Array 1 3927-3627 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOI01000012.1 Listeria monocytogenes strain NRRL B-33408 PROKKA_contig000012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3926 36 100.0 30 .................................... TTATAGAATTGAGTTGAATTTGACCCATGT 3860 36 100.0 30 .................................... TTGCTCTGTTTTCAATGATGTTTGGGAATG 3794 36 100.0 30 .................................... AATAGTAAATGTAGATGGTTCGACGGTAGA 3728 36 100.0 30 .................................... CCACTTTAAGCCCTCAGCACTAACAAACCA 3662 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : GCGAGGAAGATTTCCTGTTATTGAATAAAACAGAACTGCTGATAGAGCATTTAACTATCGAAAATCTAATTTTAAGTGACTGAGAACTATTAATAACTAAAAATGAGAACCTATATAACTTTTAGCACCATCCGTTAAAAAAGGAGCCCCCAACCATGAAAAAAACCTCCATTATTTTTATTTTTTGCGCATTCCTGTTAACTGCTTGCTCAACCACTACAAAAGAAATCCCTAGACAAACCATAGAAGCTACCGGCGCTATTGAACAAGTAGAAATGGAATCTGTTTTAATCAATAATATCAAAATAAAAACCGATAATAACGCGCCAGAACTGAGTGTGCGCTTCTACATCAGTGGAAAGTACCACGACGAAACGGGAAACAAAATAAAACTAACCGAACTAAACAAAAATGACAATATAAAAATCATTTTAACAAAAGGTTTCCCAATCCAAGAAACCTCACCAGCCCAAATAGATCCCAAATACGTACATAAAATC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 1491-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOI01000017.1 Listeria monocytogenes strain NRRL B-33408 PROKKA_contig000017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1490 36 100.0 30 .................................... TGCTCGTCTGTGCGTTGTATGCCCTTTTCA 1424 36 100.0 30 .................................... GGCGTGCCGCGGTGATAAAAGAAGTGGCCG 1358 36 100.0 30 .................................... TGCTAAAATCCTTTGTGACGTCCGCGACCG 1292 36 100.0 30 .................................... TGAATTTAGTGCCAAATTTAGATGATGAAG 1226 36 100.0 30 .................................... TATGAGTGCAGGAAATGTTGCACAGAAAAT 1160 36 100.0 30 .................................... GTTTTTAGATGGCTAAAGAGCCCAAGCGGC 1094 36 100.0 30 .................................... TTCTATGACTTTGAAGTTTTCAAACATGAT 1028 36 100.0 30 .................................... GGCGAAAATTATCCAAAGCGCTTCAAATCT 962 36 100.0 30 .................................... TTACAACATTATAAATAAAAAAAGACCTCT 896 36 100.0 30 .................................... CAAATATTAAAGGTTTTTTGTCAACTATGA 830 36 100.0 30 .................................... GGGAAAGAAGAAATTTATGTCATTGATGAA 764 36 100.0 30 .................................... CGCACATTATTACAAATCCCTTCCGCACAT 698 36 100.0 30 .................................... TGCTTTAACTGTAGCCTTTACACTACTTTT 632 36 100.0 30 .................................... AAACTCAATTGACAATAAATATACAGGTTT 566 36 100.0 30 .................................... AGCATCTATGCACCAGATAACCAACGCGAT 500 36 100.0 30 .................................... ACATACGCATACAGGTTTATGTGTGGAGGC 434 36 100.0 30 .................................... CGCTTGATGTTCCCCCTCTGAAATATCAGA 368 36 97.2 30 ...................................T TTTTAACGACTTTCGTTCAGGTCGAATGTT 302 36 100.0 30 .................................... AGATTATCGATTCTTAGAACATACACACCT 236 36 100.0 30 .................................... TAATGTCATTAGATTTTTTAGATAGTGTTA 170 36 100.0 30 .................................... TCGCTTATAATCACATGATGATATAGCAGG 104 36 100.0 30 .................................... TTATAGAATTGAGTTGAATTTGACCCATGT 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.9 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCAACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCATATTTGAGAAATTAATTGAAATAGTACAAGTTTATAAATATCTATCTAAGAAAAAATTGTTAGTACTTATTAATGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATTTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGACAGATAAAAGGCTCTCCACATGTTACTTTAGATTCTGATTATTTTTTACACATGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAACCCATAAAAAAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTCGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 21044-21593 **** Predicted by CRISPRDetect 2.4 *** >NZ_MKOI01000028.1 Listeria monocytogenes strain NRRL B-33408 PROKKA_contig000028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 21044 29 100.0 38 ............................. GAAAAAAACGGCGAATCTGTAAGTATATGGGTAGATGC 21111 29 100.0 37 ............................. AGATACAATTCTTTGTTTGAGGCAAATTCTCTATTTT 21177 29 100.0 36 ............................. TTCGTAGTTTTGAACTCGCAATAACCGCTTTCGTAT 21242 29 100.0 37 ............................. CGGGTCAATGATGGTAATTTGGTCGTTGTCGTCTTCT 21308 29 100.0 35 ............................. TCTGTTTAAAGATAAATGCTGTAGAATGCTTCATT 21372 29 96.6 35 ..................A.......... GTAGTAGCTATTAAAGATAAGGTTTGGAAGGAAGG 21436 29 93.1 35 ..........T...T.............. TATTTTGAAATATCTAAAGCTATCTCACTGTTTAG 21500 29 96.6 36 ..............T.............. TGTAGTCATCAACTTGTTCAAAGTATTTCACTATAG 21565 29 72.4 0 T.....A.......TCA.AG...A..... | ========== ====== ====== ====== ============================= ====================================== ================== 9 29 95.4 36 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GCGTCCGTGCCACTACTTCAGCTGATATTTTACTTAAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGATTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGTGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTTGAGTAGCGCAAAAAACACCGGGAATCGACAGAAAGTTGTAAGTGGTTGGAAGAAGGGAAGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TCCCTTCATATACACCATCCATCAAAACCAAAAAAAGCGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATTATTAAACTCTTTCAAAACATCCGCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATGAAATTATATGCTTCCACTTCTCCCAAATTCTCGAAATCGGTAAGAGTAGCTTCTGTTTCTTTCAAGTTTTCATTAAATTTGCCGTAGCCCATGCTGATGATTGAACTTAGTTTTTCGTTGTCATGTCCGCCGCGTAAAAATAATGTATATTCTTGTTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGTTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATGGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTTTTGTTTTTCACTAGTTTTA # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //