Array 1 49405-50733 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYET01000001.1 Listeria monocytogenes strain N13-0437 NODE_1_length_749260_cov_59.6953, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 49405 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 49471 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 49536 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 49600 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 49666 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ACT [49678] 49734 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 49799 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 49864 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 49930 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 49994 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 50059 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 50124 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 50189 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 50252 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 50315 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 50381 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 50444 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 50509 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 50575 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 50640 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 50704 29 93.1 0 .......................A....C | C [50727] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CGTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 505286-508032 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYET01000002.1 Listeria monocytogenes strain N13-0437 NODE_2_length_513388_cov_66.1848, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 505286 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 505352 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 505418 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 505484 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 505550 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 505616 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 505682 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 505748 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 505814 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 505880 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 505946 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 506012 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 506079 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 506145 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 506211 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 506277 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 506343 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 506409 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 506475 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 506541 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 506607 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 506673 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 506739 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 506805 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 506871 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 506937 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 507003 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 507069 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 507135 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 507201 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 507267 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 507333 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 507399 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 507465 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 507531 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 507597 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 507663 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 507729 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 507796 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 507862 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 507928 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 507994 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [508019,508025,508028] ========== ====== ====== ====== ==================================== =============================== ================== 42 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //