Array 1 63310-63817 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGY010000022.1 Pseudomonas aeruginosa strain AIX06 ctg_AIX06_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63310 28 100.0 32 ............................ GCTGACAGCGATGTGGTCGGTGGCAAGAAAGC 63370 28 100.0 32 ............................ ATAGCCCGCGTCTTCCTCCGCGGTCCAGCCAT 63430 28 100.0 32 ............................ AGCGGTGCCCGTACATCTCGGTCATCTTCACC 63490 28 100.0 32 ............................ TGGAGAATTGGGTGCGCGCCGCGCCCCTTCGC 63550 28 100.0 32 ............................ TGCTCCGGCCATGCCTGCTCCGGGCCTTTCTG 63610 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 63670 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 63730 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 63790 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 96.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGGTGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGTTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGATGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 73270-72342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGY010000022.1 Pseudomonas aeruginosa strain AIX06 ctg_AIX06_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 73269 28 100.0 32 ............................ CAGGACGATCTACTACTACGGCATCCCGGATA 73209 28 100.0 32 ............................ ATCGTGCCGGATAGCAGCCGTTCGCCCCGCAC 73149 28 100.0 32 ............................ AAAGCCGCCCCTAGCCACGTCGAGAGACGTTG 73089 28 100.0 32 ............................ GCTAGCAGTTTTCGTTCTTCAGCTGCTGCACC 73029 28 100.0 32 ............................ TACTACATGGACCCTCCAGACGGTGGCAATGT 72969 28 100.0 32 ............................ TACGGCCTGCCGAACAAGCCATTCATCCTGCA 72909 28 100.0 32 ............................ AGTGGCAGCTTGGCGTGCTATGGCGTGGAGTT 72849 28 100.0 32 ............................ GCCAGGTGCGCGCGCGATGACGGTGAGCCTTC 72789 28 100.0 32 ............................ TTGACCCATCCCAGGATGTAGCGGACGACCGG 72729 28 100.0 32 ............................ ACGGAAATTCTCACCCAGGCCAGCAGGCGTAT 72669 28 100.0 32 ............................ GTTGGCATTGACGAACTCTACATCGACGCCGT 72609 28 100.0 32 ............................ ATGTTCTACAACGCCGAGGAGCGCAGCTGGTT 72549 28 100.0 32 ............................ GTGACGGTCACGCATGCGCAGCATTTTGAAGC 72489 28 100.0 32 ............................ GGTGTCCTCAACGCGAAGCTGACCGAACTGAA 72429 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 72369 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 168-1397 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABUGY010000016.1 Pseudomonas aeruginosa strain AIX06 ctg_AIX06_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168 28 100.0 32 ............................ TCGGCTTCCCTGGCGCGCTTCTCAGTGGCTTC 228 28 100.0 32 ............................ TGGAACGGGTGGTGGCGGCGATGGTGATGGCG 288 28 100.0 32 ............................ ATCGGCGGGGATCGATCGGGTCTCTTTTCGTG 348 28 100.0 33 ............................ GCGCAAGCGGGCAACATAGAACTTTCCACTGAT 409 28 100.0 32 ............................ TGCAGACGCTCAACAGCGCGAACCACTACACA 469 28 100.0 32 ............................ CCCTCGGAGTTCGAGGTATCAACGGTGATGCG 529 28 100.0 32 ............................ ATTGCGAAGGCACAGCGCGGCTTCTGCGATGT 589 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 649 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 709 28 100.0 33 ............................ TACGCCCTCGTTTGGGCCGCCATGGGCCTAGAA 770 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 830 28 100.0 32 ............................ TTCTTGAGTACGGCGACCAGTACGGTTTTTGG 890 28 100.0 32 ............................ GACGAGGAAACCCGAAACGCCGTCTCCAGCCT 950 28 100.0 32 ............................ AGTACCACGTCGACGCTGTGCATCTGCATCGT 1010 28 100.0 32 ............................ AGCATCACCCAAGCCTCATCGAGCGACAGCAT 1070 28 100.0 32 ............................ TGAACGGAATGCCTTTGCTCGGCAGCGAGGCT 1130 28 100.0 32 ............................ AACGGCGCCGGGGTGGTGGTGGCCTATCCGAT 1190 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 1250 28 100.0 32 ............................ TTGGTGACGTCGCTGACCACCCTGATCGGCGC 1310 28 100.0 32 ............................ ACTGCCCGCCGGTCGAGTGGTAGCGCATAAGG 1370 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGATGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //