Array 1 628378-629747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXU010000001.1 Micromonospora sp. C97 C97_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 628378 28 100.0 33 ............................ GGCTGAAGACCCGAAGCGGTCGTGGGAGAAGAT 628439 28 100.0 33 ............................ CCGCTCCGACGCACCCTGAACCGACCGGGAATC 628500 28 100.0 33 ............................ GAGGACGGTGGTCACCTCGGCCTGCGCGTCGAC 628561 28 100.0 33 ............................ CGTCGTCACGTTCTTCCTCGCGCTCGCCAAGGC 628622 28 100.0 33 ............................ GCCCGCCACCGTCCGCGACTGCGACGGCAAAAC 628683 28 100.0 33 ............................ CCTGGCATCGGTGCCGGCGTTCGCCCGCGTCTC 628744 28 100.0 33 ............................ GCTCGTCGACGCCGCCACCGACGGACCGTGGAC 628805 28 100.0 33 ............................ GATGAACCTCAACCAGGACGCCTCGGAGTTCTT 628866 28 100.0 33 ............................ CACAGACAGCCGCGCCGTCAACCCGGCCGGCGC 628927 28 100.0 33 ............................ CCGCCACACGGTCACCCGGTAAATGTCATACAG 628988 28 100.0 33 ............................ CTGCACCATCTCCATCTTGAGGCCGGCGCCGTC 629049 28 100.0 32 ............................ TCGGCGGTAGCTTCGTCGGCGTCGGGGTTGTC 629109 28 100.0 33 ............................ CGACACGGGCGGCTTACCCGGCGGGCGCATGCC 629170 28 100.0 33 ............................ CGCTCCCAACAGCAATAATCCACCCAGGACAAG 629231 28 100.0 33 ............................ CAGCAGCAGGCAGGCCAAGACAGAGCCAACACC 629292 28 100.0 33 ............................ GAGTCGCCGCACCTGCTCGTCTCCGGCGGCAGC 629353 28 100.0 33 ............................ CGGCCGTCATGCGAGCCCGGCACGACACGGCGA 629414 28 100.0 33 ............................ GCTCTCCTGCCGCCTCGCGGCGCTCGCTCACCT 629475 28 96.4 34 .............T.............. CCAGGAGGACACCATGGCCAACGTCTACACCGTG 629537 28 100.0 33 ............................ CGGTCAATGACGCTCGCGCAGACGGCGATCGTG 629598 28 92.9 33 ..............T.T........... GAAGTTGTCGTGGATGTAGTTGAAGACGTCCCG 629659 28 96.4 33 .....................T...... CCAGGGTGACGCCCGCTCGGTGGTGCTCGCGTC 629720 28 85.7 0 .................A...A.A.G.. | ========== ====== ====== ====== ============================ ================================== ================== 23 28 98.8 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCCGAAGGCGCGCCGCAGGCGGGGTCTTAGCCCGTTGGCATCGATGGCCGACTCATCGGGCTCCGCACAACTGGGCGGCATAGCAGCAGGCTCAGCAGCTGGACGAGGCCAGCTTTACGACCGACCGTACGCGCCGCCGTGACTACGGACAAGCCACCCGGCGATGTTCTGCCCGCTACTCGACAGGCTCAGGCGATCGGCATTGGCATAGATCAGCCGGTAACGTAGGGTACCGACGGAGTTCCACTTATCATCCCTACCTCGCGTTCGTGGGCCCACTGACCGCGCTCGTAGGTGGCGAGCGCGGACGTTACCTTTGCTCAGCCGGTAGACGACGCTGGCCGTCTCACTTGCGCCTCACCAACTACGCTGTAGCCGAACTCGCTTGCCCTCCGGATGCCTCCTTGCACTAACAGGCACCGAGACCGAGTAGGATGATCTTGCGGAATCTAGTGAATAAAAACCGCGAAGTCGATCTCTAACGCCCCAGGTCAAGAAGT # Right flank : CGAATCCACCATCTGCCGAACCTAGACAAAGTGGAATCCTCGGCTTATTGCCGGTCATCGTCATCGCCGGCCATCGTGTCCGACGGCCGTGGCAAACGAAGAGCCTGCCTCGTGGCCATGCTGGTACTCGTATACGGCTGAACGTCTTACAACGACCATCGATCGGATCATGACCGCCGACCCCAGCGGTACCTAAAGTGGTGAAGTGTTAACCCTCGGCGTTGACCTCGCAGCCGCAGACGAACATACGGCGACGGCCGCGATCGAGTGGCTACCAGGCCGGGCAGTGGTGCGGGAGATAGCTCTCGACATCAGTGACGCTCGGATCGTCGAAGCGAGCCGGCACGCGGACAAGACCGGGTTGGATTGCCCGCTCGGTTGGCCGGAGCCGTTCGTCGCCCTCGTCACGACCCACCAGGTCGGCCATGTGAGGCCCCCTGACGGCGAGGGCGGACCTTGGCGGCGTCACTTGGCCTATCGCCAGACTGACGAAGTGGTGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 638469-640518 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXU010000001.1 Micromonospora sp. C97 C97_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 638469 28 96.4 33 .........................C.. CTACTGGACCCGTGCCGAGTGGCTCAAGCGGGT 638530 28 96.4 33 .........................C.. GGCGACGTGGCCGACCCGGTTCACGTGGCGGTC 638591 28 96.4 33 .........................C.. CGGTCGTAACACCTACCCCCGGGTATTCCTGGG 638652 28 96.4 33 .........................C.. TCTGCCGCATGTCGGCGTCAGTGGATGCCGGGG 638713 28 96.4 33 .........................C.. CGAGGATAACGAGATCACCATTCCGGCCGACGC 638774 28 100.0 33 ............................ CTGAGCAGCTACGGGGGTAACGTGCCCGACACA 638835 28 100.0 33 ............................ CTGCCACCGGGTATCCCTCCTATGTGGGCTGTC 638896 28 100.0 34 ............................ CTTGGTGCAGGGCGGCCAGGGCCGGGGGCACGGA 638958 28 100.0 33 ............................ CTCTCGGCCTCGCGGACCGAGCATCCGGTCAGC 639019 28 100.0 33 ............................ GGATAACGGCGTCTACATCCTCTGGTACAACAA 639080 28 100.0 33 ............................ CGTCAGCCCGGCGAACCTGGCTGGCGCGCAGGT 639141 28 100.0 33 ............................ TCTCGGGCGTCGGCGTCGCGGTCGCGGCCGTCG 639202 28 100.0 33 ............................ TCCGGCAGACCCGACGTCGCATCCACCGTCACC 639263 28 100.0 33 ............................ CGGCTCGGACTGCTCGTAGAGCACCGCGCCGCC 639324 28 100.0 33 ............................ CAGGCCGAGCAGTAGCGACAGGCCGGCGCGCTC 639385 28 100.0 33 ............................ CAGACGAAGAATGGCGGCGATCAGGGCGACGGC 639446 28 100.0 33 ............................ GTACCTGACCACGGCCGAGCTCGACGAGATCAA 639507 28 96.4 33 ........T................... GAGTTCATCGAGCTGTACGTGCCCGAACCGAAG 639568 28 92.9 33 ........G.............G..... CGACGCCTGATACAGGTCGGTGTGATACACACC 639629 28 100.0 33 ............................ GAGCGTCGCGGCGCGGCCGATCACGTCCCGGTC 639690 28 100.0 33 ............................ CTCCCCCTTCTCGTCGCTGGCTCGAATGGTCGA 639751 28 100.0 33 ............................ CTGGGGCGGTCGTCTGGGCGGTCTACACCAACG 639812 28 100.0 34 ............................ CACGAGCAACGACGCCTCGGCCGAGGAGGAGGCC 639874 28 100.0 33 ............................ GCCGAGAGCCTTGGGCAGGACGAAGTACCCGAG 639935 28 100.0 33 ............................ CTTCGAGCGGGTCAGCCTCGACGAGGTGGACCC 639996 28 100.0 33 ............................ GAGGTCCGCGTCGGCACCGGCTCGGGCGAGCTG 640057 28 100.0 33 ............................ CGGGCTGGACCGCATCGCCGACGAGCTCGTCGA 640118 28 96.4 33 ...........................G TGACGAGTGGGCGCAGTACTTCATGACCGTAAG 640179 28 96.4 32 .C.......................... GTGTCGGCGGCGGGCTGGCCCAGCGCCTTAGC 640239 28 96.4 33 ...............A............ GGACTGGACCGTCAAGCGGATCCCGGGGCTGTA 640300 28 100.0 34 ............................ GCTGCGAGGGGCGGCGCGCGATCTGATCCGTAGC 640362 27 85.7 33 .....T...........-..C......T CGACGCGAACCACTGGGAACCGCAATACTCGGT 640422 28 78.6 37 ......G.A.....TC..C......G.. GTGGCCGACATCAATGCGGCACTCCGACTCCATCTGC T [640428] 640488 28 82.1 0 ...............T.......CC.AA | GC,A [640502,640505] ========== ====== ====== ====== ============================ ===================================== ================== 34 28 97.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GAGGTGCGGCCGACGCCGGCTGCGCGCTGACGTCAACCAAGCAGGCGACAGCGGCGAGGACGACTGCGCCGGCGTGGCGCGTGACGCGTGGGAAACGGGCGGAGAGTCGGACTACCCGCATGAGGGCCTCCTCGGAACTGGATGGACGACAACCGTCTCCGACGATCATGTACATCTATGTACCCGATTGTGAAGAGGTGGGGAAGCAGTTACGAAACTTCGATGAGCTTGAACGTCACTGGTTCGAGGGTGTGGGCTGGGGGTCGGGTATTCCACCCATGCCTCTCATTGCGCGTTCCGCCGGCACATGGTCCGACCCCTACCCTCAGCCAGGCAATGCAGCGCTCGCTCGTCGTATGACACAAGCCTCACCCGCTAGGCTGTCGCCAGGCTCGCTCGCCTAGATAGCCCCACGCCAAACGAGACCGAGTGGAATGATCTTGCGGAACCTAGTGAACAAAAACCGCGAAGTCGATCTCTAACGCCGCAGGTCAAGAAGT # Right flank : ACGATGGGATGGACAAGAACACCGCGAAGGGAGGTTCTCCCGCGCACGCGAAGAAGGTCAGAACTCCCCGGCCGCCGGATGCAAGGGCGAAGGTCAGCTCCTCGCGCCTTGCTTTTACTACGCCGGTCGTCCGCGCTTCCCAAACCGGCGGCGCCTTGCTGCTTTGCTCCAGCCGCCGGGTATCGCAGGATTGACGATCGGGTCAACAGGGCGACGCATTAAGGTCACCCCATCGAGATCCACCGGCACCCAGTGATGGTCGTGGGCCACGAACGAGAGCCGCTGCTCACCGGGGACCTGGTAGACCAACAGAGCGCGGCCAACGCCTGCCATCTCGGTCACCCGAGTCCACAACCTGTCTCGCACTCGGGTGCTGACGTGCCCCACGTACACACCGGCAGTCAACTCCAACAGCCACTGCGTCAAGTGCCCACGCAGCCCAGGTGGGCACGCAGTCAGGATGATGACGGTCATCAGAAGTCGACCTCACCGATGTCGGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 656601-658952 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXU010000001.1 Micromonospora sp. C97 C97_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 656601 28 100.0 33 ............................ GGGCGTGGACAGGCTGTGGGTGATGTCCAGCAT 656662 28 100.0 33 ............................ TGCCCGACTCCAAGCCCATGAGCAGCCCACGGA 656723 28 100.0 33 ............................ CGCAACCTCGCTCAACATCACCGCCGCGCCGCT 656784 28 100.0 33 ............................ GGGCGTCGGCTTCGGCAAGGTCTACGGCGGCGG 656845 28 100.0 33 ............................ GGCGGGCGCGATCTACGGCGAGTTGCACGGGCT 656906 28 100.0 33 ............................ GGCTTTCCCCTTCTCGTCGCGCTGCACGACGCC 656967 28 100.0 33 ............................ CGAACAGGCGTGGCCGGTGTGCGTGCTGGTCAC 657028 28 100.0 33 ............................ GGTCGACGTCGAGGCGATCGAAGAGGCCCTCGC 657089 28 100.0 33 ............................ GGGTGGGCGGGCTCAGAAGGCATGGCCGGAATA 657150 28 100.0 33 ............................ GCGCACTGGAGTTCAAGCGAATTGACTAATCCC 657211 28 100.0 33 ............................ CCGCGCTTCCGGGCGAGAATGCCGCCCAACTTC 657272 28 100.0 33 ............................ CTCTTTCGCGTCCACGGGTAGATCCTCTCCTTG 657333 28 100.0 33 ............................ TCAGGTAACGCTGACCTTTGCCGGCGACGACGC 657394 28 100.0 33 ............................ CGTGTCGAACACCTGTGCGCATCGCTCCAGCGC 657455 28 100.0 33 ............................ CATCCGCCCCGGGCGCTCGACCAGGGGCCGGAA 657516 28 100.0 33 ............................ GGTGCTGCTCCCCGGATGCCCGCACCGCGACCC 657577 28 100.0 33 ............................ GAGCGCACACACCAAGATCCCCGCGATCCTCAG 657638 28 100.0 33 ............................ ACTGACAGACCCCGCTTTCAATGCGCGGTCTAT 657699 28 100.0 33 ............................ GGCTCGGCAGACCTCGGCGGATCAAGCGGCTAC 657760 28 100.0 33 ............................ CGAACCCGCGTCGGGCTCGTTCCAGGCACCCCG 657821 28 100.0 33 ............................ GTGTTCGCGTCGTCGCCCGCGGCGGGTACCTCT GGGT [657838] 657886 28 96.4 33 .A.......................... GGCGGCCCCAGCCTGACCGGTCTTGACCAGTGC 657947 28 96.4 33 ....C....................... CAAGGTCACCCCGTCGGGGGTGGTGGCTAGGGC 658008 28 100.0 33 ............................ CTTCGGATCGGCCGCGAGAGCACCCGAGCTGAG 658069 28 100.0 33 ............................ GTAGCGCTGACGCTGCCGAGCCTTGTCGCCCTC 658130 28 100.0 33 ............................ CTGCCGGGCCACATCGCGCAGGCCGCCGCCGCC 658191 28 100.0 33 ............................ CGCCCGCGACGCCCGGGCAAGGCCTGGTCGACC 658252 28 100.0 33 ............................ CGGGCTGCCGGCGCCCCGCGTCAGGTTCGCGGC 658313 28 100.0 33 ............................ GCCGAGGTGTTGCGCCATGTCGCGTCGCCACTG 658374 28 96.4 33 .......................A.... TGCTGACGCGGCCGGCGCCGACCCCGCCATTCA 658435 28 96.4 34 ...........A................ TCAGGCCGCTACCGTTCAGGGTCCACCCCGCCGC C,C [658440,658452] 658499 28 96.4 33 ..........................T. GCGCACCAGCGCGTGCACGTGCGCGCGGATGAC 658560 28 96.4 33 ......A..................... GGAACCGGAGCCGACCGAGTAGGAGCAGTAGTC 658621 28 92.9 33 ..........G...G............. GTTCACCAGCGCGTCGGGCCTGGTCGGGCCCCA 658682 28 96.4 34 ........................C... CCGGACCCCACCACCCGGCGTTGAAACCGATGTC 658744 27 96.4 33 .................-.......... CACGCCCTCGACGCGTTGCGCGAGTACCGACGC 658804 28 85.7 32 ....C.......T..........AG... CGCCTGGCCACGCCACCAGTCGAAGTGCTTGC 658864 28 96.4 33 .....................A...... GCACGGCACGTTCGCCGACAAGGCGTATCAGCA 658925 28 85.7 0 .........A...GT.T........... | ========== ====== ====== ====== ============================ ================================== ================== 39 28 98.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TCGCGGGTCGCTCATCGAGCACCGGCAGCGGAGCCCTGCGCATCGATATCAAACGGCTCGCCATCCCGGTACTGCCGCTAGACCGGCAGCAGGCGTACGGGAAAGCCTTTTGCCAGCTTGTTGAGTTTCGGACCCGACTCGATCGGGCCGCAGCAACCGGGGCCGCACTCGCCCGCGAAATCGGCGACGTCCTGACCGCCGGCACCCTCGGTCCCCCGTCCTAATCAGACCGTCTACGTGCGGCCCACGTGTTCGTGTCCCAGCCGCGGATTCGCTACCGCTTCTTAGGCGCCGGTGTACGTGGCCTCACCTCCTCCCCGCGCCGGTAGGGCAGCCATAAGCGTCGCTAGTCGCTGAATGGGAGACTCATCAACTACGCTGCAGTAGGGGTCGTTTGCGCTCGAGGACATACTCCCTCAGCCAAGACCAAGTGAGACGATCTTGCGGGCCTAGTGAATGAAAACGGCGGAGTTGATCTATAGCGCCGCAGGTCAGGAAGT # Right flank : CCGCCACGGGGTTGACTTCGTGGTCTCGGGTACGGCTCCCTGCACATGCGGTCCGCCACCGTGTAGTTCGGAAATGTCGTCTACCGGCCGCCGTGGCTCCGAGATGCTCGCCTTCCACATGTCAGCGGGCCCTTCCCATTCGATCCTTCGATCGCGTTGACACCGCTGATTGAGGGAGGTCGCTCGAGGCATCCACTTGGCGCATGCCAACCCAGGAACACCCAGCATCCTGTCTGCCATCGACCCGCCCATCGGGGAGCGGGCCGCCGCCCGGTCCGCCACGGCCCTCGAACCTCGACGCCTCGGTCGTACGCTGGCGGGCCGGGCGGCGGCCTGCTCGGCTTGCCCGGGTCGATGTCAGACAGGATGCCCTCACCGCAGCCACTCACTTTGCCGGCGGCCGCGGACGACCTCCGGCCATCCTGGAGCCGGAGCACCCCCGCCGGAGGCGCCGTAGCCGCGGCCCTCGCGGCGGCCGACCCACGGTACGAACGCCTCGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 724612-727381 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGPXU010000001.1 Micromonospora sp. C97 C97_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 724612 28 100.0 34 ............................ CGGCAACCTCTCGCGGCTGGTCGACCTGGTGGAG 724674 28 100.0 33 ............................ GGCCGACCCGCCGGCCGACCCGGAGGACGACGA 724735 28 100.0 33 ............................ CCGCGTCGATCTCGGCGAGGCGCTGATCTGTCC 724796 28 100.0 33 ............................ GGTCGCTTCCGCCAGCGAGGTGGCGACGGAGAA 724857 28 100.0 33 ............................ CCGTGCGCTTCCAGGTCCACCACGACCTGCGTA 724918 28 100.0 33 ............................ TACTCGCCCCGCAACCCGCTCGGTGCCTACTAC 724979 28 100.0 33 ............................ CGGGTTCGGCTGGCCCTTCGGCGGGTCGAGACT 725040 28 100.0 33 ............................ GGCCCGCGCCCGGCTCTACTACGTGATCTGGCA 725101 28 100.0 33 ............................ CTGCCGCCGACGTTCGTGCCGGGTTCCACGGAC 725162 28 100.0 33 ............................ TGGCGCTCAACATCTTCCGCACCGCCGAGGAGC 725223 28 100.0 33 ............................ TGCCGAATCGGCCCGCCACCCCTTAAGGGTGAC 725284 28 100.0 33 ............................ GGTGTTCGGGTGGTTGCCCGGCGGTCCGGCGGC 725345 28 100.0 33 ............................ TTCGTTACCGAACCGACCGCCATCCCTAAGGTC 725406 28 100.0 33 ............................ GATGGACATCATCTCCATCGACACCCTGTACGG 725467 28 100.0 33 ............................ CAGTACGGCCGCACGGTGGTCGGTTCGGACTAC 725528 28 100.0 33 ............................ GACCGACGCGAACGATCAGGAGTGGCGAAGTGA 725589 28 100.0 33 ............................ ACCACGTCTGGAGAATCCGGCACTAAGAAGATC 725650 28 100.0 33 ............................ GATGGCGGCCAAGTCGGCGGCCGCGGCCAGGGT 725711 28 100.0 33 ............................ GTTGGCCCGCGCGCTGGTCGGGATCCGGTCGTG 725772 28 100.0 33 ............................ TCACCTGCGCGTCGTGCCCCGAGTGCTGCACGA 725833 28 96.4 32 ..............G............. CTCGTCGCCCTGGTGCCGGTCCTGGTCGTGCC 725893 28 100.0 33 ............................ TCGTCGCCATTATCGGCACCATGACACAAGGGA 725954 27 96.4 33 .................-.......... GTCGCGGCCGACATGGCCGGGGCTGCGCTGACC 726014 28 100.0 33 ............................ CACGGTGGCCCGGTACGAGGTGCCCACGAAGAT 726075 28 100.0 33 ............................ CACGACCGCGCCGACGATCCGGGTGGTCAACGG 726136 28 100.0 33 ............................ CCTGCACAACGGCAAGCCGCACCACTACAGCGG 726197 28 96.4 33 .....................A...... GGCCGAAGCGGTCATGCGGGCGATCCTGCCGCA 726258 28 100.0 33 ............................ CGCGAGACGGCCGCCATGACCGACGAGGCGCGT 726319 28 100.0 33 ............................ CGGGACCGGGGCGATTACCTCGCGGTCCTTTCC 726380 28 100.0 33 ............................ CTCAACGAGGTCGAACCCGTACGACGTGTCCGC 726441 28 100.0 33 ............................ CCCGGCGACGTGGTTTGCCCTACAGACCACGCT 726502 28 100.0 33 ............................ GGCGTGGAAGACCGTGCAGGATGTGGCGAAAGC 726563 28 92.9 33 ....C..........T............ CGTCCACGTCGCGCTGTCGGCGTCCTGGACGGT 726624 28 96.4 33 .....................A...... GGCGGTCACGAAGGCCGGTCCGATCGTCACGCA 726685 28 89.3 33 .................A.T.......G GACGCTGTTCAGTACGGGGCGCTGTGCCACCAG 726746 28 100.0 33 ............................ GTCACTCGACCGTGCCGCCTTAATCGCGGGCTG 726807 28 96.4 33 ................G........... CAGTTGAGCGATTCGGGTTGCGGTGGTGCCGCC 726868 28 100.0 33 ............................ CGGTGACTGGAGTCGGCGCGTTTCAACGCTTTT 726929 27 92.9 33 ..A..............-.......... GTTGATCCACCCCGTGCCGGTGCCCATCGCGAT 726989 27 92.9 33 .....-...............T...... GGTAATGCCCGTGGCCGACCCGCGATCGGCGGA 727049 28 100.0 33 ............................ GACGTGGCGACGGCGCAGCGGTGGGAGGCCCTG 727110 28 96.4 33 ..............T............. GGCGGCAGCCACGGACCTGGGCGCGACCATCAA 727171 28 92.9 33 ..........T...T............. CAGCTCCAGCAGGGTGGTCGAGGTCAGCCGCAT 727232 28 92.9 33 ....................AA...... CACGGCCAACGTCGGCATCTGCGTCATTGGCCC 727293 28 92.9 33 ..............A..A.......... CGGCACCATCGGCGGCTCGGGCGCACAGTCGAT 727354 28 96.4 0 ............T............... | ========== ====== ====== ====== ============================ ================================== ================== 46 28 98.3 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : ACCGTTGTCGGCCACGCCACCGCGACGGGCGCCGGCTACTTCCCATCGCCAATCTGCGGCCGCGCCCGGCCACAGATTGATAAGCAATGGCCATATCTTGCTCCAGCTTTCTACCCCGGTCGCGCCGCAGTGGTGGTTCGGCCCGACCGGACCTGACCGACCAGAGTTCCCGAGGTCGGCAGGGCGGCATCCGGGCGCCGGGGGTGTGATCCCGTCCGCGCTGAGGGTGATGTTTTGGAAGGTGGGCAATGCCCGAAGCGGCATCGATAGCCGCGCACAACGCCCACGGCTTAATCTTCATCAGCGGGTGTTCGACCTCGGCGCACCCCGTGCGGCGATGCCTGTTCGCCGGGCGCTCCACTTAAGCCTCATCATTTATCCTGTAGCGGAGTCCGCTCGCCCTCTACCTACCTATGACGCGAACGCGAAGTGAGACGGCCTTGCGAGACCTAGTGAATGAAAACTGCGAAGTCGATCTCTAACGCCGCAGGTCAAGAAGT # Right flank : CCGAGTCGCCGGCTTGTTTGCGTTGTTTGAAGTCCTGCTCAGCCGACTACTCAACGCCAAGCAGCTTGAGGATCGCATGAACGGGCACCACGTACCGCCGGCCCACACGTAGAAGGCGCACCGGGAACTCGTTGGTTTTGGCCAAGTCATAAGCCTTCGTGCGCCCGATTCCTAAGATCGCTCCAGCGGTCTCAATATCGGTGGTTACGCCGAGGTCACGTACCGCATCGATCGTCCACACCTGATCTTGCAACCGACTCGACTGGCGTCCGTCGCTTGTGGTGGTTGCCATCGTCCGCGTCCCCTTAGTCGTGAGCACGCCGAAGTCGGCGTCAGCCCTCACGATGCGGGCAACCCGTTGCCTCCGGCGTTCCCAACGCAAGCAGCCCAACAGGTAACGACATCAGCAATAACAACCACGTGCCTAGGGCCCTGCTGGCGGCCGGGACACCGGCCGACTCGAAGTCGGAGGACAGCAGGCTGTACAGCTGGAGACGAAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //