Array 1 35436-37207 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDL01000004.1 Providencia rettgeri strain AFE422_S1 40_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35436 28 100.0 32 ............................ ATCAACAAGCTGCTTATCGAGCATAAAAGATT 35496 28 100.0 33 ............................ GTCAAACCTTTGATTACTCAGCACGTTATTTCT 35557 28 100.0 33 ............................ AGTGTAATCATCTGTCGCTAAATCCAAACGTTT 35618 28 100.0 32 ............................ ATCCTGACTTAAAAAAATTTAACGATGATTTA 35678 28 100.0 33 ............................ TTAACTGTTCTTAGGTTGGCTTAACCAGATTCT 35739 28 100.0 32 ............................ ATCCAGACCAATGTGCAGTGACGATGAAGGAA 35799 28 100.0 32 ............................ GCTGTAATTAGCCAAGTATGCAGAACTGCATC 35859 28 100.0 32 ............................ TTGTGGCATTTCCTTGCCACTGCTCGCAATCC 35919 28 100.0 32 ............................ CATCGTAATGGCGAGTCACTCCAAATTCAACA 35979 28 100.0 32 ............................ AGTACGCCTTGGCGCTTTTGCTCTCACTTCAT 36039 28 100.0 32 ............................ AAGCTAGCATCAAGTAAGATACTGACCGTAAT 36099 28 100.0 32 ............................ TCACAGGAATAGAAATCGAAATCGGTTCACCC 36159 28 100.0 33 ............................ GTTGGCATTTCTTTTAGTTCGACTTCGGAACGA 36220 28 100.0 32 ............................ TTTGCTCTCCGCCATTCCAGCGACTACGGCGA 36280 28 100.0 32 ............................ TTTGGGGAATTGCAGGAGGGATAACACCTTCC 36340 28 100.0 32 ............................ AAGAAGAGTGTAAGCGACGAACTGGAATAAGA 36400 28 100.0 32 ............................ ACTAACTACCGCGGCATTATAACCAAGAGCCA 36460 28 100.0 32 ............................ TAGTTGTATTTTCTCTAAAAGGTGTGCTACGA 36520 28 96.4 32 ............A............... AGTAGGTCATACCACGGAAAATAGCCGCAACA 36580 28 96.4 32 ............A............... AGTTTCAGTGTGTATCGCAGATATTGATTGCT 36640 28 96.4 32 ............A............... GTGACGGCCACATTATACCGCCACGGCATATC 36700 28 96.4 32 ............A............... ACGCTAGAATCAGCTCCGAAAGTTGATAGAGT 36760 28 96.4 32 ............A............... ACTAATTGGGTAGCGAGGCCACTTTCAATAAT 36820 28 96.4 32 ............A............... TCCCCACATTGAAATGAAGAGCATTAATAACC 36880 28 96.4 32 ............A............... ACAAGGTGTTTATGAGGCAGTCGCAACAAACC 36940 28 96.4 32 ............A............... CTACCCACGCCACGCTATTTATGTGATTTAAC 37000 28 96.4 32 ............A............... ATTGTGATCAGTGAGCAACGTACCGGGCAATA 37060 28 96.4 32 ............A............... GCCACCATCGCCCACTGCCATGTGCGTTAACT 37120 28 89.3 32 ..........G.AT.............. TTTCCCCTTGAAGAGCAAGGTACTTTAACTGC 37180 28 85.7 0 ............AA........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 30 28 98.0 32 GTTCACTGCCATGCAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGTACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTTTATTTACGCACTATTTTCGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCATGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 45845-46835 **** Predicted by CRISPRDetect 2.4 *** >NZ_SHDL01000004.1 Providencia rettgeri strain AFE422_S1 40_contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 45845 28 100.0 32 ............................ CATAACTTCAATCTGTTCTGCTCGAACATCTA 45905 28 100.0 33 ............................ TAGAGCAAAAAATATGCAATTAGCTAAATTAGA 45966 28 100.0 32 ............................ CGTATGCACTTGCTGTTTCGAAGTGATTACTA 46026 28 100.0 32 ............................ TGTGCTTTTGCTGCTTCCACTTGTTTAACATT 46086 28 100.0 32 ............................ GCACCAACTTACAAAGCCGTACCTTTACCACT 46146 28 100.0 32 ............................ ATAAAAACCTGTCGTTGCTTGCCCCGGTAAAC 46206 28 100.0 32 ............................ TGCATGTTGCGCTTCCTTAAACACGTCGATTA 46266 28 100.0 32 ............................ AGCCCAAAGAGGGTTAACCAAACCACTACTGG 46326 28 100.0 32 ............................ AGTGCTATACAACAAAACTGGCTCGCCTATTT 46386 28 100.0 33 ............................ GCTTGCACTGCCTGCGCTATTTTTGGCTTGTTC 46447 28 100.0 32 ............................ GCTATATCCTTGTAGTACTGGAACTTTATTAC 46507 28 100.0 32 ............................ ACTAAATGCCAGTAGGCAGGAGTTTTAAAATG 46567 28 96.4 32 ..........A................. AGAACACTTTAACCGTATCGCTATCAATCGAT 46627 28 100.0 32 ............................ CCCATGTATAAACTCACGGCCTAATAACTTAG 46687 28 100.0 32 ............................ TGTCGAAATTCAAAACTGTCAAAAGTCTTATA 46747 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 46807 28 89.3 0 ...T......A.........T....... | G [46833] ========== ====== ====== ====== ============================ ================================= ================== 17 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCAGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGTCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACCGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGATAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATGATTATTCATAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAATCAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATAATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAACATACTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //