Array 1 11225-14630 **** Predicted by CRISPRDetect 2.4 *** >NZ_UPHQ01000292.1 Mycobacterium innocens strain MK13 isolate MK13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 11225 38 100.0 36 ...................................... ACCAACAACAAGGACGCGATGCTGTTGATAGTGCCG 11299 38 97.4 35 A..................................... CCTGTCAGCAACCAATATTCATCGACGCCCGTTCT 11372 38 100.0 34 ...................................... ATGGAAGGCCGACCACGATCCGATCTGGCGTCCA 11444 38 100.0 36 ...................................... CTTGCCATCGCGCCAGGCTCCTACGAGATCCGCCGA 11518 38 100.0 35 ...................................... GAGCCCGGCGAGCTCGTCCAACTCAACGCCGGCCA 11591 38 97.4 34 C..................................... TTTCATGCGCGCAGACGACACCGACGAACCAAAC 11663 38 100.0 35 ...................................... CGGATCACCATTGGGACACTGGACTTTTAGCGTCT 11736 38 97.4 33 C..................................... GTTGTGATCGACATCGACCTCCCCGATGGCCCG 11807 38 97.4 36 A..................................... GTGTGCGCCCCAGATCGGGTGTATCTCGTCGGGATT 11881 38 100.0 36 ...................................... GTCTGCACGGAGCCCGTAAATCCATCCTGTCGGCTC 11955 38 100.0 35 ...................................... ACAGCACGTGCCGCGACTGCGGCGGATCACTGCTC 12028 38 100.0 36 ...................................... CGGGTGATCTGGGGCGGTCATGAGAACAGGTCCGTG 12102 38 100.0 36 ...................................... CCTGCCAGTTGTGCCAGTGTCCGTCGGACAGGATTT 12176 38 100.0 35 ...................................... CTGCCAGTTGTGCCAGTGTCCGTCGGACAGGATTT 12249 38 100.0 34 ...................................... ATCGACGCCCGTTCTGTCAGCGATGCGACCGACG 12321 38 97.4 35 A..................................... TTTCCGAGGTTGGTGATGTGGTGCAATATGGCGCC 12394 38 100.0 35 ...................................... GCGTTGGGTGTAGCCGCATGATCCGCAGGTGATGT 12467 38 100.0 34 ...................................... CAATCTTCGGAAGAAAGATGAAGCCGATGCTGCT 12539 38 100.0 35 ...................................... CGCGGGGTGGCCGGCAGCGCGTGCGATGCGCAGCT 12612 38 100.0 35 ...................................... AAGACGCCGATCGAACAGATCATTGGGATCCTCAT 12685 38 100.0 38 ...................................... GGGGGGTAGACCGCGGGTCATGTCAGTCATCCATCTCT 12761 38 100.0 36 ...................................... CAGCCATGAATCCGGGCGCTTACTGCGATCCGCTCC 12835 38 100.0 36 ...................................... GATCAGGCCGCCGCTGAGGCTGATGCCCTCCCCCTG 12909 38 100.0 35 ...................................... AACACCTGCCCGAGCGTTGGCGACGAGCTGGTCGT 12982 38 100.0 36 ...................................... CACGGTTACCGATTCGTCGGACTGGGCGACGGTGCG 13056 38 100.0 34 ...................................... ACCTTGAGGACGATTCGTCGCCAATACAAACGTC 13128 38 100.0 35 ...................................... GACTGGATGGCGCCGGGAAAGCCGCTTAACTGGCG 13201 38 100.0 36 ...................................... GCTCGTTGACATGACCTCGGTCGCGCCAACACCACA 13275 38 100.0 34 ...................................... TCCGCCATGGCGTCATCCGTCCGTACTCGGCTTC 13347 38 97.4 35 C..................................... GACTGGCAGACCATGCAATGCATCAAACCGGGTAA 13420 38 100.0 34 ...................................... TGTATACCTGTCGGAGTCGGACGCTTACGAATCA 13492 38 97.4 36 A..................................... TGCAGTGTCGCTGGTCGCCCAGTTCTACGACGACGC 13566 38 100.0 36 ...................................... TGCAGTGTCGCTGGTCGCCCAGTTCTACGACGACGC 13640 38 100.0 37 ...................................... CGCCGCTGGATTACTGGCGAGGTGCTCCCGTCGATCC 13715 38 100.0 36 ...................................... ACCGCTACCGTGCCCCCAAGCGCATAGAGGGTTGGC 13789 38 100.0 35 ...................................... GCTGATCATGTTCTCGATCACCGTGCACAGCGGCC 13862 38 97.4 37 C..................................... ACCCAAGCATGGCGGGCCAGCCGGGCGCTGTGGCAGA 13937 38 97.4 33 C..................................... ATAGCGTTGGGCGCACCGACTTTTGCACGCCGG 14008 38 97.4 34 A..................................... ACCGCTTTGTGAGCACCGCAGCGCGGCTCACGCA 14080 38 97.4 36 ...........................C.......... AGCGATCGGCGCGGACGGCTATGGGCGATTTTGGTT 14154 38 100.0 35 ...................................... GGACATCCACTCGACCAGCTCCCCGACCGTGGGCC 14227 38 100.0 35 ...................................... ATTGGACACCGACGCCGTGGCGGCAACTGCGGCCG 14300 38 94.7 33 A.......T............................. CGATGAGATCGGCAGGCACTTGGGTACCGTGCC 14371 38 94.7 36 A.....................T............... CTCGGGGTCGTTGGGCGCCGGCGTGGCCAAGCAAGC 14445 38 86.8 34 ...A..T..........T........C......C.... GACCGTACCGCACGCACCATCGACAAGGTCGTCA 14517 38 78.9 38 A..T...G.T....G...........TT.......G.. ATGACCGGACGGGCATTGTCGTCGCTGGCGTCCTCGAC 14593 38 89.5 0 .......G.T.A.........................G | ========== ====== ====== ====== ====================================== ====================================== ================== 47 38 98.2 35 GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Left flank : ACTTCAGGCGCTTCTCCTGGCACGGCACCTTCGCGGCGATCTGACGCACTATTTCCCATATCGAACGACAGGGCGGTGAGATGGAGATACTGGTGGCCTATGACATCAGCACGGCGTCACCTGACGGGGAGCGTCGTCTTCGCGAGATAGCGAAGGTTTGCGAGGGGTACGGTTTGCGTGTCCAAAAGTCAGTCTTCGAATGCCAGCTGGAAATGCGCGAAGTCCGTCTGCTAATACATGACGTTGAGAAGGTTATCGACCCGAGGACCGATCGGGTAGCCGTCTACAGACTGCGTGAGCCGTACCGTCGCTACGTGGTGACCCGCGGGCGTGGACCAGATGTCGACTGGCGCCAACCAGTCATTTTGTGAAGGGGCGGACCTGGGTTAGACATGCGACCCGTAGTAGATCCGCCCGAGGATTTGGGCTCCGTAAGCGCAGAACGGTTCATTGATAAGTTGATGATTGTCGCGGTCGCCGAAAAATGGCTGGTCGCGAAC # Right flank : ATCAAGCTCAACAAATGGCTCCAGGTGCACACAAACGCGGATCGGGCGGTGCTCGGCACAGAAGTTTCAAAGCGGCGATCCGGCGCGGACGCGTCGAAGTAGTCGAAGTACAAATCGTCGGCCTCGCACGCGGCGGCTACCAGCGCATCGGAATGTCAACCCGCACCGGTGAATCACGCTCCTGGCAGATCGCGCTGGACGTCGAGGTCACCGCGGTCGTAACTCAGTTTTTCCAAACGAAACACTACCGGGGCTGCGCCCCAACCTGTGGAACCGTGCCAGCGGTGGGCTGCTGAGTTGGGGGCTCCGGCTGGGACGTAATCGGTGGCATGCTGATGCCACCAGAATGTGTGACCGCTGCCTGTGAGCGGTTGAGGGACCCGGGATTTGGGTCCTCGTCCCGAACCGGAGCCTGTAATGACGCTACCCCGCACTGCCGCCGATGTCTTGTCCGAGCATGTGGTGTTCGAGTTGGAGTCAATCGATCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GGCGGCGCCGGGCTTTGCTCGGCGCCGAGGATCGGAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.10,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24696-25749 **** Predicted by CRISPRDetect 2.4 *** >NZ_UPHQ01000073.1 Mycobacterium innocens strain MK13 isolate MK13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 24696 36 100.0 37 .................................... GTTGACGTTCGACGGCATCCGGGCTGAACAGGAGCAC 24769 36 100.0 36 .................................... GAGATATATGACCGGCATGGAATGCGCGGTTGTGTG 24841 36 100.0 38 .................................... TCCGGTCGTCGGGAAGCATCCCGTGTCGGGGCATGTGA 24915 36 100.0 35 .................................... GCGGTGTGCTCCAACTGGTTGAGTCGGGCCCGCTT 24986 36 100.0 37 .................................... CCGGTGGGGCCGGCCGACGACCAACTCACCCTGCGCT 25059 36 100.0 36 .................................... GATACGGTTTCCAAATGGGTCGGCGTCGGGGCCGTT 25131 36 100.0 37 .................................... GGCCTGCCCGGCCTCGGGCAAGGGGAGTTATTCGCGC 25204 36 100.0 37 .................................... TCTTATTTATCGGCCCAATAACACCAAGGGATTGCAG 25277 36 100.0 36 .................................... TTGTAGTCGTGTGCTTGCGACGGTGTATAAGTGCTT 25349 36 100.0 39 .................................... GTATCCGGACGCGATGTGGGTTCACGGCTTGCCGTCCCG 25424 36 100.0 37 .................................... ATCCAGTTCGAGGGCAAGATCCACCACTGGTCGCCGG 25497 36 100.0 39 .................................... GATGGCCGATATGACCTCTGATGTATCGACGATCTGCAG 25572 36 100.0 35 .................................... GCGGCAGCGATTGACGCATGGATATCCGACGGCGC 25643 36 97.2 35 ...................................G GTTTTGGGCAGTTCACCCTGCGGTAGCCGCCGCCG 25714 36 83.3 0 ..............AG..A........G..C..C.. | ========== ====== ====== ====== ==================================== ======================================= ================== 15 36 98.7 37 GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Left flank : GCTTGTCGGCGAGCTTCCTGAGTACATTCCCATGGTGACGAGATGACACGGCGTCGCTACTTGATGGCATACGACATCGCCGATCCTAAGCGGCTACGCCGTGTGTGCACCCTGATGAAGGATCACGGTGAGCGTCTGCAATATTCGGTGTTCCTGTGCGACCTCAGTGTCGCCGAACTAGCGGAACTCGAAGCCGCGGTGACCGCTGTGATGCATCTCGTTCACGACAGTGTCGTCCGAATCGACCTCGGCCCCACGTTCTCGCCTGTTGCGATACGACAGATCGGTCGTGGTCGCCGCATGCCTGCGGATGGACCGCAGATCGTATGAATTGCGAGCGGTGATATGACCGGCGGGATCCGAGGAGGCGCTCGTTCGCAGGTAGGACGCGTTACGGTGAATGCCACACATCATTGGCAAGCGGATAGCAGTCGCATGAATCGCGACTGCTCGCGGTGCCGTGTATCATGCCAGGTCAAGGGGCTCTAATTGACCGAGCC # Right flank : CATGCTGCGCCGAGTCTGGCGACACCGGTGCATGACGACGCGGTGCTAGCCGAGGTTGCCGCCAGGGTTCGCGACGCGGTCGGCTGACGGGCCGGCGGGAAGCAACAGCCGGGAATTGCCGAAATGCACCGAATGCGTCACCGGCTTGGTCTGCTGGCCGGTCAGCGCCGGTTCTCCAGTGCCGAGGTTGGGTGCGTAGCGAGGAAACCAGCTGCCGGCGATCAGGACACGGATACGCGAGCCGGCTTTGAACCGGTGGGCGACGGCGTCGAGCTCGACGCGGACCGTCTCCGGCGCGTCCCCGAGCCGACGGTAGCCGTCACTCACATTGCGTGATCGGCCCTTGGCGTCGACCTCGCTGACCCGGACGAAGACGTCGACGTTCGGGTTGTCAGAGGAGTGCGTCAATTCGACGACGGGGCTTCCGTAGACGTACAGATCGTGGGCAAGAGCGGCGCCGGTGAAGCAGAGCACGTCGTAGCGGCGCGCGAGCCGGCTGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCCGGTCATTTTGGCCGGACACCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1527-1192 **** Predicted by CRISPRDetect 2.4 *** >NZ_UPHQ01000094.1 Mycobacterium innocens strain MK13 isolate MK13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 1526 37 100.0 36 ..................................... CTCACCGACCTGCACGACGATGTGCCCCAGGTGTTC 1453 37 100.0 37 ..................................... GGGCGATGAGTTCGTCGCGGATCGCAGCGTAGATGGT 1379 37 97.3 36 ....................................G CCGAATCAGCCGCCTTGTCATACATCCGCTGAAACT 1306 37 100.0 36 ..................................... GTCAGGATATGCGCAGTTCGCCGCCTACGGTAAAGG 1233 37 89.2 0 .............................C...A.GT | C,GCAC [1195,1203] ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 97.3 36 GCCGCAATGGAGCCCAGGCATATTCGCCTGGGAGACC # Left flank : CGCTCGAATGTCATCCGCGCGCCGCGGCCGTAGCCCAACCGGCGGCGGGCCAGCTGATCGGCGATCTCGGTAGAGGTGACGTCCACTCCGGCGACCATGCCTTCGACCACGGCCACCAACGCCCGGCCATGGGACTCGCCCGCGGTGATCCAGCGCAACACCCGAACATCTTCCCATGGCGGTCAGTTAGGGAGGGTGTGGCCCGTAAGTGCATGCGGTGAGCGTGCAGCGCAACTGCGTATTCCGAGGTGCAGTAGCATGCCCTCAATGACCGGGCTTGCGTGAACCTGGCTCATGGCGCGGTCACCCTGCGAATCGCGCCTATCAACCGTATGGTCGGCCATCACCACAAGAGTCTCGAAACATATATTTTTGCGATGGAATGGCCATTCGATCAATCTGGGTCAGACGTACAAGCATCGACGTCGATAATGTTCTGCGGGCCGTGCGCAAGCCTGGGAGACGGCTCCGATCTGCGAGACGCCCGGGTCGGTCACGGT # Right flank : CGTGAAGTAAGCGTTTGACCTGCGATGTTGTGGATGTGACACGCGGGAGTGGTGTGGTTACAGGGCGGTCACGGCAGAGCGCTGGATGATCACAGTTTCCACACCAGTCACATCCCAGGAAGCCCTGCCGTGCCCGCTGTGCCATCATCGCCCACATTGTCCGTTGTCGATGACTCCGACCCACTGCTGGGCGAGTTGGCTGACGTCCCCGCCGCGCGCGACGGTTTGCTGGAGCTGATCGCCAAGGTGCCCGACCCGCGCAAACCACGCGGAAAACGCCACGGATTGGCCGGCGTGCTGGCGATCGCGCTGGCGGCCACACTCGCGGGTGCACGCTCGTTTGTCGCGATCGCCGAATGGGCCGCCGACGCTGCGCCGGATGTACTGGCGCTCCTCGGCGTCACCGACACGGTGCCGTGTGAGTCCACGATCCGCCGCTGCCTGCAACGCCTGGCTCCCGACGAACTGGACAAGCTGATCGGGGCGTGGATGTGGCTGCG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCGCAATGGAGCCCAGGCATATTCGCCTGGGAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.10,-14.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //