Array 1 41269-43405 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRL010000012.1 Listeria weihenstephanensis strain FSL L7-1523 NODE_12_length_108126_cov_50.746430, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 41269 30 100.0 35 .............................. CGTGTTTGCTGAAGCTTTTTGCTCCCCGCTTAGAT 41334 30 100.0 36 .............................. ACAAGACTAGTACCAATCAGCTTGTTGGGTAACAGC 41400 30 100.0 35 .............................. TTATTTTGGTTGCATTAGCTGTCGTTTTCTTATTC 41465 30 100.0 37 .............................. ATGTGTCAAAACCTTGTTCACATTTAATTATAAAAAA 41532 30 100.0 38 .............................. TTATATCTATATTAAGTTATTATTAAGAAGTACTAAAG 41600 30 100.0 37 .............................. AAAGAAGCAATGGGACATCTCAATAAAATAAGTATTA 41667 30 100.0 36 .............................. TTGCACACCGTTCCGAAGCAAACACTGCTAGACGAA 41733 30 100.0 35 .............................. CTAATTAAACCCTTGAACCACAACACTTTATTACA 41798 30 100.0 36 .............................. AGTTCAGCCTGTGCATGACCTCGGTGAGTGAATATA 41864 30 100.0 36 .............................. ACATATGACAAATTAGTACAGCAGATCGACAATATT 41930 30 100.0 37 .............................. ATTTTCATTAATAAATCAGAAGATGGAACCTATCAGC 41997 30 100.0 37 .............................. CGATTAGAGGCTGTACAGGGTGACTACGGTTCATTTA 42064 30 100.0 34 .............................. ACATACGCAACTGTGATTTCATTCAGCAGCGCAT 42128 30 100.0 35 .............................. ATTTTCCGATGCCCTAAGTTGAGATTCAGGTGTCT 42193 30 100.0 35 .............................. CTTTTCAGCTATTTGTGAATCGTTATAATGATTCA 42258 30 100.0 36 .............................. AACGATACGGAACAACTGTTAAGCAGGTGCAATCTT 42324 30 100.0 36 .............................. ATAGTACCAGTCCTACTATTAGACCCAAGGCACCTA 42390 30 100.0 36 .............................. CTTGTTGATACAGGACGATTGCGCCAAAGCGTTACA 42456 30 100.0 35 .............................. TCAGATTTCCGCCTCCTCATCAATAGACCAGCCCG 42521 30 100.0 37 .............................. AAGCGAAACAATTAAACCAAGTCTTGAAACAGGAAGG 42588 30 100.0 35 .............................. GCATGAGAAAAATCGTCACTATTTTCTCCTTGTGT 42653 30 100.0 35 .............................. TTGTTTACCTTACCTACAACGTCCTTATCGGCCCA 42718 30 100.0 36 .............................. ACGACTGCACATTAGCAAACGAAAACGTATCCCTTT 42784 30 100.0 36 .............................. AAATAAGGAGAGTGAAATATAATGACTCAATGGCAC 42850 30 100.0 37 .............................. CGCTGTCCCACGCATTAAATCAATCATTCTATTAAAC 42917 30 100.0 36 .............................. TTAGTCGAACTCAAATTTGATGCCTGCTTCGACGCG 42983 30 100.0 34 .............................. TGGTTTAAAACGATTCGTTCGGTTTCGGATCTAG 43047 30 100.0 36 .............................. AATGTCCCTCCGACTTGGATGTCGAAATATGGTAAA 43113 30 100.0 36 .............................. TATTACACCGTTAAGCATGTGCCAATTCCTCCTTTT 43179 30 100.0 35 .............................. AACGGGGCGGAGGGGATATACTGACCTTGACGAGC 43244 30 100.0 37 .............................. AGAGCATGACATGATCGATGAACAAACGAAATCAGGG 43311 30 100.0 35 .............................. CAATCTTCTAGTTGTCTTTCCATGTCTATTACATC 43376 30 83.3 0 ...................A..T..G..CA | ========== ====== ====== ====== ============================== ====================================== ================== 33 30 99.5 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATTTGGTGGTGAATAAAAAATGTATATAATCTTGATTTACGATATTGCACAGGATAACGGTGGCGCAAAAGTATCGCGAAATATCTTTAAAATTTGTAAAAAATATTTAACGCATGTTCAAAAATCCGTTTTTGAAGGAGAAATTACACCACCGTTATTAGTGAAATTACGGATGGAGCTGGATAAATATATTCGTGATGAGGAAGACTCTGTTATTGTGTTCTCAAGCCGGCAGGAAAGATGGTTAGAGAAGGAGTTTTGGGGAGTTCCCGATGAGAAGACATCCAATTTTTTCTGATGTATGAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTATGGGGGATCGACAGATTTTGATAATCGATTGCGCTGGAAGGGATTTCGGGTTTTTGATGGTGTAGGGGGAGCTGGAAAGGTAGAGAAAAAACAATTTTTGTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGGACGAAATAGGACGG # Right flank : AGGACAGGTACAAAAATTGCTGTGCGAACAGTTTTATCCAATTAAAATGGTGCAACACAAAAAAACGCCACCGCCTAATCAAAAAGCAGTGGCGTTTTAAATATTTCACACATATCAATCAAAAATCCTCGTATTAACCAACGCTTGAAAATACCCATCCATCTCTTCGGCGGGCGTGGTCTGCTCTCTGCTCACCCACCACAAAGCCAAACCGGAAATCGCGTGGCCGAAAATCTCAGCGATGATTTCTTTCGGAACATCCGTATTCTCCCCATCTTTCAATAACTTACTCAAATCAGCAAGCATCAAGTTATTCATCCGCTTCCCAAAGTCATTTCGAAACTGTTCGCTAGCGTGAAAGCATTCAAATATCGTCAATACCAGCTGCCAATCCCAAGCTTCGAACATACACATGAATGGCTGGCACAATCTTTCCCTCGGCGTAAAGCGATCAAAGCCTGTCTGCATCTTATCCACACAGTATGTCAAAAGGTGATACT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 75896-76830 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRL010000002.1 Listeria weihenstephanensis strain FSL L7-1523 NODE_2_length_219925_cov_57.242222, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 75896 29 100.0 35 ............................. TTCGTCGGGTCCGTAAAATTAATCACGGGATCACT 75960 29 100.0 36 ............................. ACCTGTGTTAGGCGTTGCGCCATTATCCGCATGTCC 76025 29 100.0 36 ............................. TGTCTAGTGAGCGTAAAATCATACAACACCTTTTAA 76090 29 100.0 36 ............................. GTTTTAATCGTATCGGTAGTCGGCATCCTAGCAGTT 76155 29 100.0 37 ............................. CATGGGGGATAGCATCATTCTTTTTAATATGCTTCTT 76221 29 100.0 34 ............................. GAATTAGATGAAACTTTTGAACGAGAGGGGTTAC 76284 29 100.0 37 ............................. TCTTTTAGCGAATTCCAGTAATTCCGATTCGCTTGTG 76350 29 100.0 36 ............................. GAACACACGTTAATTATTCACGGTGCTATAGGAGAA 76415 29 100.0 36 ............................. AGGTAAACCTAGAAGGAAATAGGTTGTCGATTGTGT 76480 29 100.0 34 ............................. GTTTTAGAAAGTGTCACAAAAGCTTTTTGCGGGG 76543 29 100.0 36 ............................. CTAGCTCCTTCGTCCTCTTCAAATTTAGCTAATAGC 76608 29 100.0 36 ............................. TGTCTTTACGAATCGGTGAAAATTTCTTTCTAGCAA 76673 29 100.0 34 ............................. TTTAAAAACACTTCTCAAGATACGGTGCCTCTTC 76736 29 96.6 37 ..................A.......... CCGACCTGCAGGACTAGCTGAAGGCCGTCTCAATAGG 76802 29 82.8 0 T...........C...A......A....A | ========== ====== ====== ====== ============================= ===================================== ================== 15 29 98.6 36 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GACAAAGTAGCCGTTGCCAAAATGCAACCAGAAATGAATCTAGGAACACCATCTATCCTTTTGTATGGAGAGAATCTCGACGCCATGTACGAAGATTTTAAAGCAAAAGGCATCACAGTTGGCGATCTAATCGACGTCCCAAATATGGGCCGCGTCTTCAACTTTGCTGATAATGAAAACAACTATTTTGCGATCCTTCAAAAATAACATCCAAATAAGCCTAGCTGCTCATTTTTCATTAACGAGCAACTAGGTTTATTTTATTGGCATCCCCTATAAAATACAAAGAAGTTATTCCATCATATAGGAAATCTGTCGACCACCAGTAACGCAAAAAAGTGGGGAGATCGACAGATTTTGATAAACGATTGCCCTGGAAGGGATTTGGTGTTTTTGATGGGATGGAGGAAGTGGAGTAGGTAGGGAAAAAACAATTTTTTCTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAGGGACGAAATGGAACGG # Right flank : ATCCACTGCCGACGTAAATGCCCCTATGCCTTGATCATTAATCTCCACACAAAAAAGCCCCGTGAAATCAACGAATGATTTTACGGGGCTTTCACATTTATAATTATTTAGAAGTTGATGTTTCAGTTGAACTTGACGCAGATCCATCATATTGCGTGAATGCATCTTTCAAGTCTTTATCATCGATTTTAACGTCTGCTTTTTTGTACAGTTTTTGTAGTGCAGCAGTTTTTGCTTCAGCAGTTACTTTCGATGCCAAGTAGTCTTTCTTCACTTGTGCTTTATCTTTCTCGAAAGTAGTTTTTGTTGGGTGGTCTAGCATCTTGATGATGTGGTAACCAGCGTCTGTTTTAGTAACTGGGCTGATGTCACCTTTGTTTTTCAAAGCGTAAGCAGCTTTTTCGAATTGTGGTAACATTTTACCAGGACCGAATGGAGCTAATTTACCGCCTTCTGTAGCAGAAGCTGTATCAGTTGAGTTAGCTTTTGCTAATTCTTCA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 153898-155912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRL010000004.1 Listeria weihenstephanensis strain FSL L7-1523 NODE_4_length_191720_cov_63.032075, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 153898 36 100.0 30 .................................... TCATTATAGAAGAACAAGTCGATGCGCTCA 153964 36 100.0 30 .................................... TACCTCTGCCAATAATACCTTAGTACTATC 154030 36 100.0 30 .................................... AGTGTAAGCACGTTGTTGTACCCGCCTGTA 154096 36 100.0 30 .................................... ATGAACATTATATTCATTAATACAGCTCGC 154162 36 100.0 30 .................................... TTGGGGTATCTGAGACATTATATCGGTGCG 154228 36 100.0 29 .................................... TCCGATTTCAGTTTTAATAGCACTGATAA 154293 36 100.0 30 .................................... CACCAGTGACGGCCGTAACCAGCCCATCCC 154359 36 100.0 30 .................................... TGGGCATCTCCTGATTGCAAGCACTTTTCA 154425 36 100.0 30 .................................... TGCTAGTAAATATGATGTGAGCATCTGCTC 154491 36 100.0 30 .................................... TCACTCCTACAACAGGAGGCGAACATAGAA 154557 36 100.0 30 .................................... GTAATATTAGGGTGTGAATGCACTCAAAAA 154623 36 100.0 30 .................................... TATTGCTACGACTTCCATATTTCCATTCGC 154689 36 100.0 30 .................................... GCATGAGTCTATTTTATTGTCTTGAAAATA 154755 36 100.0 30 .................................... GTGGGGGCTGCTTGCTGGATCGCTTTTTTC 154821 36 100.0 30 .................................... GTATTGAACTTTTGCTCAACAAAATAATTT 154887 36 100.0 30 .................................... TCGCCATATAGTACTTTATCTTTTAGAATG 154953 36 100.0 30 .................................... TCACGCAGCGGATTCCGTTTCTGCGCCATA 155019 36 100.0 30 .................................... TAAACTTTGTTGCAAGGCGGCGGATGTGAT 155085 36 100.0 30 .................................... TCTTGATGCGGGAATAGCTCAATCATGCTT 155151 36 100.0 30 .................................... TGTTTTGTCATTATGTGACTCCTTCTATAT 155217 36 100.0 30 .................................... GTATCGACAAAAGTATGTGTGTATTTGTAG 155283 36 100.0 30 .................................... TGCCCTAGGTGAGCTTCTGCCGCGGCTAAT 155349 36 100.0 30 .................................... AGACCTGCCACAGACGTTTTAGCAGCATTT 155415 36 100.0 30 .................................... GGCACGACTGAGAATAATGGACAAGTAAGA 155481 36 100.0 30 .................................... GTGTGATATATTTTCATTTTTGGTTCCTCC 155547 36 100.0 30 .................................... ACAGCGTTTAGGAAGGCGTTTTTAAGATTA 155613 36 100.0 30 .................................... TATAAGCTACAATCAATTTAAAACTTCTTT 155679 36 100.0 30 .................................... ATATAGAAGAAAAAGAATGTCCTTTTCTTA 155745 36 100.0 30 .................................... ATAGCTTTGGTGTCATGTGCATATCTATCG 155811 36 100.0 30 .................................... TCTGCGCGTTGGTTGTGTCGTGATTGCTTC 155877 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 100.0 30 GTTTTACAGTAGCTAAAATTCTGAGAGTACTAAAAC # Left flank : GAAATCCTCGATTGGAGAAATATCCCGGAACATTTCACGTAATCCCTCATCCAAAAACCATTGGTAGGACTGTGATTGAATCTCGATTAAGTTTGGTAATTCCAATACTTCACTAATACGAGCGAAACTTCTACGTTGGCGATGTCTTCCGTACTGAACTAGTTGACCTGACAACTCATTCACCCTCTCAAATAAACTAAATTTATTAAGCACATTGCAGCAAAAATAGTACAATGGAACTTGGCAAAAATACCTAAAAAAGACAAAAAGAAAGCGGGTTCCTCAAAGAAAACCACTATTTTCTTGCTATGTGAACCAAACAGGCTAAAACTGCAATTCTTCAATACTCGCCGTTAAATATAGCGATATCGATTCTTTTGGCATCTTACTATAATAGCATAGTGAAAAGATGGAGTCAACGATTAGGACTCCATCTTTTCTATGCTATAAAATTCTGAGAATACTAAAACAAAAAGGGTTAGGTGGCGTACAGTCATTTG # Right flank : CCTCAAATCACACTAAGGTTCCTAGTAAAAACTACTGCTCCTTCATTATAACATAGGCAACAACATCCTGCTATTACTCACTATACAGGAATTCATACTCCAATTGTGTATACGTATCAATCATCCCAGCCTCAAAATCATGATAATGAAACAGCTCATTTATAATCTTAATCAAGACCAGCTCCCGTAGAGACATTTGAATACTTTGTTTTTTATTTGTAAACAGATATGGTGCCACTGTCTTCAAGTAGTTCATAAAATCAACATAGCTCAGCACAGACATGTCAGGATAATTATTACACACCCGCTCATACAGCACTTCACTTTCAACAAGCGCATGGACTTCCCGCCCCGCCACTAAAATATTCTCAATATACCGCTCACTCACATAGACATAGCCAATCTGACTGGGAAATATAATACTAAAAAAATGCGGATGTCTCTCTGTTAAAATCTCTATTTGCCTCATAATCTTTTCGTATTCATCATAATGTAACGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTACAGTAGCTAAAATTCTGAGAGTACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.30,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 22073-23143 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRL010000019.1 Listeria weihenstephanensis strain FSL L7-1523 NODE_19_length_73096_cov_48.919213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================================================================= ================== 22073 30 100.0 35 .............................. GCAATTGCCGCAATTGCGGTGGTAGGAGGTACAGT 22138 30 100.0 36 .............................. ATTATTACCTCAACTTCAGGGCTTTCTTTTTCATTT 22204 30 100.0 35 .............................. GAAGGTGGCTTGCGTAACCAGTATTACAAAGATTT 22269 30 100.0 36 .............................. ATGTTTAAAACTTTGTAATTCGTTTGCAAATTCCGC 22335 30 100.0 35 .............................. ATCTGAGCCGATTGTGCTTGTATCAAGCGATTGAA 22400 30 100.0 36 .............................. ACTGTTGTTCTGCAATCTCGGCACTACGCAATTTCG 22466 30 100.0 37 .............................. CACTTCCATCCACGCCATATTCCAACGCATCAATCAA 22533 30 100.0 35 .............................. ACATAAATTAATTCTATCCACTGAAATCCTTCTTG 22598 30 100.0 36 .............................. CTCGTTCCATTCCAGTAAGGTGTAATGCTTATCTCC 22664 30 100.0 36 .............................. GAATACATCTTATACTGGAATTCACTAGCCATCTTG 22730 30 100.0 36 .............................. TCTTTATCTGTAAAACGGGAAAGGAGATAACCCCTT 22796 30 100.0 35 .............................. CGAGAAGATACAAATTAACATCATTATTAGATTTT 22861 30 100.0 36 .............................. CTTTTAACTCTTTACAGTACGTTAATTAAAAATAGC 22927 30 100.0 35 .............................. GTCATTAAGTTTTTCGGATTGTTATTCTCTCCCGT 22992 29 90.0 93 ...............G....-...T..... AAGCCGTCTCAAATAAATAACATTAATCGCGATTTATGCCTAAAAACCACTAAAAATACAAAACTCCAGGCCCAAATCAATTTCTTTAGGTTG 23114 30 70.0 0 CG.....A.CC....T....T...C..T.. | ========== ====== ====== ====== ============================== ============================================================================================= ================== 16 30 97.5 40 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : ACCTCGTTGAAGTTCCAGATTCCACAAAAATTTGGGATGCCGACATCGTACTCATCGCGATAGGATTCGCTGGTGCCACGCCATCCGTTTTTGAAAATTTCAAAGTAGGCAAAACAAAACGCCACACGATTGAAGCCGCGAAAGGTTTTTACCGTACAGATGTAGAAGGAATTTTCGCATGTGGAGATGCAAGATACGGCCAAAGCTTAGTTGTGACAGCGATTAACGAAGGACGAGAAGCCGCACGAGAAGTGGATTTCTATCTCATGGGCGAGACGTTTTTACCATAATAACAAAGAAGGCTCAAAAATCTGTCGACCTCCAGTAGTGTAAAAACTACAGGGCATCGACAGATTTTCTTTAATGACTGGTATGACAAGGTTTAGGTGGCTTTTAAAAGAACTGAATGTAAGGTTAGGTAGGTGAAAAAGCCAGTTTTGCTATCGGTCGACAGAAATGGGCTCTTGAGGTATTATGGGAGTAAGGCTGAAATAGCACGG # Right flank : TGAAGGAGCCGTAAAATATAGGCAATTGAACAACAGACTTATTCCAAAAGTCATCGAATCAGGCATCAATCTATAAAGTGAAAACGCAGTTGAAGGTGGGATCGACATGAAAAAAGGGCCAACAGCATGAACAGATCTATTTACAATGAGTATTTATAAAATAGCACTATTTTCCTTGGCGATCGTATCTTGTATTATCTTTCTATTTAAAAGGAAAAAAGGCTAATCCGCAAAAGTAATAAACCTGTAAAAATATATCTAAACTATAGCAATCACTCCTTAATAACTGGAAATTCGATGTCCAAGTTAAAAATATAGAGTCAAATTGCTATTTTTTTATGCAAAAGAATAACCCATTTCTTCCTTCAAATTAAAAAACAGATAAACTATAAAAAATCTGTCGACCGCCAGTAGCGTAAAAACTACAGGCGATCGACAGATTTTGTTTGTTGACTGATATTACTGAGGTTAGAAGCATTTGTAGGAATTTATTTGTGAAG # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.31, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 23729-24977 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRL010000019.1 Listeria weihenstephanensis strain FSL L7-1523 NODE_19_length_73096_cov_48.919213, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 23729 29 100.0 35 ............................. ATTGTATCACCTCGACTTAATTTAGTTATGGCATC 23793 29 100.0 36 ............................. CTTTTTATTAGTCCTTCATAGCTTGGTTCTTCGTTT 23858 29 100.0 35 ............................. ATTTTAGACGAAGGAATAGTGACGTACCGTGCAGA 23922 29 100.0 36 ............................. ATAAAAAAAGAGCCGTATTGGCCCTATATGATTAAC 23987 29 100.0 34 ............................. ATCGAAAGCTTCGCCGCAACGATTGAACAATTAT 24050 29 100.0 35 ............................. ACATTTAGCTCATTAACGCTATTTGTATTATTATC 24114 29 100.0 36 ............................. CACATCTAAGAATGAACCTTCTGTACCTGCAACACA 24179 29 100.0 35 ............................. AAACAGGCAAGAAGAAAAAGAAAACAATTTCGTAT 24243 29 100.0 36 ............................. ATGGAAGCAACTCTTACACAGTCTTGGTTAAGTCCT 24308 29 100.0 34 ............................. CTAGTATCACCAGCTACAACTAAATCCTTCTCAA 24371 29 100.0 35 ............................. TTTTTTAGAGTTAATGGGATTGTCGCTGTATTAAA 24435 29 100.0 35 ............................. ATGATCCTCTTTCACACGTACTAACTCTTCCATGC 24499 29 100.0 34 ............................. TTGAAAGGTAACCATTTGAAGTTGATCATACTCA 24562 29 100.0 37 ............................. GTTACATTTTCTTCATTATTAAATTTTGTCATTTTTA 24628 29 100.0 36 ............................. CCATCATAGCTTCTTTATCCGCTTCTTCTTCCCTGG 24693 29 100.0 34 ............................. AGCAAACAATTTTGCTGAGCGTTTTTTAGTACCG 24756 29 100.0 35 ............................. TAACTTCGGACGATGCTTGCGCTTCTTCCCAATGT 24820 29 100.0 35 ............................. CGCTTTTGCTAGATTTTCTTGTCGAAACGCATTAA 24884 29 100.0 36 ............................. CTATATCTTTATTATTTGAAACTGTAATTTGAATCA 24949 29 96.6 0 .......................A..... | ========== ====== ====== ====== ============================= ===================================== ================== 20 29 99.8 35 GTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : CAGTTGAAGGTGGGATCGACATGAAAAAAGGGCCAACAGCATGAACAGATCTATTTACAATGAGTATTTATAAAATAGCACTATTTTCCTTGGCGATCGTATCTTGTATTATCTTTCTATTTAAAAGGAAAAAAGGCTAATCCGCAAAAGTAATAAACCTGTAAAAATATATCTAAACTATAGCAATCACTCCTTAATAACTGGAAATTCGATGTCCAAGTTAAAAATATAGAGTCAAATTGCTATTTTTTTATGCAAAAGAATAACCCATTTCTTCCTTCAAATTAAAAAACAGATAAACTATAAAAAATCTGTCGACCGCCAGTAGCGTAAAAACTACAGGCGATCGACAGATTTTGTTTGTTGACTGATATTACTGAGGTTAGAAGCATTTGTAGGAATTTATTTGTGAAGCTGACGATTAAAAATCATGATTTTGTTGTCGGTCGACAGATTGGGGGCTTTGAGGTATGATGGGAGTAAGGCTGAAATGGGTACGG # Right flank : TTCCATAACCACAATTTCATCTTGAGACATGAGCTCCTATTTCATCCAAGCACCATGAAATAAATCCACCCCTAACCCCGCGCCACAACCCCAACACTCTCCAAAACCAACCCAACCAACTGCCCATTCTCAAACTGCGTATCCGCCAGTCCAACTTCCAGCCCTAACTCCAAAATCATCCGCGCCAAATAATTCCGCGCAAACTGCTCATGCGTGAATTCCGCGCCAAGCAACAACCCAATCCGCAAAAATTCCCCAGAAATAATCTCCACAAATCCGCTTTCCATCCGACTCCACTCAATTATCTGAAACAACTCCCGATTATTCTGCACCATCTCAACAACCAGTCGAACCACATTTTCCCGTAATAACTTCTCCTGATCGAATCTAACCGAAAACTCTCGTAACTTCCGCAAAATCTGCACCTCAATAATCTGCGAAATCCACTCGTGATGCCGATAAAAAGTAGCACGAGATACACCAGCCTCTGCACATAAATC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //