Array 1 603-349 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLB01000002.1 Actinomyces naeslundii strain R8152 R8152_contig002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 602 37 100.0 34 ..................................... TATCGTAGGTTGATGCGTGCATTTAAATCTGGAA 531 37 100.0 37 ..................................... CGACACTGCTATCGGTGCTCTCCGCCCAGGAGAACAC 457 37 100.0 35 ..................................... TGGCCGTGCCTCAGCTGTCGAATTCCCGGTCGTAC 385 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 100.0 36 GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Left flank : CCTTGGGGATGCCGAAGCTCAGGAGCGGGTCGGGCTCGTAGGTTCCTGAGCGCAGGGATTCGGAGAGCTTGGTGAGGAAGTCATCGAGATGCTCGGCGAACTCCTTGGTCTTGCGCTGCAAGATGCCGTCGGAGGCGTCCTTGGCGAGGACCATACGCCAGCCTTCCTCCAGGCCCTCGGGGGAGCTGATGCGCTCGAACAGAGTGCCAGTGGCCGCCTCGGACGACGTAAAGCCCGCCGCGTGCTGGAGCGGGTGAATGTCCTCCCCGAGGTGCTGGCCCGGTTTCGCGCGATCGGAACGACGGCGACGACGGTGCGGGTGGGATGGGGGTGGTGGTGTCGTTGACGATGGTGGTGGCAATGGCGGGTCTAGACGCATCATTGCGGCCTTTCAAAGGTGGGAACGTGAACTGGTTCTGTACTCTCAGAATATCGTGCTGATGATGGCGAAATGCGGGACTCTGTGGTCTGTGGTGGCCCGGACATATTGCGATGTACAC # Right flank : CCCCTGCCTCTGGGAGGGGCGTCGTTGCGCCACTTCCGGGGGCAGGAGCGCCACCGGCTCCGCAAGCACCCCGCGGGACCGGCCAGCACCGCTCCAATTTAACCACCTTTCGGAGTCCTGACGCCAAGCGCCACCGACGCCCCTTCGGGAGCCTTCAGCTACCAACTTCTAACGACGTCAAGCCAAAAGATCGACGTTCCCAGCCGTGACTGTCGACACAGCCTGGTGTGGTGGTGGAGGAGTCGGGCCCGTGCGACATCAGGAGCGCTTCCTCCGCCGAGCCGCCTGGTCGCTCAGCTCGTTAAGGGGATGAGGGTGGACTGTAAGTCGGCTCTTCGCGTTTGAGGGT # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTCTGGTGCTGGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 16201-16963 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLB01000002.1 Actinomyces naeslundii strain R8152 R8152_contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 16201 37 100.0 36 ..................................... GCGACGGCGGGCACCTCGGGTATTCCGAAATACTGC 16274 37 100.0 36 ..................................... ATAAGGCGGTCACGCTCCTCGTAGATGGAGGCAAGC 16347 37 100.0 36 ..................................... TTGTAACCCGAGAATTCTAAGTGATCTATGATCTTC 16420 37 100.0 34 ..................................... CACAAGCCACCGTTGAGGCTGACTCCGATGCCGA 16491 37 100.0 36 ..................................... TCCAGTGACGGATAGGTGCACGACCTTATTCTGTCG 16564 37 100.0 36 ..................................... GATAATTGTCACAGCAAGACTCAGGAGCATATAGCA 16637 37 97.3 33 .............T....................... ATAGTCCCTTTTCTTGATAGTGATGGCATCAGC 16707 37 97.3 36 .............T....................... TCTCATCACGAGGACTGAAGAAGTACACAATGATGA 16780 37 97.3 35 .............T....................... CCCCTGAGTCTCAATGAACGGGTTGCCATCACCCC 16852 37 94.6 38 .......G.......A..................... AGCAAGTGTCATATCCTTTTTTTGTCTCTGACAACCTG 16927 37 91.9 0 .......G..................C....C..... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.0 36 GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Left flank : ATCGCCCTGGCGGTTCTGACCTTCATCGGCCTGCCCCTGAGCGTGTTCCTGGAGATCTGGTCCAATTGGGAGGCCGCTAAGGGCATTGCGGTCCGGCACCAGCACATCGGCGGCTGGGACGCAGGATGGGGATGGATTCTTGGCTTCGGTCTTATCGGGTCGGTCCTCATCGGCGGTGGGATCTGGTTGCTCGTCGACAAGCTGGGCAGCCGGGCGGCTCGGCGGGGGAAACATTCCTGACACCGAGTCCAGGGCCCGGTTCCACCTCCACCACAGCGGGTTGTGCCTGCAGTCACAGGTCGAAACGTCGATCTTTTGGCTTGGCGTCGTTGGAAGTTGGTAGCTGAAGGCGCCCGAAGGGCCGTCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAGGGGCGGTGCCGGCCGGCCCCGCAGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAATGACGCCACTCCCAGAGGCAGGA # Right flank : CACTTCCTGCCGGGCACTTTGTGCACCCCAGCCGAGGAAGACTGAAGTCCCACCCGTCCGACGACAGAAGCAGGACGTGTCGACAGTCATATGCGGGAACGTCGACCTTTTGGCTTGACTTCGTCGGAAGCTGGTAGTTGAAGGCGCCCGAGGGGGCATCGGTGGCGCTTGGCGTCAGGACGCCGAAAAGTGGTTAAATAAGGGCGGTGCCGGCAGGTCCCGCGGGGTGCTTGCGGAGCCGGTGTCGCTCCAGCCCCCGGAAGTGGCGCAACGACGCCACCCCCAGAGGCAGGAGCCAGAAAGCACCCCGCACCAGAAGGTGCATTAAGACACACACACTACAAATACTAAAGTCATTCCGAGCAAGCCAGAAAGCACCCCGCACCAGAAGGTGCATTAAGACCGGATTGCCTGGCTGGTCAGGCCGAGGACGGTGGTCAGAAAGCACCCAGCACCACAAGGCGCATTAAGACGAAGGTCATGCAAAGTGTGTCGTCTAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : GTCAGAAAGCACCTAGCACCAGAAGGTGCATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [14,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 153475-153870 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLB01000012.1 Actinomyces naeslundii strain R8152 R8152_contig012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 153475 37 100.0 33 ..................................... GCGAACTTCTAGAGCAATGCCGTCACAGTAGTC 153545 37 100.0 35 ..................................... TGTACTGGTCGATCATGTTGTAACTGGTCATTGTT 153617 37 100.0 37 ..................................... GTGACGCCTCGCTTCTCCAGGGCACCGCAGACGCCCC 153691 37 100.0 37 ..................................... TATGATGAATAAGACTACTGCAGCAATAGTATTTGCT 153765 37 97.3 32 ..........................C.......... GATCAGATCTCCCAGCCACTGAACGATGTCGT 153834 37 81.1 0 .......G...T.C............CA...CG.... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 96.4 35 GTCAGAAAGCACCTAGCACCAGAAGGTGCATTAAGAC # Left flank : CTAGGACGCGGCCCCAGGCGGCGTGAAGGCGGCGGGGTGTGGCCTCGACCGGGCCGGGCGCATCGAAGCGGACGAATACGGTGGCGGGCACTCGACGGGGCTCCTTTGCGGCGTGATGAGTGGCGGACATGGCCGTCTACCCCTTACTTCTGGCGACCCTACCGGAGGAGAGGCGGCCTGTACGGGGAGTTCGAGAGGTCGACGTTCTTCAGTATCGACGGCCAGGAGGAGGTGGAGAGGACGAGGCACAGCGGCGCGCCGGTCGAACCACGGAAGCATAGTGTGTCGACAGTCACGGCTGGGAACGTCGTTCTTTTGGCTTGACGTCGTTGGAAGTTGGTGGCTGGAGGTGTCCGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAGAAGTGGTTAAATTGGAGCGGTGCTGGCCGGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCGACGACGCCGCTCCCAGAGGCAGGG # Right flank : CACTCTCCTGTTGGTCGCATTGCACTCCCCAGCCGAGGGAGCCCGAAGTCTTGCCACACCGACAGCAGAAGCAGATTGCATCGACAGTCATAGGCCGGAACGTCGTTCTTTTGGCTTGATGTCGTTGGAAGTTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAGAAGTGGTTAAATAGGGGCGCTGCTGGCCAGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACACCCCTCCCAGAGGCAGGGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACAAAGCAAAGCGCCACTGTGAATCGCCAGCGCGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACAATCTCTTTCTATTGCCCCACGCCCATAGTCTGAGGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAAGACTTGTCCTGAGTCCACACATACAGGTGA # Questionable array : NO Score: 3.08 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTAGCACCAGAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 154164-154408 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLB01000012.1 Actinomyces naeslundii strain R8152 R8152_contig012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 154164 35 100.0 34 ................................... GACAAAGCAAAGCGCCACTGTGAATCGCCAGCGC 154233 35 100.0 37 ................................... GACAATCTCTTTCTATTGCCCCACGCCCATAGTCTGA 154305 35 100.0 34 ................................... GACTTGTCCTGAGTCCACACATACAGGTGAATCA 154374 35 88.6 0 ..C.........................CT...G. | ========== ====== ====== ====== =================================== ===================================== ================== 4 35 97.2 35 GGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAA # Left flank : GCTTCTCCAGGGCACCGCAGACGCCCCGTCAGAAAGCACCTAGCACCAGAAGGTGCATTAAGACTATGATGAATAAGACTACTGCAGCAATAGTATTTGCTGTCAGAAAGCACCTAGCACCAGAAGGCGCATTAAGACGATCAGATCTCCCAGCCACTGAACGATGTCGTGTCAGAAGGCATCCAGCACCAGAAGGCACATCGAGACACTCTCCTGTTGGTCGCATTGCACTCCCCAGCCGAGGGAGCCCGAAGTCTTGCCACACCGACAGCAGAAGCAGATTGCATCGACAGTCATAGGCCGGAACGTCGTTCTTTTGGCTTGATGTCGTTGGAAGTTGGTGGCTGAAGGTGCCTGAGGGGGCGTCGGTGGCGCTTGGCGTCAGGACGCCGAGAAGTGGTTAAATAGGGGCGCTGCTGGCCAGTCCCGCGGGGTGCTTGCGGAGCCGGTGGCGCTCCAGCCCCCGGAAGTGGCGCAACGACACCCCTCCCAGAGGCAGG # Right flank : CGGGACTTACAGGCTCTTCGTGTTTGAGGGTG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGAAAGCACCCAGCACCAGAAGGTGCATTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.90,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1058-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLB01000037.1 Actinomyces naeslundii strain R8152 R8152_contig037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1057 29 96.6 32 ............................T GACAGCCCTTGGCGGTGCCATTGGGCTCAACG 996 29 100.0 32 ............................. ATTCCCGTTATGGTTGACATTTCCTCGGAACG 935 29 96.6 32 ............................T GGGCGGGGGGTGTCATCCTCGGTGGCGGCACA 874 29 96.6 32 ............................G GAGGAGTCATGACCGACCCAATTCAGCAGCGC 813 29 100.0 32 ............................. CCCATGGCCCTCAAGACACGCAAGCCGACCGG 752 29 100.0 32 ............................. CACCCAACGGAGGCGTCATGACCGTCCTCCTC 691 29 100.0 32 ............................. GCGTTGTGCGATCGGCCCACTCGGTCGCCCCC 630 29 96.6 32 ............................G GCCGCGCTCCGACGTGTCCAGATATCCTCCAG 569 29 96.6 32 ............................G GCGGCCCGCGAGTGGGCAGCCGGCGTCCGCGC 508 29 100.0 32 ............................. GAGTGAACCGCGGCCGCATTATATGCTGGAGT 447 29 96.6 32 ............................G ATGGGGAGCGAGGTGAAGCCGGTAACGGAATC 386 29 100.0 33 ............................. TCCACCTTCATCTTGTCATAAATACACGATGTG 324 29 100.0 32 ............................. TGGATCGCACTGATCTCAGCGTTCGTCTCATC 263 29 100.0 32 ............................. CTTCTGACTCAGTTTGTTTACAAATACAACCC 202 29 96.6 32 ............................T CACCTTGTTTCGAGAGATCTCATATATCTTCG 141 29 100.0 32 ............................. AACATGCGAGCAACCGTTCAGGCGGTCCAGGG 80 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.6 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : GCAGCGTGCTGTGGCCGGTGGAGCGAATTACGCTGGAGAGGATGCAGGGGGATGGTAGTTCTAGTTCTGTCCGCCGCCCCTGCTTCACTGCGGGGTTCCATGACTCGCTGGCTGCTCGAGGTCTCTCCCGGGGTCTTCGTCGGGCATCTTTCAGCCCGAGTACGAGAACAGCTGTGGGAGTTGGTTCGCGCATACATCGGGGACGGTCGTGCACTGCTGATCTGGTCGGTGCGATCCGAGCAGCGGTTCGAGATCGCCTCTCTGGGACACGAGCGTGAACCGGTCGATATCGAAGGGTGCCTCGTCATGCGTACCCCGTACCGGCAGATCGAGGGATCGCAGGCGATCCCCGGCGCCGTCAAGCCTCCGAAGGAGTCCTGGTCGATCGCTGCGAGACGACGGCGCTATCGGAGCTCTGCGGAGCGGGCGCTAGGTCGGCAGTGAAGGTGAACGCGGTCTGGTAGTGTGGCTCGTCGTTGGGATTCCAAGGATCCGCAAGT # Right flank : CTCAGTCATCAGCGACAAGCGGTCGGGCATCTTGTAAACCCCGCGCGAGCGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 54-632 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSLB01000009.1 Actinomyces naeslundii strain R8152 R8152_contig009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 54 29 100.0 32 ............................. GTTCCTCGAGTAGGAGACAAGTAATGGCGACG 115 29 100.0 32 ............................. ATTATCAAGACAAAAGACACCAGTGGGGTGGA 176 29 96.6 32 ............................G TACAAGGGGACAGGAAATGTTGCTGAGGACGC 237 29 96.6 32 ............................T GTCCACGAGGCGCTGAATCTGAGCAACAACCG 298 29 96.6 33 ............................T GTAAACGTGTCCCTTCTTGATGACAGACCACTG 360 29 100.0 32 ............................. CCACGCAGGTGGCCCTCCCGATCCAGAACACC 421 29 100.0 32 ............................. GGCTCACCGGATTCGTCCTGGCCGGACAGTAT 482 29 96.6 32 ............................G GACTCACGAGAGGCAAGCACCTGACCAGAGTT 543 29 89.7 32 .......................CG...T GGACGTCAAGGGAGGCAGGCCGTAAGCGTTGA 604 29 75.9 0 ............G....TT...CA...TA | ========== ====== ====== ====== ============================= ================================= ================== 10 29 95.2 32 GTAAACCCCGCGCGAGCGGGGATGATCCC # Left flank : CGCGCGAGCGGGGATGATCCGCACAGCGGCGAGCAATATTGAAGTCATTATTGG # Right flank : AGCGGACCTGGCTCGGACGACAGGTTCATGTATCTGGTGCGCCTGGTTCAGGATGAGCGCAAGGCCGCGGGCCTGCACGTGGGGGACCGGATCCGTCTGGAGCTGAGGGTCCCGGAGGACAAGGGTGCCTGGACCGGTGCCCATCTGGACCTCATCAAGCGGGAGGTCGGCTGCGTGGACGCCTCCGTCATCGCCGCCCCCGGTGCCAAGGAGCCTATCGCCACGGTCGAGAAGGTCGTCGAGATGGCCACGGAGGTGGCCACGAAGACGAGCGAGGCCTGATCCAACACGCCCAGTCGATTACTTTACAAATACATCTGGTGTGATGCAGGATAAAGCCGTTGCTCGGCCACCAGGGTCTGGTCGGGCAATGGCGCGTTTCTGCTCCCCCAGGACCGCCTCTCTCATCTCCCTAGCCGGTACTTGTCAGGCCGCCGAGACGGTGGTCTGAGAGGCGTTACGCGTGACCTCAACCCTGGGTGGGGCTGCCGGCACCCTAA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAACCCCGCGCGAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //