Array 1 926659-927906 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032816.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUC-046 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 926659 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 926720 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 926781 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 926842 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 926903 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 926964 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 927025 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 927086 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 927147 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 927208 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 927269 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 927330 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 927391 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 927452 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 927513 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 927574 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 927635 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 927696 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 927757 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 927818 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 927879 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 944669-947076 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032816.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUC-046 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 944669 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 944730 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 944791 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 944852 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 944913 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 944974 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 945035 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 945096 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 945157 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 945218 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 945279 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 945340 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 945401 28 96.6 32 ....................-........ GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 945461 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 945522 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 945583 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 945644 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 945705 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 945766 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 945827 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 945888 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 945949 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 946010 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 946071 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 946132 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 946193 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 946254 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 946315 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 946376 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 946437 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 946498 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 946559 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 946620 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 946681 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 946742 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 946803 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 946864 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 946925 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 946986 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 947047 29 96.6 0 ............T................ | A [947074] ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //