Array 1 19221-18892 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUL010000011.1 Erwinia amylovora strain O-RG-21 Ea_O-RG-21_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19220 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 19160 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 19100 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 19040 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 18980 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 18919 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : GGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCAA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30301-28684 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUL010000011.1 Erwinia amylovora strain O-RG-21 Ea_O-RG-21_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 30300 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 30239 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 30178 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 30117 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 30056 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 29995 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 29934 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 29872 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 29811 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 29750 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 29689 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 29628 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 29567 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 29506 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 29445 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 29384 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 29323 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 29261 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 29200 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 29139 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 29078 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 29017 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 28956 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 28895 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 28834 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 28773 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 28712 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.0 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : ATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 43310-41208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUL010000011.1 Erwinia amylovora strain O-RG-21 Ea_O-RG-21_contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 43309 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 43248 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 43187 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 43126 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 43065 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 43004 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 42943 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 42882 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 42821 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 42760 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 42699 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 42638 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 42577 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 42516 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 42455 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 42394 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 42333 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 42272 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 42211 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 42150 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 42089 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 42028 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 41967 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 41906 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 41845 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 41784 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 41723 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 41662 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 41601 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 41540 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 41479 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 41418 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 41357 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 41296 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 41235 28 93.1 0 ...........A........-........ | ========== ====== ====== ====== ============================= ================================ ================== 35 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //