Array 1 328122-331755 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCK01000001.1 Aggregatibacter kilianii strain PN_755 NODE_1_length_432154_cov_28.0141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 328122 32 100.0 35 ................................ TTGTATACTCTGCACTGGTCGAACGACGTCCCAGT 328189 32 100.0 34 ................................ AGGCGTTCCAACAACCAACCGGTGGTCACCTTGT 328255 32 100.0 35 ................................ CTTTATCTGTCGTTAGACTATACACTTTGGCGTGG 328322 32 100.0 35 ................................ CACCTTGCGCATCGCTTTAATGGCTTTCCACAAGT 328389 32 100.0 35 ................................ TGCATCGGGTCGGTAAAATAGATAATCGACCCCGC 328456 32 100.0 34 ................................ GTCGAAGGCACACGAGAGATGACCGCGAACAAGT 328522 32 100.0 35 ................................ TACGCCGAAGGTGATGGCTCAGCGCTGATTATTGA 328589 32 100.0 36 ................................ GTCTATTGTAGCCATTAAAACCTCAATCTAAAAAGG 328657 32 100.0 37 ................................ AGCAAAGCCAGGATCTATTTATTCAAAATTTATGACC 328726 32 100.0 35 ................................ TTTACAAATTCTAATTTCCCAATAGCAGCATATTG 328793 32 100.0 35 ................................ ATCGCAAAGTTGTTGAAGCCTTCAATAATTTCAAG 328860 32 100.0 33 ................................ CGGATACCAAATAAAATAATAAAAATAAAATGC 328925 32 100.0 33 ................................ TGGTTCTGTGGTTAGGGTTGATGGGAATCCTAG 328990 32 100.0 35 ................................ ACAATAAGAGAGACCCTAGGCAATGCCTAGGGTTT 329057 32 100.0 36 ................................ AAAGGGCATCGGTTTAATGAATCAACGTGGCGACTT 329125 32 100.0 34 ................................ GCGCGGATAAACAAGCACCATTACAGACTTACCT 329191 32 100.0 35 ................................ CAACCATGCCAAAGTCAAAAATAGAACGAATCACG 329258 32 100.0 35 ................................ TAAGCCACGCAAGCGCACCATCATTTCCTGACGGC 329325 32 100.0 34 ................................ TCCCTATATTAGCCCGCTTTAGCGGGCTTTTTTT 329391 32 100.0 35 ................................ ACGGCTGATCGGGATTGTGCGGTTGCGGTTGCTTT 329458 32 100.0 36 ................................ ATTGCTCGCTTAAAATTATCAACGCGCAAAAAATAA 329526 32 100.0 35 ................................ TTGGAACCAGGGTTCGATTAAGTCATTTACGGCGG 329593 32 100.0 36 ................................ TAGTATTGGAAATGGTAAAGGTGAAGGTGAAGGTGA 329661 32 100.0 35 ................................ ACAATCTCCGGCGGACGCAATTCAATGTGAAATTT 329728 32 100.0 33 ................................ TCGGAGTTTATAGCCCCGTGAATATGGGTCTAA 329793 32 100.0 36 ................................ TTTGTATAGCCCGATCCCTTCTAACGGGTTCCCGCT 329861 32 100.0 35 ................................ AGAATCGGCGAATTGTGCGGCAGAATATTTGTGCT 329928 32 100.0 34 ................................ TGCAATTAAGCTGTCTGATAATGATAGTTTTGAT 329994 32 100.0 34 ................................ CATTTAGTGCTGAGTGTTCTCAACTTGCCACTCG 330060 32 100.0 35 ................................ CATATAATCCAAGCTAACATACCGCTGAAAATCAG 330127 32 100.0 35 ................................ TTTACCTAATTTATCAATGATATAGCCTGTTATTG 330194 32 100.0 34 ................................ GATATTTTGAGTAACTATGCCGTCACTTGTCGTT 330260 32 100.0 33 ................................ GGATTATGTTACAATTCGTAGCGCGGTAAAATC 330325 32 100.0 33 ................................ ACTATCCCCATCTTTTACTATATTAGGATTTTG 330390 32 100.0 33 ................................ TCGATGAAATTTAAAGACTTGAGCGAAGCTGAA 330455 32 100.0 35 ................................ AAGATCGCCCAAGCGATCCGGTATGGACTTACACA 330522 32 100.0 36 ................................ TACCGCTGGTGGAAGATTGTTTAGCAATGCTCTTGG 330590 32 100.0 36 ................................ TACGGTGATTTTGGCATCTGTCACGTTATCCCAATC 330658 32 100.0 35 ................................ CACACAATTTTGCGTTTTTCCACTTCCGTTGCTGT 330725 32 100.0 35 ................................ TTTTGCTGCGGGTTATGCAGACGTTGCCGGAAGCA 330792 32 100.0 36 ................................ ATTAAAGACCGCATAGAAACAACTTTTTTGATGTCC 330860 32 100.0 35 ................................ TCCACCTGCTGATAATGGAGGTTTTGACACTTCAA 330927 32 100.0 34 ................................ CTATCGTAAGCCAGTCAATATGAAAATTCATTTT 330993 32 100.0 34 ................................ CCTTTACCATCACCGGAAGATGAAGAACCATTGC 331059 32 100.0 35 ................................ TTTACCTAATTTATCAATGATATAGCCTGTTATTG 331126 32 100.0 34 ................................ GATATTTTGAGTAACTATGCCGTCACTTGTCGTT 331192 32 100.0 33 ................................ GGATTATGTTACAATTCGTAGCGCGGTAAAATC 331257 32 100.0 33 ................................ ACTATCCCCATCTTTTACTATATTAGGATTTTG 331322 32 100.0 33 ................................ TCGATGAAATTTAAAGACTTGAGCGAAGCTGAA 331387 32 100.0 35 ................................ AAGATCGCCCAAGCGATCCGGTATGGACTTACACA 331454 32 100.0 36 ................................ TACCGCTGGTGGAAGATTGTTTAGCAATGCTCTTGG 331522 32 100.0 36 ................................ TACGGTGATTTTGGCATCTGTCACGTTATCCCAATC 331590 32 100.0 35 ................................ CACACAATTTTGCGTTTTTCCACTTCCGTTGCTGT 331657 32 100.0 35 ................................ TTTTGCTGCGGGTTATGCAGACGTTGCCGGAAGCA 331724 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 55 32 100.0 35 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGTCATATCGCAAAACATTGCTTAGATTACGGCGTACGCGCGCAATATTCGGTATTTGAATGTGATGTCACGCCTGACCAATGGGTCATGTTGAAAAACAAACTGTTGGAGACCTACGACCCTACATGTGACAGCCTGCGTTTTTACCATTTAGGCAGTAAGTGGCGCAATAAAGTGGAGCATCATGGGGCAAAAGGGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGCTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATAAGTTAATTTATTTGTATAACGGCGGTATGGCCGTTATGCTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACAGTGTTTAATCTGCTGATTTTTCTTGCTTTTTTAGCTAGGGA # Right flank : CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTGAAACTTTTGCTGCGGGTTATGCAGACGTTGCCGGAAGCAGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACAAGTATTGAAATTATGCCGAACTTTCGCAATAGCGGGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACGTTCGTCTCGCGGTCTGAACCCGGTGCGGTCAACGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACTCATCAATAAGACGTTGTGCATCTGAGAACAAGGGGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACGCGCCGTGCTCAATCTTGGCAGTGCAGACAAAGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACGGGTGTAACAGAACGCCCCGAACTTCTTCGAGCGGCAGCCGCCTTCGGGTGGCTGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 331901-332529 **** Predicted by CRISPRDetect 2.4 *** >NZ_NRCK01000001.1 Aggregatibacter kilianii strain PN_755 NODE_1_length_432154_cov_28.0141, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 331901 32 100.0 36 ................................ AAGTATTGAAATTATGCCGAACTTTCGCAATAGCGG 331969 32 100.0 34 ................................ GTTCGTCTCGCGGTCTGAACCCGGTGCGGTCAAC 332035 32 100.0 35 ................................ TCATCAATAAGACGTTGTGCATCTGAGAACAAGGG 332102 32 100.0 32 ................................ GCGCCGTGCTCAATCTTGGCAGTGCAGACAAA 332166 32 100.0 34 ................................ GGGTGTAACAGAACGCCCCGAACTTCTTCGAGCG 332232 32 90.6 35 ..........T..G.T................ GCCAAAGGTGACCGTGGCAAGGCACATGAAATCGC 332299 32 90.6 34 ..........T..G.T................ CAGTATTTAAGTTAAGGTGTTTAAATTTTATAAA 332365 32 93.8 35 C......T........................ AGGGTACCACACCACCCCGCCGTGCCAGCCTTTAT 332432 32 93.8 34 ..........T..A.................. TCAAAGTAGATCACAAAGGTGGTGAGCATACCGC 332498 32 96.9 0 .......................A........ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 96.6 34 GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Left flank : GCGGCTGTGTGTTGAAACAAGATCGCCCAAGCGATCCGGTATGGACTTACACAGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACTACCGCTGGTGGAAGATTGTTTAGCAATGCTCTTGGGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACTACGGTGATTTTGGCATCTGTCACGTTATCCCAATCGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACCACACAATTTTGCGTTTTTCCACTTCCGTTGCTGTGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACTTTTGCTGCGGGTTATGCAGACGTTGCCGGAAGCAGCAGCCGCCTCCGCGCGGCTGTGTGTTGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGTTGAAACTTTTGCTGCGGGTTATGCAGACGTTGCCGGAAGCA # Right flank : CTAACGCTTATATATCAATAAGATCAAGTAAGATCGCAGCCACCTTTGGGTGAGTATATATTTTGTCTTTACGAAAAATAAGTGATGTATAAGTTTCAAGCTTTTCTGCAAAAACGTCTGGAAAATCCACCGCACTTTTCTTTCATAAAAATAAAAAGCTGAACCTCTTTCGAGATTCAGCTTTTCTTTTTGGGTTAGATCATTTTAACCGCTCTTTTTATTTATCTACGCTGAAATATTGTTACATTTTCGGAATTTCAACGCCTGAAGAGAGCAGGTCTTGAATATCCGATTTCAGTACATCAGCTTTTGGCCCATAAATGGCTTGAATGCCAGTGCCTTTGACGATAAAACCCATTGCGCCTGCTTGTTTCCAAGCCGCTGCATCGCCCACTAATTCAGGATTATGCACAGTGATACGTAAACGGGTCATACAAGCATCTACCTCGGCAATATTGTTTCGTCCGCCAAGAAGATTGATGATTTGTACCACTTGCGCA # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC # Alternate repeat : GCAGCCGCCTTCGGGTGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //