Array 1 40409-42816 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZF010000020.1 Vibrio cholerae O395 strain O395_III NODE_20_length_70382_cov_41.242387, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 40409 28 100.0 33 ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 40470 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 40531 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 40592 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 40653 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 40714 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 40775 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 40836 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 40897 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 40958 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 41019 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 41080 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 41141 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 41202 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 41263 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 41324 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 41385 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 41446 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 41507 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 41568 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 41629 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 41690 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 41751 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 41812 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 41873 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 41934 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 41995 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 42056 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 42117 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 42178 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 42239 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 42300 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 42361 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 42422 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 42483 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 42544 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 42605 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 42666 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 42727 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [42748] 42789 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.3 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //