Array 1 8308-5429 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUIS01000013.1 Listeria monocytogenes isolate 16C01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 8307 36 100.0 30 .................................... ATAGAATTTAAATGATTAGAAGGGAACTCT 8241 36 100.0 30 .................................... TCTAAACGATCCATTTGTATATTGTGTTAC 8175 36 100.0 30 .................................... TTGTAATCATCTTCACTTCTCATATATAGG 8109 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 8043 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 7977 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 7911 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 7845 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 7779 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 7713 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 7647 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 7581 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 7515 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 7449 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 7383 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 7317 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 7250 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 7184 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 7118 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 7052 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 6986 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 6920 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 6854 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 6788 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 6722 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 6656 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 6590 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 6524 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 6458 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 6392 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 6326 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 6260 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 6194 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 6128 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 6062 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 5996 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 5930 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 5864 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 5798 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 5732 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 5665 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 5599 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 5533 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 5467 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5432,5435,5440] ========== ====== ====== ====== ==================================== =============================== ================== 44 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1174113-1172784 **** Predicted by CRISPRDetect 2.4 *** >NZ_FUIS01000014.1 Listeria monocytogenes isolate 16C01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 1174112 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 1174046 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 1173981 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 1173917 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 1173851 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [1173842] 1173783 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 1173718 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 1173653 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 1173587 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 1173523 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 1173458 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 1173393 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 1173328 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 1173265 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 1173202 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 1173136 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 1173073 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 1173008 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 1172942 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 1172877 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 1172813 29 93.1 0 .......................C....C | A [1172788] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //