Array 1 172439-174420 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPB01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 172439 29 100.0 32 ............................. GTTCGCCCGGTATCCTCGCCAGTCCGCGACCT 172500 29 100.0 32 ............................. GGCGCCCATGAGGTATCCCGACAGGAGCACGA 172561 29 100.0 32 ............................. CCAGCGTCATGCTCTGCTCGTTGTTCCGGCGT 172622 29 100.0 32 ............................. CAGGAGACGACATAATACGTGGTGACTTTTGG 172683 29 100.0 32 ............................. GTCAGGGCGTTGATCGTCCAGTCCCGGTCCTC 172744 29 100.0 32 ............................. ATTAAATAATCATTTACCATATTGCAGGTACA 172805 29 100.0 32 ............................. ACCGGGGCCACGACTTACGTCAGCGCGCCGAT 172866 29 100.0 32 ............................. GCGGCTGCTATTCCGGGGTGGGAGGCCGGCGC 172927 29 100.0 32 ............................. GCGTTTTCCAGGCGTTGCGTTACGAGCGCGAT 172988 29 100.0 32 ............................. AAAAAATCCTTCCTTGTGGCTGTGCTGCTGGC 173049 29 100.0 32 ............................. GCAACTGGAACAACGATAGCGGGCAACTGGTT 173110 29 100.0 32 ............................. AGTTATGTTGAGTTCCGGGATTTCAATATCAG 173171 29 100.0 32 ............................. ATTATATAAAAGGCGGCGGCAATGACGGAGGT 173232 29 100.0 32 ............................. ACCACAACATCATTCAAACCGTATAACTACTG 173293 29 100.0 32 ............................. AAAAAAGGAACACACATGGCCTTAGAAGATGA 173354 29 100.0 32 ............................. ACGCGATGTCGGTACATGATATGACCACAACA 173415 29 100.0 32 ............................. CTGAGTAGCGATCGCCCCAATCCAAATTTGAT 173476 29 100.0 32 ............................. CCGGAGAAATTCAGGGTCATGGATGAAGCCGG 173537 29 100.0 32 ............................. ATCTTAACCAGCAGGCTGGGTTTGGCGGGATC 173598 29 100.0 33 ............................. GCTTTAGCCACGTTCCCACGCGCAAACACCAGC 173660 29 100.0 32 ............................. GTGATCGCGAGTGCTGAGGCTGAGGTTGAAAT 173721 29 100.0 32 ............................. GTGAGGTTTTTTTTGAGGAGTCCGCCCAATGA 173782 29 100.0 32 ............................. AGGCTCAATTGCGTGAGGCTTGGGAACGCGTC 173843 29 100.0 32 ............................. CGACGCGCTGGGGCGACTGGTTTTCACCGAGC 173904 29 96.6 33 ...........................T. GGTTAACACTGACCCGGCTGCGGTCGTCGCAGC 173966 29 100.0 32 ............................. ACCGCGTGCGCATGGACATTGCCCGCTGGGAT 174027 29 100.0 32 ............................. GTAAAAAGCCGGTTATGCGCAATAATCAATTC 174088 29 100.0 32 ............................. CTACTTGGCGTGATGCGCTGCCGAAAATTTTG 174149 29 100.0 32 ............................. CGCGTGAAAAATTGCGTTACCGCCTGGGTGAG 174210 29 100.0 32 ............................. CGCCTGGCAAATTTCACCGTTAACACGCTGAG 174271 29 100.0 32 ............................. CCGGTACGCGAGGGGATTAACCTCCGGGCCGA 174332 29 100.0 32 ............................. TCTCCAGACTCACCGATATAACCCCCTGGCAC 174393 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTACAGCCTATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACCCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190928-193641 **** Predicted by CRISPRDetect 2.4 *** >NZ_CZPB01000005.1 Salmonella enterica subsp. enterica serovar Weltevreden strain 2511STDY5712418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190928 29 100.0 32 ............................. CGGTACGAAAATTTTTCATTTTTTATCCTCTG 190989 29 100.0 32 ............................. GAAGCGCCGCTGGGGCTGGTGGCGGCAGGGTT 191050 29 100.0 32 ............................. TCGTTTTTCTTATCGGTGTGGTTCGGTCGTAA 191111 29 100.0 32 ............................. CCCGCATTTCTCGGTGATCGACTTTGTAACCT 191172 29 100.0 32 ............................. GCGCAGCCCTCAAACCCACAACATACGACGAT 191233 29 100.0 32 ............................. CCAAAGAGCTGACATTGCTAGACCCTCATATT 191294 29 100.0 32 ............................. AAGGGCGGATCACTCTACGTCAGCACGTCATT 191355 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 191416 29 100.0 32 ............................. GTGGCAACAACGTAGCTAAAGAGATCGGAGTC 191477 29 100.0 32 ............................. GAGGGCGCGGAAATCGGCAATAAGGTCCGGGC 191538 29 100.0 32 ............................. TGGGCCATTGGCGTCTCATCAGTATCAACACG 191599 29 100.0 32 ............................. GCAACCATCGAACTACCCGCTTCAAAATCACC 191660 29 100.0 32 ............................. GGAGTTAATGACAAATTTGAGGAAAAATGTTG 191721 29 100.0 32 ............................. AATGCGACAACTCGTCTACTGGTCACAAAAGG 191782 29 100.0 32 ............................. TGTTTTCCGCCGCGTCGCAACTCATGACAGCG 191843 29 100.0 32 ............................. TGGATGATTCCGTTTATCAGGAGTTCGCTGCG 191904 29 100.0 32 ............................. TTTAAGATACTGGTCGCCGCGACCGCTCATGG 191965 29 100.0 32 ............................. CCATATAGCCCCCTCTTATATGGCGTATGAAA 192026 29 100.0 32 ............................. GCGGGTGAAGTTACCTCCGAGGGCTTTCACGA 192087 29 100.0 32 ............................. CCGTGACAGACGGCGCTTTAACGCCCGGTGGT 192148 29 100.0 32 ............................. GCCCCGGTCATGAATTGCCAGCGCCGCCACCA 192209 29 100.0 32 ............................. CATTGGTATGCCGTCGAATTCAACACGCGTAG 192270 29 100.0 32 ............................. CGTTCGCGAGGAATACTGCCAGTACCGAATTT 192331 29 100.0 32 ............................. GTGTGGTGGCCAATGGCAATTAATAACAGAAA 192392 29 100.0 32 ............................. GCAGCGAGACCACGAAAGAGGGAATACCGACA 192453 29 100.0 32 ............................. GTGTGCGTGATGAGGTTCGCGGAGCATGTTCT 192514 29 100.0 32 ............................. AGCCCCTTTCTGATTTTTTCCGTAATGTCGGT 192575 29 100.0 32 ............................. CCATGTTTGATTGTGCGGATTGACCAAAAGCC 192636 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 192697 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 192758 29 100.0 32 ............................. GGCAGATTTACGACAACAACCCGGCAGCGGTG 192819 29 100.0 32 ............................. CGAATTACTACCGGGCTAACACAAGTGGTAAG 192880 29 100.0 32 ............................. GAATTGTTGCTACGACTAAACAGGGAGGGAGC 192941 29 100.0 32 ............................. AAATTAGATGATCTGGACAACTGCCCGCAATG 193002 29 100.0 32 ............................. ACTCAGGCGGAGAACTGGCCGCATTAACTGTT 193063 29 100.0 32 ............................. CTGGGTGTCCAGCGGACATCCTCAGCCGGCGG 193124 29 100.0 32 ............................. AGATAGCGTGAGGCAATTCTTAGCGTTGAACT 193185 29 100.0 32 ............................. GGAGGTTGCACCTGAGCGCCCCTTCACTGGAC 193246 29 100.0 32 ............................. CCAGCAGCTTGCGGAAAAGATCCGCACTGCCT 193307 29 100.0 32 ............................. TGGATAAAACGGTGTTCATATTTATTGGTGCG 193368 29 100.0 32 ............................. CGGCCTTTGCCCCCAGGAAACGATGATGACCA 193429 29 100.0 32 ............................. GCTAAAACGGCGCTTGAGAACAGTATCAATAT 193490 29 96.6 32 ..........T.................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 193551 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 193612 29 93.1 0 A...........T................ | A [193638] ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //