 .................................... AGTGCGAAAGAAGGGTTGTAAGCGTAACGGGTTCGAGCCCA 873 36 100.0 43 .................................... AGTTGTTGTAGGCAAACAGCTTCCCTACGACAGGGCGGACGGA 952 36 100.0 36 .................................... TGGTTATTCATGGAGTACAGCCTCCCGTCATACTCA 1024 36 100.0 38 .................................... CGGATGAGCGCCTCCCCCAGCGGGTCTTTTAGATTGGG 1098 36 97.2 0 ...........................A........ | ========== ====== ====== ====== ==================================== =========================================== ================== 9 36 99.7 40 TGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Left flank : GCTCGAGTCTTTATTAACGTTGAGGTGACCAGGGATATAGGATGAGGCAAGAATCTTGATATTAGAAAGGAAGGTAGTAAATTAAAGATGCCAGAACTAATCAAAGATGCAAAGGAGGTTTATGAGAATTTGATGGTTGGCTTTGGTTGGGTTGGAATAGAAAGAATAAAGGTTCTTCTCCAAAAATAGTGGGTAAGAACCAGAATAGATGCGGACAACAATCTGGAGTTCCTTTGACACATAAAAGAATATATGCAAACTTTCTGAATTTTATCTGTATATTTCTCGTCGCCTTGCGGGCTTCTTGCCAATTTACAAAACACCTGGTCAACGCGGTAGATGCCCGCAAGATGATAATGCCTGATAGGAGTACATTTGGCAGTACAGAGAGGGGCAAAAACCCGATGTTGTGTCACATAAGTTACAATATTTCAGGCACATGCCCGAAAATAATGAATAAAAACCTATTCAAAGCCTATTATATTGGGCTGCTAT # Right flank : CTTATTCTGCTTTTCTTGCAGGACAAGATCTTTCAGCAAAAATAGCCCTCTGGAAAGATGCGGAAATTCATGAGAGAGAGGCAAAGAGGGGAAACAGGAAATTGGATGCCAAGACATGAATGATAGTAAATATCACAAAAACCTACAGAGGTTACCAAAATTTTGAGCGTGCCCAGCGAGGAGACGTTGACATGTTGGGAAGCTTTGTGGTCCGGGTGCGGCCAACGAAAAGCGTCTGTTATCAGTATTCCACAGGCAGACCTCTGCATGGTCTCTTTTTGCATCTTATAGAGAGAGTAAATCGTCCTCTGGCTCGGGAACTTCATGATGCTAAAGGGCAAAAACCATTTACCGTCTCTCCCCTGTTTGGGCATTTCCTGACCGAATCAGGGGCAAAAAGGGCGGTAGAGGAAGAGGAGTATTGGTTCCGATTTACAGCACTAACCGAAGAGTGTTGTGAGGCCTTGGTGAGGGTTTTCTATGGAGAGGCTATTGCCAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAGAAAGGAGACCGATACCTAAGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 581-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLRU01000571.1 Candidatus Hakubanella thermoalkaliphilus strain S03 HKBW3S03_000000000571, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 580 29 100.0 32 ............................. TATAGTTAATTGTTGATTAATATTAATTAAAA 519 29 100.0 33 ............................. TTTTTTTGGCAGCGTCCTAACCTTCAGCATTGT 457 29 100.0 32 ............................. CAACCAAGCCTCCGATTTTGCGGGCAAGTCAT 396 29 100.0 33 ............................. TTGTTTGGGTTCTTTTTGCGGGCTGGTTTTTTG 334 29 100.0 32 ............................. AAGGACTGGTTTGTGTCTGCGCAGTTCCAGTA 273 29 100.0 32 ............................. AAACGTTTCATAAAATGTAATAAAGATGGAAT 212 29 100.0 32 ............................. ATTTACGGGAATTTACTTTTTTGTTCATACTG 151 29 100.0 32 ............................. ACCAAGCAGCTCAGGGAGTTGAAATCGGAACT 90 29 100.0 32 ............................. GAAGCCCCCGGGAAGGGTTGGCTTTCCTATGC 29 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 10 29 100.0 32 GTCGTCCCCACGCGTGTGGGGGTGAACCG # Left flank : GAGGAACAGG # Right flank : G # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCACGCGTGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //