Array 1 51976-50786 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGP01000036.1 Lactobacillus crispatus strain VMC3 VMC3_v1.0_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 51975 29 96.6 32 ............................A CATTGTCAGGTGGTTTATTAATGAGCTATGTT 51914 29 96.6 32 ............................T TACAAATGGCTGCAAGTGGCTTAATGATGATG 51853 29 96.6 32 ............................T CCAGGACTTTCAATTGTCACATGTGATTATTG 51792 29 100.0 32 ............................. AGATGGATTAAACAATTTTTAACGGCTGGTTT 51731 29 100.0 32 ............................. CACATTCTCGATGTTTTCAGGGTCAAGAGGGT 51670 29 96.6 32 ............................T ATCAGCGAGCAAGTAATAGCATTCACGTGGAA 51609 29 100.0 32 ............................. CTTTGAGACCATCTTATGAGCGATAGCATCAT 51548 29 100.0 32 ............................. ACGGTCACAGATCAAATCTTGCATGACATGAC 51487 29 100.0 32 ............................. GAAAAGCATTTTCACCGAACAGATAAGTATTT 51426 29 100.0 32 ............................. TAACAAGGATCAAATTTAGTTAATGCTTGCTA 51365 29 100.0 32 ............................. ACAATATCTTGAGCTTGGCTTTTATTGTCGAA 51304 29 100.0 32 ............................. AAGGTCATGGCTTCAATGCAACAAATCTTGCT 51243 29 96.6 32 ............................T GGGTTAGTGATCACACACCAAAACCTGTTAAG 51182 29 100.0 32 ............................. ATCAGGACGACCTGAAACGTTGCTCCAGTCAA 51121 29 96.6 32 ............A................ GTATTTGGTAGCCGTTACTTTGCTATCAGATA 51060 29 100.0 32 ............................. TCTTTTTCAGTGAACGTTGTGTCCTTAGTTCT 50999 29 96.6 32 ............................T GCGACTATGGTTTCATGCTCTAACCAAAGAGT 50938 29 100.0 33 ............................. ATGGGTGAGATTATCCGGAAAGGATAAGATATG 50876 29 96.6 32 ............................T AAAAAGGAGTTGAAAAACTCCAAATATCGTGC 50815 29 89.7 0 .........................AA.A | C [50790] ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.1 32 GTATTCTCCACGTGTGTGGAGGTGATCCC # Left flank : TTCGTGAACAAATTCTGCGACTGACTTCACAAGAAGTACCACATGCTACTGCTGTCGCAGTTGATCATATGAATACTCATCAAAATGGCAAGCTCTTGATTGAAGCGACTATCTATGTTGAGAAAGACGGTCAAAAAGGCATTATTATTGGTAAGGGCGGTAAGATGCTCAAGCAGATTGGGATTAATTCACGTCAAGAGATTGAAAGATTGCTTGGTGAAAAGGTCAACTTGCGTCTTTGGGTTAAGGTCCAACATAACTGGCGTTCTGACCCTAACTTTTTAAAGCGGATAGGCTATGACAAAAAAGAACTTTAGTTGAATTACTGTTGTATAAGCGTTGTCGAAAGATGACGTCTTTTTTGTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTACT # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATGAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGACAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTGAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 67587-66946 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGP01000036.1 Lactobacillus crispatus strain VMC3 VMC3_v1.0_contig_36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 67586 29 96.6 32 ............................C GGTATTAACTAATGAATACCGCAGATGAAGTT 67525 29 100.0 32 ............................. TGCAGTAACTTCAAATAGCTTTCACGGTCAAG 67464 29 100.0 33 ............................. ACAAAGTTAACGATGATGACTTAGGTCCAGCAT 67402 29 100.0 32 ............................. ATCAGAGCCACCTTTAGAATATACTCGAATTT 67341 29 100.0 32 ............................. CACGTCAGCCGACCAGCTAGTTAACTCAGTTG 67280 29 100.0 33 ............................. GATATGACAGTACCTAAAGGACAGGCGGGAAAA 67218 29 100.0 32 ............................. GATATGAATAAATCTTGAAACCAACCTTACCA 67157 29 89.7 32 ..........................TTG AGCAACAGGGTCGATAAAGAAACATCTAAACA 67096 29 96.6 32 ............................C ACCTTGCCTTGTTGATGAAACTCTATTATTAT 67035 29 100.0 32 ............................. CCAATTTTGGATGAATTAAAGCTGAAATTTAA 66974 29 86.2 0 ............TG........C.....C | ========== ====== ====== ====== ============================= ================================= ================== 11 29 97.2 32 GTATTCTCCACGCATGTGGAGGTGATCCT # Left flank : TTGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAAGAAACCAGATAAGTTCTGATTTTTATCTCCTCTCTTAATTCACCTAAACTATTGTAGCTCAGCAGTTTTACGAGAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATGAGTATATGTGAATATATTTGTTTTTACCTAAGCTAGTTAAAAACGGATGATAAAGCAGGATTACAGCTAAAGTGGTAGGGTGAGATTCTCAATCGTGAGCGAAAAAGGATTGGCAGACAAATAATATATTTTAGCTTAAGAGAAATCATAGCTGAATGATGTTATGATTTCTCTTTTATTTGGATATTATATCAAGCGGATATTGTCTATTTAATAAGAATTGATATACTTGGTAATAGGATCAAAGTGATGAAAAAATGGTGTTTGCATATTTTCATTTAGCGTTATAAAGGGATTTGTTTACT # Right flank : CTGCCTGCCTTAAGAACTTGGCTACCTGCTGCGTATTCTCCAGGTGATCCTAAAAAAATGAAAGGACGGTTTAATCGTGATACTAACTCCTAAAGAGTTAGATAATGTGTTAGAGTATACGGATTATGCACCATTACCAATATTAAAAAGTAATGCTACAGATAAGCAAAAAATTATTTATGTCGATTATATTGTTGAACGCTTAAATGAAAATAAAGTAGATGCTCCTTTTTTTAATAAAAAGTGTAAATAACATAATCTTATTTTTTAGAAAAAATATAGCTTAGAGAATCATTGTATTCTCCATATATGTGGAGCTGATTTAAAAAAGTGATAACTATATTTTAGATATTCATTGGTATGAGATAAACGAAGAGAAATTGTATTTACCTAAAACAAAGAGGGTATAAAAATGATGAAACTTAAATATATAGGCGAGACTTTTTATGATGGACTAGGCTTAACGAATGGTAAAATCTATGAATGTTTAGGTGAAGAGG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGCATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 69621-70046 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGP01000036.1 Lactobacillus crispatus strain VMC3 VMC3_v1.0_contig_36, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 69621 30 100.0 34 .............................. TTGATCTCAAAACTGATCCTGTTGTTCTTTCTTA 69685 30 100.0 36 .............................. ATTGCTAGATAGTTTGGACGGTCATTTTCCCATTGT 69751 30 100.0 35 .............................. TCTAAGTTGTTCTGCTACCCTAATGTGATTTCTAC 69816 30 100.0 36 .............................. TGTATTCCGGCAGAGTTACTGGAGTAATTCAAGGTA 69882 30 100.0 37 .............................. CCAATGTAAATGGGCGCTTCGGAGGGATGCACAAAAA 69949 30 100.0 38 .............................. GCAGAACAATGTTCCCTTTAAAGCCACTTTCTGATCCG 70017 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 ATTTACATTTCTCTTAAGATAAATAAATAC # Left flank : GACCACCAGTATAACCAGAAACTACTTTTTCTACTCCGTCAACTGTATCGAAAGGTTCGACCATGCACCAAAAACAACCGCCAGCGAAGATTGCTGTGTCGTAGTTAACTTTTGCCTTGCTATCAGTGGTTTGGACTTGTTTATTATTCTCTGTCATTCTTTGAAATTCCTCCATTTTATTTGAATTTTACTGCTTTTATCATGCTTTTTATATAATTTTATTCATTTTCTAGTTATATTCAATAATTAGACCCAGGGTTAAAAAAGTATATCCTTTCTCTGGCATGAACAATTACTGAAATAATTATTTTTATTCTTATCACTATTAGTAGTTTGCTTATTTATTTTAACTGTCTACTTGATGCAGTATGAATCATCTCTGGTGCTCCCACTTTTTGTTTCTCATGGATTCGATAAATGTCAAGTTGCATCGTAACAAATGAAAGCCGTAACTTTATTTATACCCGGAGCAAGCGCAGCTTGTGAGGATAAGGAATTGA # Right flank : CAGGACCTATCTCTAACCCTTATATATCAAGCACTCAAACAGCATATTCTGTCGATCAACCTTGAATTACTCAAAATCTATGTTTTTATTATAAACCTATATTTAGATTTCACAAAATATCACCAAACTTTGCATCTGTCCATCTCCAAACAAAATTCTATTATTGGGCATCGACAAATTTTATATTTTTATTCAAATTCAAACATTACGTTATTCTAAGATTATTGATGTCTTTATAAAAATTCAACTTAAAGTAATACCAGCAAGACTTATACTAATCAATGAATGCTGTCATACCAATCTATCTCTTAATTCTTAGGAAGAAAACATATCAAAAAAATAGCTAACTTAGACTTAACTCCGATTGAATATCAAAATCAAGTCTTAGTTAGCTAGAATAAATATTCGTCTACTTTTATCTCTCATTACAAAATAAATGTGCTAATAATTGACTTTAAGCTTTTAGATTATTTTTTAGGTATAAAAATAGATTCTTGCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATTTCTCTTAAGATAAATAAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 6383-6716 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJGP01000017.1 Lactobacillus crispatus strain VMC3 VMC3_v1.0_contig_17, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 6383 28 100.0 34 ............................ CCTGAAGGCAGAAGTGTTAGAAACATTGGTGTTG 6445 28 100.0 33 ............................ CATTGTTGATATTACCAATAAATTGGTAAGCAA 6506 28 100.0 33 ............................ GCTCAGAAAAGCAAATTAAGTGGGCTAAGGACA 6567 28 100.0 33 ............................ ATCATGACAATAATTGAAAGAATAGCGGATGAA 6628 28 100.0 33 ............................ CTAAATTAACAGCAGTTTCAGAATGGTCATCTG 6689 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 6 28 100.0 33 ATAGGATCCCCACACTCGTGGAGAATAC # Left flank : ATTACAAAATAGGACATCGCTCACAATGTGCTATTTACTTAAGCCATTTCTTCTTCCCGAATGCTAATTTCCAAAATGCTATGATGGCGCTTATGCCAAATACCATTAAATTTTAGTTTCAAACATATTTTTGCTTTTTTATCCTTCACTAAATTATTTTTTCTAGGATCCTTTTTCCTGTAGCTTGTTCCGTTCCTTCGGCAGTAACTACCCATTGTTTACCAAATTTTCTGACAGTACCTTCAGAGAATTTTTTAGACGATTGACTTACAGTTTTCCTAACATAGCCTTCAGAAACGCCCCAGATTTTTGTGGCTTCTTTTGCTTCCAATATATTTGGATCGTTCAAATTTATACTCATAGTTTAACTCCCACATATGCCAAAATCTTTAACAAAATAATCAATACCGATCCATACAAAATAATTGTCCATACTAAACGTTTACTCATAGTCTTTTTTCCCGTTTCAAGCTTCTCACTTATTATCCCTTTCAAAAATT # Right flank : CACTAAATGATCCACGATATATCAACATCCCTCAATCGAAATAATATCATTTTTAATCACTTTTAACAAAGACCAATAATAAAGCCATAATTACAAAAAGCCACTCCAAATAAAAAAGAAGCATTTCTGCTTCTTTTTGAATAGTTTTGCTCCCAAAGTGCCCCTAGGATTCAAATTTCATTTATAAATCCTTATATATCAAGGTTTAAGGGCTATCCATTAAACGATTTCTTGCTCCTTGAAGCGACCATATACTTTTTCAACTTCACTAACACTCATGAAAGCATACGGATCTGCTCCTTGCACGATTTGGCGAATATCATACATATCATATCGATCAATAATGGTAATCAAAACTGTCTTTTCAATATGACTGTATGCACCTTCAGCATCGTGCAAAATAGTGATTCCACGATGCATTCGATTCTGAATTCCATCAATAATATGCTGTGGATGCTGAGTAACAATCATTACTTGCATCTTCTGGTGTTGGGTGTAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAGGATCCCCACACTCGTGGAGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //