Array 1 17500-15761 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVR01000007.1 Streptomyces sp. LAM7114 Z_ctg189, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 17499 29 96.6 32 ............................C GCAGCGGAAGCCCTCACCGAGGTCTGCCGCGC 17438 28 96.6 32 .................-........... TCCTCACCGGCCACGCCGTCCAACTCGCCCAG 17378 28 96.6 32 .................-........... CCAGGGTTCGGAGCCGTGCAGGGCTTGGGCGA 17318 29 93.1 32 ...................T........C CTGTGGAGAAGCGGTTTTCTACCTGTGCAGAG 17257 29 96.6 29 ............................T GGTGCCGGTCACAGCCGCTCACCATCCGA 17199 29 93.1 32 ...........................TC GCCTGCGATGTGCCCGTCACCGCGCTCGTTGC 17138 29 96.6 32 ............................T TCCGCTCAGGGTGTCGCCCTTCTTGCCGACAT 17077 29 100.0 32 ............................. ACGCGGGCCAGTCTCCCCAGCAGACTCATGTG 17016 29 100.0 32 ............................. GTCATCCACCTGACCCGCGCGGAGATAGAAGA 16955 29 100.0 32 ............................. ACGTACGAGGTCGCCCCCGGCGACATTTACAT 16894 29 96.6 32 ............................C CCGGTTGGGTGGCCCGGCCGCCGGCGCACCCG 16833 29 100.0 32 ............................. GGCCGTCAGGCGTCCCGTATGCCTTTCGAGGT 16772 29 100.0 32 ............................. TCATGCCGCTCGTACTCCTCGTCGCCCTTGCC 16711 29 100.0 32 ............................. GTGGCGGCAGAGTCTGCGGTGTCGCCGGTCGA 16650 28 93.1 32 ........-...................C TCGTCGTGGTTGTCGTTGCACCGGCTGGAGAT 16590 29 100.0 32 ............................. CCCCGGCGGTCCGCCGGGGAGGTCGCTACCGT 16529 29 100.0 32 ............................. GTCAAGGGCGGCACCGGCCTGCGTAAGGGCGT 16468 29 100.0 31 ............................. CAGCGTGAGGCCGCCGATCTGGAAGCCCTGC 16408 29 96.6 32 ............................C CACCACTCGGTTTTGCTGATCTTCGCGCCCGA 16347 29 96.6 22 ............................C GAAGCTGCGCCGTGCTGAAACG Deletion [16297] 16296 29 96.6 32 ............................T CCGCACTACCGTCGTAGGCCGTGTCGATGTAG 16235 29 100.0 32 ............................. CAGGCGCCGGCCCCGGTAGCCCTGCGCCCGTT 16174 29 96.6 72 ............................T TCCATGCGAATGGAGCAGCCTCGTTCCTGTGTCGGCGGCGGCTGAATTCACCCGACGTCGACATTCCTGGGG 16073 28 93.1 32 ........-...................T TCGTGGGCGTAGATGCGGCAGATCGACTGCCC 16013 29 96.6 72 ............................T TCCATGCGAATGGAGCAGCCTCGTTCCTGTGTCGGCGGCGGCTGAATTCACCCGACGTCGACATTCCTGGGG 15912 28 93.1 32 ........-...................T TCGTGGGCGTAGATGCGGCGGATCGACTGCGC 15852 28 86.2 32 ...T.........-.T............T CCGGTCGGCGGTAGGGACCTCGGCGTCTACAC 15792 29 96.6 0 .........................C... | G,A,T [15764,15767,15771] ========== ====== ====== ====== ============================= ======================================================================== ================== 28 29 96.8 34 GTCGTCCCCGCCCGCGCGGGGGTCGTTCG # Left flank : CCTCCGGGCCCTAACCG # Right flank : GGATTAGCTCCTGGACGGCCTTCGGCCTGCAGATCACCGCCATTGGCCACCGCCCCGCCCGGACCTGGAGCGGCTGAACTGCGTGACTATCTTCGAGGGAAGAGCAGCCCGCTGCCCTGGCGCCCTGGCCGCGTAGGCCCTCGCCGCTCGCTGGCCCGCGATCGACGCCCACGACCACGTGAGCAAGGCGGTCGTCAGCGCGTTCGCTCGCCTGCGGTCATTCCGGCCGGTGGTTGTACCTGTCCAGCGTTGCCTTGTTTGTGGAAGCGTCCTGAAAAACAAGCTCCCATGGGCCGGTGTTCACGTCCATCTCCTTGCCGAAGCCCACCCACTTGCCCACCAGGCGGCGGCCGGTCGGTTCGGCGAGCATCTGAACCGCGCCGTGGTAACGGGCGCCCCGGTAGTAGCTCTCTTCCGCCGTCTGCTCCACCCAGGTCCCCGTGATGACGTTGCCGTCCAGGGTGAGGTCCATCGTCAGCGCCGAGTCCGAGGAACCGGGC # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:-0.21, 8:1, 9:0.52, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCCCGCGCGGGGGTCGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCGCCCGCGGGGGTAGTTCC with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-8.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.01,4.91 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 951-1344 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVR01000142.1 Streptomyces sp. LAM7114 Z_ctg468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 951 29 100.0 32 ............................. GTCACCCGGCCGCGGGCGTGCTCGAGGCGGGC 1012 29 96.6 32 ............................A GGGTCCGACGTTCACGGTTTCGTGTCCATGGC 1073 29 96.6 32 .........T................... CACAGGAGGCGATGTTCGCGCGGCTGGCGACC 1134 29 96.6 32 .....T....................... GAAAAGGAGATTCTCGTCTGGATCGACGAGGC 1195 29 100.0 32 ............................. TGGTCGGTAGCGCACGCGAGCACATCGGCCAC 1256 29 100.0 32 ............................. CAGGCCCGGGTGGAAGCCGAGCAGGCCGCCGA 1317 28 96.6 0 ......................-...... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.1 32 GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : CCGGGCGCTACGGCTGGGTCGGCGGCACCGGCACCGCAGCCCACATCATCCCGTCCACCGGCACGGTCACCATCCTGCTGAGCCAACTGGCCATGACCAGTCCCACCCCGCCCGCCCTGATGCGCGACTTCTGGCGCTACGACAGCGTCAGCTGACGGGGTCGGTGTCCTCGTTGACTTGCCCCAGAAGGAGCGGCTCCGCACGACGCTCGACATTCGCCAGCACATCCACCAGGAGAACGCCCATGCTCTTGGGACGTACCGTCTCCGAAGTGGTCGCCAATTCCTCGATCGTCCACCAGTAATGCCCATAGCGGGCCTCTTCTGTCCCGACCTGCATCGCGCTCGCCTCGTCAGAGGTGACGCGCGCGAGCCGATACTCCTCGTACTGGTCGAAACCCTGCCCATCGACGCTGAAGAGCGTCTGCCGAACCCAGACAACCGGCCCCAGCCGCTGCGGCGGCAGATCCAGCCCCGTCGCGGCCTGAAGGTAGTCCTCAA # Right flank : GAACAATCCGGCATGCGAGGGGATTTGCGGCATGGGTGAGCCGGCCCACGATCAACCGATACCGAGAGTCTTCAAGGCGGTGGACCAGTCGGTGGCGATGGCCTGCTGGGCTTGCGCGAGGGTGGTGGTACCGGCGCAGACCGCGGTGTGGAGTTTGGTCTCCACGGCGTCCTTGGGGTTGTTGGGGCCGGCACCTGCCTTATGGCCGGGCGAGGGCGGCTCCACCCACAGGTTGCGGGGGTCGTTGGGGTCGCCGCCGAGCTGCAACGAGATCAGATGGTCGTATTCGGCGTCCCGCATGGAGCCGGTGTAGCCGTACGACTTCGCGTTCAGCGCCTTCTCCTTGCCCGTCACGTACGACGACGGGCGGATGCCGGAGGTGTACCCGCCCTTGCGGCAGATCGTCGACGTCAGGTTCGCCTGCGTGACGGCCGGCGATATCGCGCCCGGCGTACACGCCGGGTCCTCCAGCGGCTGACTGTGGTCATAGCGGTAGTGAC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1900-1199 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVR01000031.1 Streptomyces sp. LAM7114 Z_ctg344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 1899 28 100.0 33 ............................ GTCGACGGGGAAGGTGTCGACGCTGCGCCAGCC 1838 28 100.0 33 ............................ GACCAACGGATTCCTCGCCGATCTCTGGATCCG 1777 28 100.0 33 ............................ GCTCGATTTTCAGCACCTGGCCCTCTTCGTGCT 1716 28 92.9 33 ........T................A.. GTACAGGTGCAGCCCGCCCGAAGGGGTCATCAC 1655 28 96.4 34 ................T........... TGCGTAACCGCCCACCTCGCGGACGCCTACCGGC 1593 28 100.0 33 ............................ GTGCAGGTACGGCGACCCGCCGTCCTTGATCAG 1532 28 96.4 33 .....T...................... GGTGACCGAGCGCGGGTTCGTCAACGCGGTTGC 1471 28 96.4 33 ...............C............ GTAGGCGGCCCCTACCTCACGCACCGGAAGCCC 1410 28 100.0 33 ............................ GTACTCGACCGACCGCACCATGTGCCAGGGGTA 1349 28 100.0 33 ............................ GACAACTGTGGTGCGCTGACGACGATGGGGGTG 1288 28 100.0 33 ............................ GATGGCGCGCGTACGGCCGGGGAACGGTCCGCT 1227 28 92.9 0 .........A................T. | A [1200] ========== ====== ====== ====== ============================ ================================== ================== 12 28 97.9 33 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : TGATCTTCGACGTGTACTGGTTGGGTCGGCCGAGCAGGTGGTTGCTGTCGTTGGCGGCCGTGACTGTGCCGGTGAGCCGTGCCGTGGTGACGGTCTTGGCGATCCCAGTGAATGCCGTGGTGGCGGTGAGCGGTGTGCTGGCGGCGGTGGAGCTTTGGGCCGCGGCCGGGCTGCTGGCGGCGGGCGTGCTCGTGCTGGCGCTACTTCCGCATCCTGCGAGGAGCAGAACGGCGGCGGCTGCGGATAGCACGGTGGCGCGGGTGTGGTGCATTGGTCCCTCTCTAGTGTGTGGCGACCCATTCGACCGGAACGGCCGCTGTGGGGGAAGTGGTGTTGCTGTTCCGTGACGCTACGGTTTGGCATAGAAGCGGCTACCGTGAGGCGCCCTTCAAGGTGATTACGGCTCCGGCCAAGGTGGTCACGAAGGCGGCCAGGCCGCGGGTTGTCACGATCACCCGGGGTGAGCCGTTGGACCAGGCCCTCATGGACGGCTCGGACCA # Right flank : GAGCGAATCGACGACCGCCGCCTGGCGATCGCCTTCGCTCTCTCCGCCGCAGGGCCCGACGACATCGTCCTCGTCGCGGGCAAGGGCAGCGAACCGCACCAGATCATCGGTGACCAGCTGCTCCCCTTCAGCGACATGGCCGTCGTACGCCAACTCGGCCACGAACTCGCCCGGTCTCAGGGGCTGTCCGGGGTTGCCGTCCTCTGACGCGAGGTCAGTACGGGTGGCGGTCCTTCTTGTCCGTCCAGGCCTGGTAGGCCTGGGCGCCGATCTCGGGGAAGATCTGCGCGACCTGGATCCTGCGCTCGCTGAGGGGCTTCTGGAAGTCCTCGTACTAAAAGGAGTCGTCGAAACCGATCTCGCGCGTGTCCTTCAGATCGCAGCAGTAGTAGACGTTGTCGATCCGCGACCAGTAGATGGCGCTCATGCACCCGGCGGCGATCGCGGCAACCACGTACACCTTCCCCCTGGCGGACGTCGAACCCGTCACTCGCTGGGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6666-6089 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVR01000031.1 Streptomyces sp. LAM7114 Z_ctg344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6665 28 100.0 33 ............................ GCTCGTGGAAGACAAGGCGAATGGCCCGGCGAT 6604 28 100.0 33 ............................ GCAGGCCCGGGTGGAAGCCGAGCAGGCCGCCGA 6543 28 96.4 33 .......T.................... GCGCCGACGCGGAACCGAGCTGGTCCAGCGGAT 6482 28 100.0 33 ............................ GGTGTATGTGGACAGTGAATCGCCGCGATCTTT 6421 28 100.0 33 ............................ GATGCGGCGCGCGGGATCACCGAGCGGGCCCTC 6360 28 100.0 33 ............................ GAACTCGGAGGGTCGGACGGACTCCGAGGGGAC 6299 28 100.0 33 ............................ GTACGCCGGGGATCGCTACTCGATGCCGCTGCG 6238 28 100.0 33 ............................ GGAGGATCTCAGCAGCTTTGCCGCCCGGCTCGA 6177 28 100.0 33 ............................ GCCTGCACCGAAGCCCTCGGTGCCGACCGTGGA 6116 28 71.4 0 ....................ATCATCTT | ========== ====== ====== ====== ============================ ================================= ================== 10 28 96.8 33 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : TGCAGCACGACTTCGTCCTGCCTGAGGTACTCCGCGTCATGAAGTACGACTCCGCTTACCACAAAGTGGCTGCCACTCGAGTCGACCGAGTCGCGCATCTCACCTGACCTGGGATACAGCGGCACGTCGATCCGCACCGGAGTCTCGGCCGGCAATCCGTTGAGAGCTTCGCGTAGTTCCCCCACTGTCAGCTCCACGGTCTCATGCCGGTAGCGCTCTACCCTCACGTCATCAGCCATGCCGCACAGGATAGAAGCAAGCGTCTTTGATCAACCAACGTTGATCACCTTGCGCCCAGCCGCCGCGTAAACAGGGTGAACGTTGCCTGATGCGGCACTAGCTGGCTATCGGGCGGCTCATCCGCTGTGACGTCCGACCGCAGCTCAGCGGCCTGTGGGTGGGGAATCAGGGTAAGCAGGTCTGCCCCATCCCCGAGCACAGGGCGGGGAAATTCAAAGAGCGTCATCAACGGGAGGCTTTCCGTCCTGGATCAGGGGGCC # Right flank : CTCCATCGCGGCCTGAAGGTCTTCCGGCGTGTGGATCTCCTGCACGGTGGTCGTCGCACGGAGGCGACGTGGCTTGTTCGGCTTCTGACGTCCCATCGGGGTGCCTTTCCTGTCGATCATTCGGTGGGTGTGGTGCCAGCGCAATCCACTCGGCGGTACGACCGGCTCGCCGGGGCCCTGCACCGCTCACCGTGGTACCGCATGCAGGAGGAGCTGACCAAGGCCATGCAGGCCGCCGGGTGAGACGGTCAGCCCGACAGTCTCACCCGTGCCCCGGACCGACATGGTTGCGGGGAGTCCGTGCCCGAAGCGTGGCGCTTCCGTCGCGGCGGAGCGGCGCCTACTTCCCGGCGGCGACCTGGTCGGCGTCGTGCTCGGCGGTCGCGTAGTCGGCGTGCATCTTTGCGATGTCCGTCTTCACCTTGCTCCGCGCCGCCGCGTCGTTGGGGCCGCCGACATCCAGGCCGTCCTGCACGAGAGTGGATACGTCGGCCTGGAGC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 18408-17709 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJVR01000031.1 Streptomyces sp. LAM7114 Z_ctg344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18407 28 96.4 33 ............A............... GACGGCGAGCTGTGACCAGCCGTTGACCCGAGG 18346 28 92.9 33 A.....T..................... GCTGTACACCGCTTACGCCGGTGGCCGCACCTG 18285 28 100.0 33 ............................ GAGGTTCGCGGCGAGCTCGGAGTCGACCTGGAT 18224 28 96.4 33 ...................A........ GCCGCACCTTCCGCCGTGGATCGGCGTAGGCGT 18163 28 100.0 33 ............................ GCGGTATCGGAAGCGTGCTACGACACAGACTCT 18102 28 100.0 33 ............................ GTCGTCAAGCCAGTTGAGGACGAACACGCCGTC 18041 28 100.0 33 ............................ GGTGGGCATCGGCGGGCCCGCAGCCGGCGGAAC 17980 28 100.0 33 ............................ GGACCCCAGCACCACGTTCAACGGCTACGGCGC 17919 28 96.4 33 .........................T.. GGTGTAGCGGTAGCCGCGCACGTAGCCCGGGAC 17858 28 96.4 33 ...........C................ GCTCAACCCGACTGCCTTCTACGCCGCCCACAA 17797 28 100.0 33 ............................ GGCCATGGCCCAGATGGGCATGGATGATGACGA 17736 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.2 33 GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Left flank : GGGCCCGCCAGGCCGAGGAACGGTCCGGCCTGAAACTCACCAGCACCCACAGCACCCCGCTCACCGCTGCCCGCGGCGAACGGCATCAGGACAAACGCCAGATCAAACACGCCCGCACCCGATTCGAAGGCACCGCGGTCGTCACCGACCACACCACCTTGCAGCAACGGATCCTCGAAGGCATTGGCCGCGGCAAGTCCTACGGCTGCGGCCTGCTCAGCCTCGCACCCCTCACCAACCCCGCAAGGTAACCCCATGCCCCAAGCCGCAGAGTGGTCCGCTTTTGATCCGCCGTCCGTGGCCCTCATTTCAGGTTCTGGCACACTTTCCGTGCTGGCGCAACGGAGCGTTACCACCCGCCATCTGGAGCAGATGTCACACGGCGGGAATGCGAGGTTCTGTGCGTATGATGCCCGCTGATGATCATGGAGCCCGTGACGCTCTGTGCCCTGGCACGGAAAGTGTGCCAGAACCTCATTTCACCCGTTGCCGAGACAGGT # Right flank : GACGGTGATGAGGATCTCCGAAAACGGCCCGTGCTGCTCTTCGTTCCCCACTCGGTTGCTACGAGCAACGAGGACTGGGGAGGACGTACCGCACCACGCGGGAGTCGCCAAGGCAGGAGGGGCGAGACTGACCGCGTCAGATTCAGACCGAGCGCGAGGCATCCGCACTGGGGCAGTCTCTATAGCTGATCGATCGGAACAGCCGCAGAGCTCGGATGAGGTTAAGTGCGGTGCATGGTGTCGGCGTGCATCGCACCGGAAGGTCGATGCCCCCGCTAAGCCGTACTGGTCACCATCCAGTGCCAAGGGTTGCCATTGACCACGGAATCGAACTCTCCGGCCACCGACCAGCCGGCCATCCATCGTCCTCCGCCATGTTTTTGCCCTGGCAGGAACACGTACACAAAGGCCCTAGGGCGGTCTTGCAGCTCGCCGTGCATTTCTCGCGGGGGTTGTACTCGCGCCCTACCATGATCATCTTGTGACGCCGCATCAGTGTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCGCAAGCGGGGGTGAGCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //