Array 1 1-678 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAS01000227.1 Weizmannia coagulans DSM 1 = ATCC 7050 strain DSM 1 contig000227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 25 83.3 35 -----......................... ACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTAT 61 30 100.0 35 .............................. GCATTTCCGCCATGGCCTGTTTTTCCGTGGCGTGC 126 30 100.0 37 .............................. ATTTTTACCCATGCCCCGTTACAAGGGACGTTTAATT 193 30 100.0 35 .............................. TGAAGCAGGCCGAGCGCTTTCGTGCGCTGCTGGGC 258 30 100.0 38 .............................. TCCCACTCTATATTGGATACATCACCGACCGGATGAGC 326 30 100.0 36 .............................. TCCCCTACGCCTTTTATGCTATTTTGTAAGGCGCCC 392 30 100.0 37 .............................. AAATGCTTACAAGCACTAAATCGCACCCCCAAACAGA 459 30 100.0 35 .............................. CGAAAATGCAAAAACTGGAGATAATCAAAAAGCAA 524 30 100.0 35 .............................. TTAAAAAAGCTGGAGTAAGGCATATCCGCCTGCAC 589 30 100.0 35 .............................. ACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTAT 654 25 83.3 0 .........................----- | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 97.0 36 GTTAGTATTTTACCTATGAGGAATTGAAAC # Left flank : | # Right flank : | # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 56169-56862 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAS01000251.1 Weizmannia coagulans DSM 1 = ATCC 7050 strain DSM 1 contig000251, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 56169 30 100.0 36 .............................. AGGCTTGATCCAAAGTTAAACTCTCAATCGCCTCTG 56235 30 100.0 36 .............................. TTTGGCATAACCCATTGGTCTGTCTTCACTTGCCTA 56301 30 100.0 35 .............................. ATTTTTACCCATGCACCGTTGCAAGGAACATTTAG 56366 30 100.0 36 .............................. CATGGACAGGCGTTCAGAAAGCTCTGTCCGGTATTA 56432 30 100.0 37 .............................. AGGGTGTAAACTGGGTTTTAAAACGGGTAGGTGCTAA 56499 30 100.0 38 .............................. TACCTATAGCTTTTTATACCAAATCAAAAATGTGCACC 56567 30 100.0 36 .............................. CTTTTTTTGCCACAGTATGGGCAAATTACCGTTTGC 56633 30 100.0 36 .............................. ATATCCGGCCGCGATCAGATCCTTTGCCTCCTCGCC 56699 30 100.0 37 .............................. CCCAGATACTGTACATTTAGTTGTAAAACGGTATAAA 56766 30 100.0 37 .............................. AGGAGTGGTAGCCACGTACCAGTCAAACTGCATTTGT 56833 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 100.0 36 GTTAGTATTTTACCTATGAGGAATTGAAAC # Left flank : AGTCAAAATATGGATTCTCGATGGGCAAGATTTCAACGCATTCATTTGACGCCAACCAAATGGATCTGCTGATTAAACTGCTGGCATACAATTTATTCGAGATCTTTAAAAAAGAACACTGTCCGCCAGCGTATCGCTCTTATACGATCAGGCGATTCCGGAGGGAATTCATCTACGCGGCTGGCGTGCTGGTCTATCACAGCCGAAGTGTCATTTTAAATATTTGTGAAACATACGCCCATAAAAAGGCATTCCGGCAAATGATTCAAAGTGTACGGCTGATTGACTGAGTGTGAAGGCTGAAACAGAATACTGGAAATTGAAACGCCCGCAAATGTGGGGAGGGGGCAACTGTGGCCTTAATAACCCAAAAATAGGCAGTTGTGATTCCATTTTTGATAATATTATCCATTTATTTTCCATATGATTCCAATTACCTGCATCAATCTAGTAAAGTTTTGCACTTTCTTAATTTGGGATAATATCAGTGAGTTTTTGGA # Right flank : ACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTATGTTAGTATTTTACCTATGAGGAATT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 61-419 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAS01000290.1 Weizmannia coagulans DSM 1 = ATCC 7050 strain DSM 1 contig000290, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 61 30 100.0 35 .............................. CTCGCTGTGACATAGTAAGGCGTTGTTTTTGCCGT 126 30 100.0 35 .............................. TTCGTTTGAGTCTACTAGCTGGACGCGATATTTTT 191 30 100.0 38 .............................. GCGACTGTAAAACTAGAGTTGATACGATATAAACCGAA 259 30 100.0 36 .............................. GCAGTATTCCAGTCAGTAAACACGTTGGAAAATACC 325 30 100.0 35 .............................. AGACAAAGAGGGAGGCACAAATTGCCGCCGCCGAA 390 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== ====================================== ================== 6 30 99.5 36 GTTAGTATTTTACCTATGAGGAATTGAAAC # Left flank : TATTTTACCTATGAGGAATTGAAACACCGCGTATAAATTGCTAGGCCTTTCCTCGAGTATG # Right flank : ACACTCAATATAGCCAGTGGGAAGTTAATTTCTATTCTGAAAATATGTGCCGACTTGATTTTCATTCACCCGCTGGTGTCGCGTTCACTGCGGCACGGACTCCTAATTGAATAAGAAATAAGTCACTTTCACAGTCTATCCCGCTGAATCAAATTTAACGGCTTTCCGAAAGAAGTCTCCCATCCTCAAGGAATGTGAAGGTGCGAATCGCACCAATGAGTAGGTGGGAGATGAATTTCGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGTATTTTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 4622-9922 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALAS01000231.1 Weizmannia coagulans DSM 1 = ATCC 7050 strain DSM 1 contig000231, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 4622 32 100.0 34 ................................ TAAACTATTGTTACCAGTCCACCCGCCGACATAA 4688 32 100.0 34 ................................ CGTACGAGGAAAACACGTTCTTACTAAGTGGGGA 4754 32 100.0 32 ................................ AGGTTACTTTTAAAGTCGTAAACTCTCCCGAC 4818 32 100.0 34 ................................ TTTGGATACTGCTGGCGGGACTACGTCGGATAAT 4884 32 100.0 33 ................................ TAACAGCTTGTTATCAACCGTGTTTCCTATACG 4949 32 100.0 34 ................................ TTGCCTATGCTGTACAGACTCATAAACCGCGGCA 5015 32 100.0 33 ................................ CTTATGATTTAATTATAGCATGAATGTATTTAC 5080 32 100.0 33 ................................ GCCGTTCACCTTTAGTGCGAACAGCCCTTTTGC 5145 32 100.0 33 ................................ AAGTATTTTTTTGCGTGTTGACGTGTTGGCGGT 5210 32 100.0 34 ................................ CCTTTGTTCTTTCGCTATAATTCTATAATTATCC 5276 32 100.0 33 ................................ CACTTAGTACTATGTTAGGCATTATGGTGACGT 5341 32 100.0 34 ................................ TATCTTTTTCCGCGCAAATTTAGTGAACTTGAAC 5407 32 100.0 33 ................................ TTCGCTCATCTCACTGCTTTTGTTGTAAGTGGT 5472 32 100.0 33 ................................ TTTAACCGGTAGCAGTTGGCGTGCTTCATCATT 5537 32 100.0 33 ................................ CTTACGAAATGGAAAGGTTTGTAAATTGAATTC 5602 32 100.0 34 ................................ CGGCATCAAAGTAACTAAAGATGTAGCGGATCCT 5668 32 100.0 34 ................................ TTATCCCTTATAACAATCTTTATGGATAAGTGCA 5734 32 100.0 33 ................................ AAAGTCTGGATGTGCTGTTCTATCTTTTTCCGC 5799 32 100.0 34 ................................ ATACTATGCAGCCTGGTATATTCCGGGTCAAAAG 5865 32 100.0 34 ................................ CGCCACCAGTTATCCAGTTGAAAAAGGGTCGCCA 5931 32 100.0 33 ................................ TTTACAGTGGATCTTTATGATGCAAGCTTGAAT 5996 32 100.0 34 ................................ TAATGTCAGCGCGGTTGTAAATCCAGAGCCAACC 6062 32 100.0 33 ................................ TTATTACAAAATATTAATCCGAACTCGAGGGAG 6127 32 100.0 34 ................................ GTATATCTCCTTGAAGTTCCAGTCGACCTGCACA 6193 32 100.0 34 ................................ GCTCGTGCAAATGGTGATGGCTGGCGGAATTGCT 6259 32 100.0 34 ................................ AAAAGTAGATCTGTACACAGGATCCCATTTTTAC 6325 32 100.0 33 ................................ TACGGTGATGAAATGAGAGATTTACTCCATAAA 6390 32 100.0 34 ................................ CTGACTCAAGGCATATAGTTGCATGGGTATGTCT 6456 32 100.0 34 ................................ GAACCAACGCTGAAATAATTCCGATACAGTGATA 6522 32 100.0 34 ................................ ATCTTGCATTGCCTGTTGCTGGATCTCGATACTG 6588 32 100.0 34 ................................ CTTGGGGGATTCCGTAGCGCGTATAGTCCCAATC 6654 32 100.0 34 ................................ GTGCGAGCATGTGAACGCTTTATCCTCATCAATT 6720 32 100.0 34 ................................ AAATGAAATAGCTACCGAATTGGAAACGACTTTC 6786 32 100.0 35 ................................ GCCATCGACGACTTGCCTATGCCAGCTTTTTTGGC 6853 32 100.0 34 ................................ ACCGCACGCTATTTCGCCTAATATTGGTACATAT 6919 32 100.0 34 ................................ CAGGCGCTGGTACCGTCAAGTTCTGGGAGTTCGT 6985 32 100.0 34 ................................ TTATAATTTTGTTAGCAGGCGTTCCCAATTGTCC 7051 32 100.0 34 ................................ CAATTGCTACCGTCCCACCATTCATATACCATTA 7117 32 100.0 34 ................................ CCGGCCACAGATACGCTGGTTAACCTGCCGAAAG 7183 32 100.0 34 ................................ CCGGCCACAGATACGCTGGTTAACCTGCCGAAAG 7249 32 100.0 34 ................................ CTCAGCCGGTTCATCGTCTTCCACAGCTTCTTTC 7315 32 100.0 34 ................................ ACTCCCTCACATTAAAAACTTTTGCACAAGGCTA 7381 32 100.0 34 ................................ TTCCATATCTTTTTCCTTCATCGGATCAACAAAT 7447 32 100.0 33 ................................ GCCAATCCCGCCTGTAGAATTATTCCACCCGTC 7512 32 100.0 34 ................................ CATGTACTTTTCTACATCTCGGCCAATCTTTTTT 7578 32 100.0 34 ................................ AATTTCGCCGGCGGTCAACAGAATCGGGCGAAAA 7644 32 100.0 35 ................................ GCCAATCCCGCCGGTAGAATTATTCCACCCGTCCC 7711 32 96.9 34 ........................T....... ACTTGTGATTATTACTTATAACATTACTTTATAT 7777 32 100.0 33 ................................ TTTTGATAAGCCGTATGGCGGGTCTGTTACGAC 7842 32 100.0 34 ................................ ATAAAGGAAAGTTTGAACGATGAAGGAAAGTACC 7908 32 100.0 35 ................................ CGATTCCTTGTATGGCTTTCTTAGTACCAGACATG 7975 32 100.0 34 ................................ AGTAGGAGGTTTATGATGATACAAATTTTTACGG 8041 32 100.0 32 ................................ ATTCCCTGTATATCTACTTGCAATTTCATCGC 8105 32 100.0 34 ................................ TTTCCTCAATCTTTTTATTTTTTCTCCTGGCCTC 8171 32 100.0 35 ................................ CAAACGTTATCTCCAATATTTTTAAGTTTGTCCCA 8238 32 100.0 35 ................................ CAAACTGCTTGACGTTGACCAGGTCACGCGGTCAG 8305 32 100.0 33 ................................ AAAATCCATCGCTGACTTTGTCGCCAGTCCAAG 8370 32 100.0 36 ................................ CTTGTTTATCTTTCGAAATAAGCTCCAGAACGCAAT 8438 32 100.0 34 ................................ TTTCAGCCAAACGTGACTGCGACCGGTGCGCTCT 8504 32 100.0 33 ................................ AAACTTGGAAACCGTGATAGCAACCTCATCGGA 8569 32 100.0 33 ................................ CACATCAACGCGGCTTTCGGCCGGGGCAACGAT 8634 32 100.0 34 ................................ TGATAGTGAGGTTGCACAGAACCCACTATTTTTT 8700 32 100.0 35 ................................ TTTTTCGGCGGGAGCCGGCCTGTCCACCCGCAGAC 8767 32 100.0 33 ................................ CTGCATAGCCTGTTTTTCCGTGGCATGCCAGCT 8832 32 100.0 34 ................................ CGGGTCGATCAGGTACACGTATGCCTTCGAGTTG 8898 32 100.0 34 ................................ ACGATGCCTCACCTTCCTGGTCGCGTTCGATGAT 8964 32 100.0 34 ................................ ACCTTCCCAATACACTGTATTATCAACTGCAAAG 9030 32 100.0 34 ................................ CCCATCAAGTAAAAGCAGTTGAAAAGCTATCGAA 9096 32 100.0 34 ................................ CGAAATGATAAGCAATCCCATTCTTAATGTAAAA 9162 32 100.0 34 ................................ AATGATGCTGACTAAACGTGACCGCGCCATTATT 9228 32 100.0 35 ................................ CTGTTGATAAAGCCATTGGCCAACAATCAGCGCAC 9295 32 100.0 33 ................................ CACAGAAGCAAACCAAATGGCTTCCAGGCTTAA 9360 32 100.0 35 ................................ CAACGTTTCGCCTAACACCGTCGCGCCACCTCCGG 9427 32 96.9 35 ...T............................ CTCCTCGAAGTAGGCGACAGCTTGAATGACATAAA 9494 32 100.0 34 ................................ AGTATTGGAAAAGTAGCCATGGGATCCGCGACAA 9560 32 100.0 34 ................................ GGTATCAAATCCGTAATCTTCGAGAGCCTTATTT 9626 32 100.0 34 ................................ CGACATAAGCTAATACCGCCGGAATCCCTGCCAG 9692 32 96.9 33 ............A................... CAGCAAAAAACAAAACCGTGGGGGCCTTACCCC 9757 32 96.9 34 ............A................... CTTTTGATAAATGCATTGCACGACCGGATGAAGT 9823 32 93.8 34 ............A......A............ GTGAATCCAAAAGGTAGATAAAGAAACCTATGCC 9889 32 78.1 0 ..........G.A.......A..A.A.A...C | G,A [9892,9904] ========== ====== ====== ====== ================================ ==================================== ================== 81 32 99.5 34 GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Left flank : TGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAGATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCTGGGCAGAAAAGGCTGAGAAAAGTGGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTTCAGAATTCTGTCTTTGAATGCTATGTTGATGCAACTCAATTTGCATCTTTGAAGATTGAACTGTCTAATATTATTGACCCGGACGAAGATAGCTTGAGATTTTATCAGTTGGGGAATAACTATAAAAATAAAGTAATGCATATTGGGGCAAAACCATCTTTGGATTTAGAGGACCCATTGATCTTTTAGAGTGCGAAGGTGTAGCGCACACGATTTTTCCTGTGGGTTCGCACCATAATATTAACCAATATTTTACATATATTGGTCTTGCTTGGTAAATAGTTCTTTGTTTTATCAGAGGAAATAGCGGAATTTGGTTGTTTTGAAAACACACATTCGCATTTTTTGCCAAATTCCGCT # Right flank : CAACATCCACCAAATAGAAACAATTTTTGATCTTTTCTAAAACTTAACCTTTGATGCAACGCTTGGCATTCCCGATGGAATTGAACAATTATTGCTGCCAGAAGTGCTGCCGGTAATAATTCCGGTTCCTACTGTTCCATGCAGCCTTGCATGCAGCTGCCTGGCCAGAAAGAAAAGAGCCCAAGTCCCGCCTGCAGGAATAATAAAACAGAAGCAAGCAGCCCTGCCCAAAAAAGATTTTAAAGTTTTTCCCATTGAAGGCTTGCTGAGCGAACCAGACAAAGCTTTATCTCTGGTTCGCTCAGCCGCAAAACTGGTTGATGCCGCCTTCTTTTTTCTTTAAATCCAAAAAGAGGCGCAGATCGTGCAGGCAGCAGTGACAAACCCTCTTTGTGAAATTGCCCTTGTTTTTATAGTCCCCCGAACCGGGTCCAGGGCTTTTGCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCATCGTCCAGTTCCCTGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACGTGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTACGCGGGGGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //