Array 1 201968-202538 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGH010000019.1 Pectobacterium carotovorum strain A284-S2-N16 A284_(paired)_trimmed_(paired)_contig_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 201968 28 96.4 32 T........................... CATCGCCCCCAACGTGCTGCGCACCGCAGCCA TA,G [201971,201974] 202031 28 100.0 32 ............................ TGGTCGTAAATTTCAGTCGTTAACGAGCAACG 202091 28 100.0 32 ............................ GGTTTTGGTGTTCACCCCGCACAAGCCCGATT 202151 28 100.0 32 ............................ TGACCATATTCCTGACGCCACGAAAATGGTTA 202211 28 96.4 32 ...T........................ GTTATCGCATCATCCGGGTCTGTCGAGTACGT 202271 28 100.0 32 ............................ ATGTCCAATAATGTGGTGCGGGTCGTCTGAGC 202331 28 100.0 32 ............................ CGTACAACCCAGCCGGAACGCACCAGAAACCA 202391 28 100.0 32 ............................ TATTACCGCGATAGCGGACAGCGTGACACGCT 202451 28 96.4 32 ...........C................ GGCTCTGATATCGAGAATGTTTCGTCCAGCAG 202511 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 96.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATGCCCGCGCACCTGAAAGGCAGCCTGCTCGGAAACAGCCTGACGATCCCCATCACCAACGGACGCCTGAACATCGGCACCTGGCAGGGCATCTACCTGTGCGAACACCGCAACCACGGCGGCAGCCGCTCGCTGGTTGTCACGCTCAACGGGGAATAACGCCACGATATGCGTCGCGCCAGCGACGCATCCCGATAAGTATCTAGCTGCCTGAACGGCAGTGAACCCTCAGAAAGCTGATCTCAACCAAGGCGCATGTTTCTAAGCTGCTTATACGGCAGTGAACTTAATCATGCGGATCACTATTCGTGACCGTGTTTTCTAAGCTACCTATACGGCAGTGAACGCTTTTAGAGGGCGAAGTAACTGAGAGAGTGATTTCTAAGCTGCCTATGCGGCAGTGAATAAAAAGCATGTTCCCATGTAAGCACGCCATCATTTCTAAGCTGCCTATGCGGCAGTGAATCCTGCCGCTGGATATGGTCGCTATGCGGTACAG # Right flank : ACGACCTCAAGCGTTATTGTCTGGCTATTATCGAGGTAGCGCTGCGCCGAGTGCCCAATACGTTTACCCCTTAAATAACGCATATTGATGGCCTTCTTTCGTAACGTTTTTAAGTAATGAGTTTCTTTTAGAGGGAATGAAAAATTGTGAGGTCGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTTCCCTTACAGGGAAATAGTTCGTTGACTTAAGTCAAATTCAAGGGAGTGAGTGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGATCATCTTGATTTTAAAAAACAGCATGCAGATATTAACTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGACTCTTGGAAAACAGCAATATTTGGCTGTACCGATCCCAT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 209762-209434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIZGH010000019.1 Pectobacterium carotovorum strain A284-S2-N16 A284_(paired)_trimmed_(paired)_contig_19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 209761 28 100.0 32 ............................ ATGCGTCAGCAAATTACTGAACTGGGGTTTGA 209701 28 96.4 32 ............A............... GCATCAAATTCTATAATGCATCGAACGTGCTG 209641 28 92.9 32 ...........CA............... CACAGGGTGGCAGCGATGCTGATTACAAAAAA 209581 28 100.0 32 ............................ ATTCGTCAGCAGTCATAATTACCTCGCCGCAG 209521 28 92.9 32 ............A....T.......... TAGGACCAATTGACTCATAATCAATTGGTCGC 209461 28 71.4 0 ..G........AAC......TGA.C... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 92.3 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : ACATCCTGGCGTTCTGTCATAAAGTCAGCATCAGCGCGCTCTTCTTGCAAAAACGAATGCCAATTGGGTTTGACCGGACGCAGTATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGTGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGATGCACCTCCTCCTTAATACAGGAATTCAGCCAGCCACTTACCGTTTATTATTGCTGGCTAAAACATAAGCCAAGTATAAATATTAATCACTCGATTGTATATCCATAACATATGCAGATACCTGGCATAGGCCTATCGACGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTACGCATCGTCGTAACTCATTGATTTTTAATTTCGATTATCTACGCTGATAAAAAAGGGGTTTTCAGGAAAAATGGTTTATTTCCTTTTAAAATTAGGTAACTACCGTAAAATATGAAC # Right flank : ATAAAACGCCGCAAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCCGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTAATTGAAGTACGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGACCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCTCAGAACAAGAGCGT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //