Array 1 297555-295816 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWOA01000003.1 Pseudomonas aeruginosa strain 6088 IPC1335_3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 297554 29 100.0 32 ............................. GGATTGCTTCGCCCATCTGCCGGGCCTTGCGA 297493 29 100.0 32 ............................. ACCGGATGCAGTCTTAATCCCTTTTTGCGTCG 297432 29 96.6 33 ............................A GTTATGCTGGTGCTGTCATAGATCATGTCGAAC 297370 29 100.0 32 ............................. CTCTACGACGAGAAGTTTGGCCTGTCGCTACT 297309 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 297248 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 297187 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 297126 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 297065 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 297004 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 296943 29 100.0 32 ............................. CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 296882 29 100.0 32 ............................. TCGGCCATCACTGGCAAGGTGCGCGAAGGCGT 296821 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 296760 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 296699 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 296638 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 296577 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 296515 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 296454 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 296393 29 100.0 32 ............................. GCCAGCAGGGATGCCAGCACGCAGCCAGTCGC 296332 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 296271 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 296210 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 296149 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 296088 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 296027 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 295966 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 295905 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 295844 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.1 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGATAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 307854-306727 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWOA01000003.1 Pseudomonas aeruginosa strain 6088 IPC1335_3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 307853 29 96.6 32 ............................A GCAGGATTTGGAGTCGGAGCGTTTACCTACAT 307792 29 100.0 32 ............................. GTGAACGATGCGAATCGGGCGGGGGTTTGGTC 307731 29 100.0 32 ............................. GCTTGGTAGATGCCTGGAACAAGTCGGTCAGC 307670 29 100.0 32 ............................. CGCGCTGTCCTCGGCCTGGACTGGACCATCGA 307609 29 100.0 32 ............................. TGGGCGAACGACGGCAGCGTCACCCAGGCGCA 307548 29 100.0 32 ............................. ACAGGGACGTTCTCCGCGAGCTGGCCATCGAC 307487 29 100.0 32 ............................. GCAGAGCGGATTGCTGCCCGCTTTGTCGGCAC 307426 29 100.0 32 ............................. GGGGTGGTAGCACCGGACTCGCGGATCTTGAA 307365 29 100.0 32 ............................. GCGTACATGACTGAGGGAGAGTCCACGGACCT 307304 29 100.0 32 ............................. TCATATAGCTTGTATTTTTCCTTGCTATGAGA 307243 29 100.0 32 ............................. AAAAACGACGGCATTCACTACGCGCGCCAGGC 307182 29 100.0 32 ............................. GCGTTCATTTCCCAGGACGTGGACCAGCTGCG 307121 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 307060 29 100.0 32 ............................. TTCATGAACGGCAGAACGTTGAGCGCCGATTT 306999 29 100.0 32 ............................. GTTGTTCTAGAGTCCGTTCAGGAGATGCTTCT 306938 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 306877 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 306816 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 306755 28 79.3 0 A..........A..C.....-..A....T | C [306746] ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACCGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTTGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTAATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //