Array 1 1848-2120 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPOK01000068.1 Leptospirillum ferriphilum strain ZJ UN068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1848 29 82.8 32 C.C..........AC.............G GAGCACCGGGCGATTCTCGACATGGCGATGGC 1909 29 100.0 30 ............................. TAGGTCACCGTCAACAGGAACAGGGCCAGA 1968 29 86.2 33 ..T..........AC.............G TTGGAAGGGGAGGCCCACATGTCGTCAAGAAGA 2030 29 86.2 33 .............AC............AG TCAGATCAAAGCCAAATTCTATGAGTATTCGGC 2092 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 5 29 91.0 32 GTATTCCCCGCGCGTGCGGGGGTGAAACA # Left flank : TTTCTCACCCTTCGGGTCGAGGGGGACGCCTCTTTGATCGATCTCCACCGGATCGTCTGCCGGAACCTTCCGGCGAATCATGGCGGCCGCCCTTTGTTCAGCTTTTGTCGGGAGGACTCCCGCACGCGGCTGTTGATCGACACCGGGGTGGGAAAAATTCCTTCCCCCCTTCCCGTTCCGGGAGCCCGGTGCACGCTTGTCGTGCGCCTGCATCCCGTCCGGCGCTCCGGAGCGGGAGAGAGGGTTGTTCCGAAAAAAGACCAGGTGGACTGGGCCCGCGCAAAACTTGTCGGAGCCGGGTTCGACATCGACCGGATCTCCGGCGAATTTTCGTGGGAAATCTTCGGGAAAAACCGCCTTTCGATCGCCTCGCTCGTGATCGCCGCGACCGGAACCGTCCGGGACTCCCTTCGCGTCCGAGAGGCGATCGACAACGGGATCGGACGGATGAAGGCCTTCGGGTTCGGGATGCTCCTCACGGACCTCGTCCGCCCGTGAAC # Right flank : AAACAACAATGATCAAGGAGGTCGTGTGGTGGAAAAAATCGTCTTCGATCTGACGCTCCGGGCGGAAGCGCCGCTGGCCGTCAGTCCCATCGATTCGGAACTGAAGAAAAATGACCGGATTCGGCGGCTCCCCCGGGTCCGGCCGGAGGAGTCGGCGCCCGTGTATTTCCCGTCGGGAACCCTCCGGCGGGCGCTCCGCCATCATGCGGTCCTCTGCCTTCTGGAGGGGGGGCCCTCGATCTCCCTCGCGGCCCTCCTCGTCAATGCCAAGGGACATGTCTGTCTTCCGGATAAACCGGACAAGTCCGTCACCCCCTCCCGGGCCTCCACCCTGAAGGGATGGGAGGAGGAACAGAGGATCCGCCGCCTGAACCCCCTCCTCGACCTTTTTGGGGCCGGAATCGGGTTTCCCGGCACCCTTTCCGTCGGACACGCCTGGCCCCCGCCCGCGGACAACCCTGGAAAGTGCGTCGGCATTGTCGGCGGGGGAACGCGAACCC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCGTGCGGGGGTGAAACA # Alternate repeat : TTCCCCGCGCGTGCGGGGGTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 3119-3451 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPOK01000068.1 Leptospirillum ferriphilum strain ZJ UN068, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3119 29 89.7 32 .............GT.............C TCTCCAGACGAGTCAAATATACTGGGAAAATC 3180 29 100.0 32 ............................. TTAGGGACCAGAATCCAGGCGATTTGGGCAAA 3241 29 100.0 32 ............................. TGTCGAGTTTGGCCCCGGGGTCGTAGATTCGG 3302 29 93.1 32 ..A.........................C CAGACCGTAATCTTCCATCCGTTTTTCAGACA 3363 29 93.1 31 ..A.........................T GGAGCGGAGCGTTATCGTTTTTCATGCTGCC 3423 29 93.1 0 ..A.........................A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.8 32 GTCTTCCCCGCGCACGCGGGGGTGAAACG # Left flank : CCGCTCGATCCGGACGAGGTCGGCCTCCTGTCCGAGCCGGAGGAGTATTTCGACTTCCTCGAACGGCTGAAATCCGCCTCGAAGAAGAAGAGCGCGAAGGCGAAGGAGGAAAGCTCTCCCGAAGACGACAAAGACGAGACTCTCCAGCTCCAGACCATCGTCCCGGGCCACGAGGTCATCGTTCCGGGGACCGAGCTTTCCTGGAGGATCGCTCTCTCCCGGGCAACGCCGGCGAAGATCGGCCTCGTTCTGGCCGCTTTCCGAAAGCTGTCCGAGGATCCCGTCGTCGGCGCCCACAAGGCGAACGGGGACGGCCTCTTCTCTCTCTCCGGGTCGGCCGTCATGAATCGCCAGTCGGTCGGAACGATCCGGTTGTCGGAGCGCGAATTTTTTGTCGACGGGGTACTCGGGGAATCTCTCGACGCGTGGGACGCCCTTCAACGCGACGGATTCAGGGACTTCGATTTTTCCGCCGTTCCTCTTGCGGAAGAGCGCCCGTA # Right flank : AGAGAGGAGAAACTCATGAAAGAAAAAACACTGGCCCAGACCCTGGAGGCGCTGGTTGCCTCCGCCTTTGCGCCCGACGGGCTCCTCGCCAAAAGAGGGTATCCCCCGAGAAAGCCCCAGGCGGAGATGGCCCTCCGGATCGCCCGCTTTCTCCCGGGAGACCGGATCCCGATTCCCGGCAACAAACCGGAAACCGGTGCGAAGGTGGCAAAGGTGCTTCCGGTCGAAGCCGAAACCGGGATCGGAAAGACGATGGCCTATCTTCTCCCGGTCGCCCTCTATTCGGCCCTGACCGGAAAAAGGGCGGCGATCTCGACGTTCACGCGCTTTCTGCAAAAAGAAATCGTCGCGGGGCGGGATCTCTCCACCGCCCTCGAGATCGTCCGGGAGACGACGGGGCGAACCCTCAAGGTGGCCCTCCGTCGCGGGATCTCGAACTTCGTCTCTCCCTCCAAGGTGGAGTATCTTCAGGCCCTCTTTCAGGCCGAGCATCCGGACTG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCACGCGGGGGTGAAACG # Alternate repeat : GTCTTCCCCGCGCACGCGGGGGTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGCATGTGGGGGTGAACCG with 89% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //