Array 1 327695-328191 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOZJ010000002.1 Streptococcus mutans strain 1001270H_150608_B10 NODE_2_length_351251_cov_45.2196, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 327695 36 100.0 30 .................................... TGTGCTAGAGCGTCACTAAGCGTTTTCCCG 327761 36 100.0 30 .................................... CAGATTACGTTAAAGCTGACGGAGACGCAG 327827 36 100.0 30 .................................... AATTCGGGTGGTAAATGGTACAAGACGCTT 327893 36 100.0 29 .................................... CAACAAGTTCAGCGTAAGTGGATTTGTTC 327958 36 100.0 30 .................................... AATTCCTTTGATTACTTTCGAGGCAATGAA 328024 36 100.0 30 .................................... AAAATCAGACGCAGAGTCACGCAGACAATC 328090 36 100.0 30 .................................... TATCCGCTTCGTCAGTGTTTGCAGATGAAA 328156 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TATTAAAGAATATGGATGATTACTTAACTTATCCATCATTTATTTTAGCATGCCAAAAATTAGAAAGGTTATGTATGAAGTTTCCTTATTTTCAAGTAATAATTTTTCCATCAAATGAAGGTTATTTATATGCTAGACAAAATAATATTGAGTATGTCAATATTATTTCAGATTATGTAGCACATTATTATCAATTTGATTTTTTATTTAATAGATTTATTGAGCAATACCCTACAAATCAACTTCCAACGAAAGCTGACTTTTTATCTTCGATCCAAAAAATTAGTAGTTATTTGTTTAGTAAAGAAATAGAATATGTGAGCCTCTCAAATAAAGATTTAGTTACCATTAAAATTTTAAATAATCTTTATCAATATGATAAAAAAATAAACTATCCTATTCTAGATTCAAGTCCTCTCGAAATTAAATTTTTAAGAGATAACGACTGATTTTATGGTATAATCATGTTGAAGTACAAAAACCAAGAATGACGATTTGAG # Right flank : CAAATCATAGTCGATATCGACACACTACATGGTTTTAGAGCCATGTTAGTTACTGATTTACTAAAACGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAACAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAATAAGAGCAATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 2573-1421 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADOZJ010000012.1 Streptococcus mutans strain 1001270H_150608_B10 NODE_12_length_23717_cov_48.4163, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2572 32 100.0 34 ................................ TGCTTGTGCTTGCGCTACGGAACCGCCAAATCTA 2506 32 100.0 33 ................................ AATCAAGGAATTCAATAAGTTTTTGAAATTTTT 2441 32 100.0 32 ................................ CCTATCCACGCAAGCTTCAAGACAGCAAAAAT 2377 32 100.0 33 ................................ TTCTGAAAGCAAGTCTAAATCAGCAAACGAAAA 2312 32 100.0 33 ................................ TATTCTATTGAAGATATCGAGGAAATAGTCGAG 2247 32 100.0 34 ................................ CTTATCGTTGGTGTTATTTGGTTAATTGAAGAAC 2181 32 100.0 36 ................................ AATAACGCTATCAATTTCGTTCATCAAAGTTCTCCT 2113 32 100.0 33 ................................ TGCATGATAAAAGCAATGAAAAGAAATATAAAG 2048 32 100.0 34 ................................ ATCAATCTGTTGTTTAATTTCACTCATTTTAATA 1982 32 100.0 35 ................................ ACTGAATAGTTCAGAAGCCAATTCTGTCGTGACTA 1915 32 100.0 35 ................................ ATAAATTGGATATAATTGAATTCCTTGAAATTGTC 1848 32 100.0 34 ................................ TTCTGACTAGTTGTATAATTATCAAAAAAGAGCT 1782 32 100.0 33 ................................ ACGCGGGTTCCGGGCTTTTTTAAAAGAGACCGG 1717 32 100.0 36 ................................ AAAACGATATTGGAACAACAATTACGACTCCAACAG 1649 32 100.0 34 ................................ TTGGATGATCCGTAATGAAAAAGGAAATGAGAGA 1583 32 100.0 33 ................................ AATTATGAAAGCTCAGTATGGACAACTTGATAA 1518 32 100.0 34 ................................ TAGAGGAGAAGCAGAAAAATACGTCCAAGAATAC 1452 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 18 32 100.0 34 GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Left flank : TAAAGCTATTCGTGGAGAATTAGAATCTTATCCACCATTCTTAATCTAGGAGCAAATTTATGATGGTTTTAGTGACTTATGATGTCAATACGGAGACTGTAGCAGGAAGGAAACGACTACGACATGTCGCAAAACTCTGTGTTGATTATGGTCAGCGTGTGCAACATTCGGTTTTTGAGTGTTCAGTGACACCAGCCGAATTTGTAGAGATTAAAAATGAACTCTCAACAATCATTGACCAAGAATCAGACAGCATCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGGGTAGAAACGATGGGCCGAGATGACAGTTATGACCCCGATGTGGGGATACTGCTTTTATAAAAATTTGTGTGCGAATCTGGGTTGCACATCAAAACCAGAGACATTCGCGCACAAAACCAGAACTATAGTGATAAAAATTCAGTTTTTATTGAGCCAATTGGTTTAATAAATTCTCGATTTTAGTCACAAACGGTGCAACTACGCGCC # Right flank : TTCAAAAAATCCTGAAATAAACACTTCTGGTTTTTGTCGCACCCTTTAAAGGTTGGGTTTGTTTTTTAGTATAATAAAAGATAATAAAGGTGGAGAATTTTTTATAAAAATGTCTGGCACTGATTTTAACAAAGGAAAGAGTTCGTCCATGAAAGCAACATACAACATTGATAATCCCAATTTACCTTATCAGACCAACCTTGAACTTTGGCAGACAAGTTTTGGTCTTTCAGCAGGTGGATGGCTTAACGCCATCAGCTTATATGGAAGAATTGGCTGAGAAGCAGGCGCATGGAGATTATTCTTATGAATAGGTCTATGAGGGAATCATTGATTATCACAAATCAACGGATGACAGCACGGCTGAGGCTGATTTGGTTTCCTTGCGTATTGCATAGCATCGGGTTTAGCTTTAGTCCAGCTATCTTGCTGACAATTTGGTGTGAACTGTTTCAGAATATTTTTGGTTGTTCCATTCTCATTGGTTAGTTTCGTCAAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //