Array 1 1750-1431 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYE010000860.1 Streptomyces sp. McG6 NODE_860_length_2358_cov_3.43971, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================================== ================== 1749 24 79.2 67 ..A.G...A.A....C........ AATCAGCCCGGCCAAAACCCAGCTCAGCCAGAACCCAGCCCCGCCAAAACCCAGCCCGGCCGAAACC A,T [1734,1743] 1656 24 100.0 46 ........................ TCTTTGACCGCCCCGGTCGAACGGCCCGCACAGCCCGGCAAACCCC 1586 24 100.0 40 ........................ TCGTGAGCCGGCACGGAAAGCCGGACAGCACCCCCACCGA 1522 24 95.8 43 ...............C........ CCTCCATGACCGGCACGGTCAAGGGGCGCCCCCGCCAAGCGAA 1455 24 83.3 0 .......C.....A.A.....G.. | T [1433] ========== ====== ====== ====== ======================== =================================================================== ================== 5 24 91.7 49 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : ACGCCGACAAGGACGCAGGCCAGGGGAACGACTCAAGGAACGGTGCCGATGCCCCCGACACCGGGGACAAGGGCAACGGTTCCGGCGCCTCCGGCGGCTCCAGCTCCTCCGGCGGCGGTGGCGGCTCCGCCCCCACCGAAGACTCCGACGGGGACGCCAAACCCCCGTCCGGCGCCCACCGCTACCGCAACGGCGAGAACGCCAAATGCCTGGCCGCCCCGTTCAACAGCCCACCCACCACCGCCGCCTGCAACGGCTCCGGCACGGTCTGGGCCTTCCGCCCCCTCCCGGACGGCTCCTTCGAGATCGTCCACGAGTCGGGCCGCTCCTGCCTCTCCTCCGGCGCCGGAGGCACCCTGCTCCTCTCCTGCAACCAGGCCGAAAGCCGCCGCTGGCGCACCGGCCCAGAAGGCACCCTGAAAAGCGTAGGAACCGGCGGCTGCCTCGGCACAGTCAACGGCTCCCGCATCACCACCACCCAGTGCACGGGAAGCCCGTCC # Right flank : CACCCTGCCGACCACCAGCCCGCGAATCCCCTCCCCCACCTCTTCGGGGTACCGCACGACCTTCCCGAACCCCAGCCGCACCTCCTGGTGGCTGCGCCCGGCGTGCTCGAACCGCAGGGTGATCCCGTACTGGTCGAGCCGGGCGGGACGCACCCGCACGGCAGCCGCCCGTACGTCGGCGGGGGCGAGCCGCGCCAGCGCCCGCACCATGTCCTCGTGGGCCGAGTCGAGGTGGGAGAGGAGTTCGGCCTCGGCGCGGGCCAGCGGGTCGGGCTGGGCCACGACCAGTTCGTCGACGCCGATGCGGCGGCTGCGGCCGTGCTCGGCGAGGACGGCGTACTCGGTGTGCAGGTGCAGGCCGCGGTCGGCGGCGGTCCCGAGCCAGCCGTGCAGGCTGAGCCGGGCGCGGACGCGGTCGCGCAGGTGGACGGGGGCCACGTCGGTGAACTCCACGACGGCGGGGAGGGTTCCGCCGAGGGAGGCGTCGAGTTCGGCCCCGA # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1648-4851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYE010000216.1 Streptomyces sp. McG6 NODE_216_length_8307_cov_23.5605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 1648 29 96.6 32 ............................C TGCGGAGGTGCCTTTCCGCAGGTCAGAGCCGG 1709 29 100.0 32 ............................. GAGTGGCTGTCGGCGACCTGGACGGACGTGGT 1770 29 96.6 32 ............................C TCGCTGCGCTGATCTGCTGCGGGACGGCGGGC 1831 29 96.6 32 ............................C TGCTGATGCTGCGGGCCGGTCTCCAGGGCCGC 1892 29 100.0 32 ............................. GGAGCAGGGGCAACGCTGGCCGCGATCTGTGC 1953 29 96.6 32 ............................C CCATACACGCGCGGCCCCTGCCCGAGCTGCAA 2014 29 100.0 32 ............................. CCACTGCTCGTGCTCGACTTGCGCCTGGTCCT 2075 29 100.0 32 ............................. GGCATGGCGCTGGAAGGCGTGCGGCTCGCAGA 2136 29 96.6 32 ............................C GCCGGCATCCACACTTCGCCGCCTCCGCGCTC 2197 29 96.6 33 ............................T CGAGACTCGCTCGCACGTCAGATCGCACGTCAG 2259 29 96.6 32 ............................C TCCAGCTTGACCAGCACGCTCGCCCCGCTGGT 2320 29 100.0 32 ............................. GAGGTACAGCAGTCCGTCCAGGAGGCGTTCTT 2381 29 96.6 32 ............................T CGCTGAGGTCGCGGCCGAGCTGGCGGCGGCCC 2442 29 96.6 32 ............................C TTGCTCGGCCTCGGCCGTCCCGATCCATATAC 2503 29 100.0 33 ............................. CGGCGCCGGATCTCGGTGTGGGACGGGCGGCAG 2565 29 96.6 32 ............................C TGCGGCACCTGGTTCAGCTCCCCCACCGGGTC 2626 29 96.6 32 ............................C TGCCTCGCCAACAGGACATCGGCGCCGAGTAC 2687 29 96.6 34 ............................C CCCCCCAGGTCAGGGGGTTGCCGATGGCGGTGCG 2750 29 100.0 32 ............................. TCCGGGACCCCTTTGCGTAGTCGCCACCCGAC 2811 29 100.0 32 ............................. TGCTTTTGGGTCGCCCGGGGCGGTGCTCAAGA 2872 29 96.6 32 ............................C AGGCTCACCCAGTCGGTCCTCGGCGCCATACC 2933 29 100.0 32 ............................. GGGAGGCAACTGGGGAGGTGGGGAGTTCTCCC 2994 29 100.0 32 ............................. TCGGGGCTGGGGCGCAGGTCGGTGGCGATGTA 3055 29 96.6 32 ............................C GCCGTACCCGCACCATCGAGCGGACCCTCCTG 3116 29 100.0 32 ............................. GCGTCCTGGAGCCACGTCGCCGTCCCCGAGCT 3177 29 100.0 32 ............................. GGTGTGTCGGCTGAGGGTTGGGCGGCCGGTTG 3238 29 100.0 32 ............................. TGGGCGGCCTTGATGCCGGTGGAGGTGACGCC 3299 29 96.6 32 ............................C TCGACATCCCGCAGATCCAGCCCGGCCACGAC 3360 29 100.0 32 ............................. GGAGGGCAGCGCCAGAAGTCGCCCGGCACCTG 3421 29 100.0 32 ............................. CGCTACACCACCGACCACGGCCGGGTGGACGA 3482 29 100.0 32 ............................. CGGGAGGAGGCCGAGGCCCGCGACCGGGCCCG 3543 29 96.6 32 ............................C GACGGCCGCGTGGACGGCAACGCCCGCTTCTA 3604 29 100.0 32 ............................. GCGCGGCGGGTGGCGGCCGCGTCGCCCATGTT 3665 29 100.0 32 ............................. CGATGACCCCTGGGGTAGGGCCTCCGGCTTTC 3726 29 100.0 31 ............................. GTGGCCCGGCCGGCGGCCCGCTTCCTGAGAC C [3752] 3787 29 100.0 32 ............................. GCGGCCCGGCGGGCGGGGTCCTGCATGGTGCC 3848 29 96.6 32 .................C........... TGCACTCACCCTGACCTCGACCTGCCCGGAGG 3909 29 96.6 32 ............................C CTGATCCCGCTGCCGATCGACAGCTGGATGCC 3970 29 100.0 32 ............................. GCTTCCTGGAACCCGGCGTGGGTGGTGCGGGC 4031 29 96.6 32 ............................T CTGCGCGACGGGTTCTCCTCCCGCCGCGTCGC 4092 29 100.0 32 ............................. GTCTTGGCCAGCCCTGGATTCTGGGACACCGC 4153 29 96.6 32 ............................C GTCATCGGCGGGTCCAGCCGGCCACCGGGCGA 4214 29 100.0 32 ............................. GTCATCCAGGACACGCTCGCGGCCGTCACCGC 4275 29 100.0 32 ............................. GCGTCGCGGCCCTCGGCGGCCCGGCGTTCCAT 4336 29 96.6 32 ............................C TGTCCGCGAGCTGCCGGTGGTCCGGCTGGTCC 4397 29 100.0 32 ............................. ATCGAGTCCTCGGCCATCCCGTCCTCATGTCG 4458 29 96.6 32 .........C................... GCGTCGGCTGCCCTGGAGCGCGCGGCCGAGGA 4519 29 93.1 33 ........G...................C TCGTCCCAGGTGATCGCCATGGGCACTCTCGAA 4581 29 100.0 32 ............................. CGGTGCCCGGCGACGTCGCGGGCCAAGTCCTC 4642 29 100.0 32 ............................. GCCCGCCAGCTCCGCTACGACCTGGACGAGCT 4703 29 96.6 32 ......................C...... AGGTCATCCGCGACGGCGGCCGGACGTTCGCC 4764 28 89.7 31 .....T.T........-............ CGCGCCACGCAGGACCACTGGCGCACCTGTT 4823 29 93.1 0 ..............C.............C | ========== ====== ====== ====== ============================= ================================== ================== 53 29 98.1 32 GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Left flank : CCGCACAAGACACTCATCCGGCCACCCGCTCACACCTTGACCTCTCGGCAGCTGCGCTCGGGGAACAGCACATCGCCATCGTCGGACCAGAGTTCGAAGACCAAGCCCCGCCCCCGGGACAACAGCCATGACTGTCATCATCCTGATCGCGGCTCCAGAAGGCCTACGCGGCCACCTCACCCGCTGGATGGTCGAAGTCAACGCTGGAGTCTTCGTCGGCAACCCCAGCCGGCGAATCCGCGACCGTCTGTGGGAACTCCTCACCAACCGCATCGGCGACGGTCAAGCCGTCCTTGTCGAACCCGCCGCCAATGAACAAGGCTGGGCCGTCCGTACTGCCGGCCGTGACCGCTGGCGGCCCGTCGACTACGAAGGGCTTATCCTCTCCGCTCGAAGGCCAGCACATACACAAGATCGACAGAGCCGGAACTGATCGGTACACCGCAATGCAACTAAATGAGAACGGCAGACCGCTCAGATAACGCCGCAGGTCAGCAAGT # Right flank : CTTCCCTTGGCGTACGGCGTCGGGGAGCCAGCGGTCGGCCCGGCCGACTGGCAGTCGCCCTCCGGGGCGGCCGCGGATCGCAACCGCCCGGCAGGGGAAACCCCGGGCCTGGGGCTCAGTCGTCGGGGGTGGTGTTGGACGCGTCGCAGGACCAGCAGGTCCACTCTCCGGGCAGTTCGTAGTGCGTGGTGGTCCAGAACCCTTTGGGGCGTCCCCGGATCACGTTGATCTCCCAGCACCGCCAGCAGTTGAACTCGAATTCTTCCACCACTTCAGCATCAACAACTCGGGGTGATCGGGCGGCCGACTGCCCGAAAGTCGATCAAATGCGGCTGAATCGTCAGGCTTGCCGAGCAGTCAGAGATCTGGGCAAGCCTTCCACCTGGTCTCTTCGTGGGTTGGGCAAGCCTTTCGGCAAGTGGGCGTGTGGAGAGTGGGGCACATCCGTTCCCGAGGAGGTGTGCCGTGCACGACTGCGGACCGGCGCTGACGCCGTACGA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCGCCTGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCGCACGCGGGGATGCTCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 16316-14274 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYE010000003.1 Streptomyces sp. McG6 NODE_3_length_30466_cov_24.3145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16315 29 100.0 32 ............................. TGCTGGCCGATCTGGTGCTGCCAGATGGCCTT 16254 29 96.6 32 ............................C CCGTGGGCCGGGATGGCGTCCCTGCCGTACCG 16193 29 96.6 32 ............................C CCCCTCCGGGACCCTCCGGAGGGGGCTTCTGG 16132 29 100.0 32 ............................. TCGATCCCGATCAACGAGCTGTCCGCCGCCGC 16071 29 96.6 32 ............................C CCGGTCAGCATCGCGGTGAAGACCTGTTCCTC 16010 29 100.0 32 ............................. TACCTGCGCCCCTTCACCACGCTCGCCGTGGG 15949 29 100.0 32 ............................. TTTCCCGGCGGCTTGCGGTGCAGGCTGCGGGG 15888 29 96.6 32 ............................C CGCAGGTCAGCGACCGGTACGCCGCCCGTACG 15827 29 100.0 32 ............................. GGCATCCCGCAGCCTGACCTGGAGGTGCGGCC 15766 29 100.0 32 ............................. AAAAATCCAGGCCTGGCGGTGGCGCGCTGCCC 15705 29 96.6 32 ...........G................. ACCTCGTGGGCTTCCTCTTCACCGCTCAGGAC 15644 29 100.0 32 ............................. GCGTACCAGCAGCTCGCCGCCGAGGGGTACGT 15583 29 100.0 32 ............................. CCGTCCCGGTACGAGAGGGGACGCGGATGAGC 15522 29 96.6 32 ............................C CTCGCCGGCAGTAGGCGGCCACCGTGATCAGC 15461 29 96.6 32 ............C................ AGCCCGGCCACGTTCCGCTGGCACCTCGACAA 15400 29 96.6 32 ............C................ GCGGCCGTCACCGTGGTGCCGAAGATCAAGAC 15339 29 96.6 32 ............C................ GGATCGTCGCCGACCTGGACCTGCTGCCCGCG 15278 29 96.6 32 ............C................ TGGTCTTCGGGCGAGCAGCCGCCTCCCGGGTG 15217 29 93.1 32 ............C...............C GCGAACCTCGCCCCGTATCTACTGCCCGAGCT 15156 29 96.6 32 ............C................ TGCGGACCCTGGGGGCGCATCTTGAGATCGAG 15095 29 93.1 32 ............C...............C ATGCCCGCGCTGGGCGGTGACGCCGAGGAGCT 15034 29 96.6 32 ............C................ GTCCCCCGCCCGTGGCGACGCTCGATGAGCCC 14973 29 96.6 32 ............C................ CGGCTGGACACGGCCTCCGCCCAGATCGCGCA 14912 29 89.7 32 ............CC..............C AGCGCCTTGTAGATCATGTGCTCCACGGCGTT 14851 29 86.2 32 ...........GCC..............C CAGACGGTCTCGCCGCGCAGCGCGTTCAGGGC 14790 29 93.1 32 ............CA............... ATCTCCGAGACCGTGCCGAGGACGTTGCCGAG 14729 29 89.7 32 ............CA..............C TGTCAGTCGAAGGACCGGTTGCCCCACCACAG 14668 29 93.1 32 ............CA............... GCGCGGGCATCCTGTGAGCCGCCTCCGCCCCG 14607 29 93.1 32 ............CA............... AGGGACGGCCCGCGGTTCGTGCGTCGGCAGGT 14546 29 93.1 32 ............CA............... CCCGCCGCTGCTGACGGCCCGTTCGAGAAGCT 14485 29 93.1 32 ............CA............... ATGTCCGGCACCGGCATCCACACCGCCATCGG 14424 29 93.1 32 ............CA............... TTCTTGTGCACAGGGGTGTCGCACTGGCGCCC 14363 29 89.7 32 ............CA..............C GGCGGTGAGGCGGACTACTTCAAGGGTGTGCC 14302 29 93.1 0 ............C...............C | ========== ====== ====== ====== ============================= ================================ ================== 34 29 95.6 32 GTCGGCCCCGCATGCGCGGGGATGCTCCG # Left flank : AGCTCCTCGTCGTCCATGCCCGGACAACGCGCGGACTGATCCGGACACGATCCGGATCAGTCCGGACCGGCGTCCGGATCGTGCCTGGACGCCGGACAGCCATAAGGCCACCCCGAAGGGTGGCCTTATGGCGTCGGCCGACTGTCGAAAGTCTCAAACTGGTGCCGCCGTATCCGGTGGCAGACGACCAGCCCGGGCACCGGCTTTCTACGGGCGACCGCCATCTCCGGTCGTTGGCGGGGCCATGCTGGTGGGCCGGTTCGGCACAGTGCCAGCAGAACCAACAGCCACCTCAGCGAGACGACCAGGCGCGCACCGTCCGGGGATTTGGCAGGTGTGACCCCCTCCGGTTCCGTACGGTAGGCGAGTCTCTCGCGGAGGTCGCGTACGTCGCGATCTCTGAAGACGGCCCCCGCCATTCGCTGCCGGCCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : GCGCCGTCCGGGACGTCGGCTCCGAGCCAGCCTGTGGTCATTCGATCGGGGCTCACTTCGGGCCGCTGCGGCAGCTCACCTTCGGGCTCACTGCGCGCGGCGGGGCCGGTGCTGCGGCGGGATCGCGTTTTTGCCCTCAAGGAGCATGATCGCACGGTCCGAGGCCGGAGCGAGGCCCGAACGGGAGGGTCATGCCGCCTTCCTGCGGCCGGGGCCGAGGATCTCCAGCCGGCGGACGGTCTCTCGGCCGCCGGTCTCCTCGGCGATGCGGTCGAGCAGCGCGTGCTGGCGGTGGCGGACAGCGGTGGCTGCGGCCGAGGAGTCAGGCTGGAGGGTGAGGGTCGCGGTGTCTGCGTCGTACTTGACGGCAGTGACGCGCCCAGCGAGGTCGTCGGCGATGTGCGACCACCGGTCCAGCACGCCGCCGGCCGCGACCGGAGCCGTCCAGGCGCGGTCTGCGATGAGCTGCTGGATAGCCTCGCCGAAGGAGACCGGCTCCC # Questionable array : NO Score: 5.35 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCATGCGCGGGGATGCTCCG # Alternate repeat : GTCGGCCCCGCACGCGCGGGGATGCTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23456-20692 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYE010000003.1 Streptomyces sp. McG6 NODE_3_length_30466_cov_24.3145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 23455 28 100.0 33 ............................ CCGCTCCTCGAAAGTGCTGACCGCCGAGCCCAC 23394 28 100.0 33 ............................ GCGCATGGGTTCCTCGATGCGGCGAGGCCGCGG 23333 28 100.0 34 ............................ GTAGGCCGAGTCATAGCTGATCACCTGGCGTTTC 23271 28 100.0 33 ............................ CGAGCGATGGCCCGGGAATCTCACCTCCCGGGC 23210 28 100.0 5 ............................ CCATG Deletion [23178] 23169 28 82.1 2 .....................TC.GCC. CG Deletion [23140] 23149 28 100.0 33 ............................ GCGCCTGGCCGAGGCCGCGCGCACGATGGTCCA 23088 28 100.0 33 ............................ TGGCTGGCCGACCTCATCGGCCGCAAGAGCCAC 23027 28 100.0 33 ............................ CGTGCCGTGCGCGATGCCCGGCGTGAGCGTGAC 22966 28 100.0 33 ............................ GCTCTCCACGCTGCTCCGACTTTGCGAAGCGCT 22905 28 100.0 33 ............................ GGTACATGACTCTCTGCCGAAGGTACACATCTT 22844 28 100.0 33 ............................ GCTGGCCCACGACAAGGCCGACGTCGGCGCCGC 22783 28 100.0 33 ............................ GTGCTGGACGCAGATCCAGAAGCACCACCCGGA 22722 28 100.0 33 ............................ CTTGCCCAGGTCAGATGGGGTAACAGTCGCCCG 22661 28 100.0 33 ............................ GGCGTCGTGCGGGCCGGGGGCGTTGAGCACGAT 22600 28 100.0 33 ............................ GCGCGGGACGAAAGGAAGCGGCCGACCTTTGTG 22539 28 100.0 33 ............................ CCATCATGGTTGCCGCCCCCTCACTAGTCAGGC 22478 28 100.0 33 ............................ TGCTCCATTTCCGGCCTGTCCGAAACGTCCCCG 22417 28 100.0 33 ............................ CTCCGGCCACCGCCGCCACAGCGAACTGCCGAT 22356 28 100.0 33 ............................ CGCTTGTCCGTGGGGACGGGGCTGCTGTAGATC 22295 28 100.0 33 ............................ TGGGCCTACGCGCCATCGCCGCCGCCGCCAAGG 22234 28 100.0 33 ............................ GTTCTTGAAGGCGTCGGTGGCGGTGGCCCGGGA 22173 28 100.0 33 ............................ CGCAGAGCTGACCCGCCGCGTCCGGGCCCTCAC 22112 28 100.0 33 ............................ TTCAGCATCGACCTCGGCGCCCGTGAGCGCGAT 22051 28 100.0 33 ............................ CGACATCGGCCTGTTCCTGCGGGAGATGAAGAC 21990 28 100.0 33 ............................ GCCCTCGTGCAGGTCCACCCGCCACCCCTGTGC 21929 28 100.0 33 ............................ CGAGCGGAACGGCCGGCGGTCCCCACCCTCACC 21868 28 100.0 33 ............................ GTCGTGGGCGCCGGGGTGGCGGACGCCGATCGA 21807 28 100.0 33 ............................ GAGGCGGACGGCGGGTATCTCGCGCTGTGCCCG 21746 28 100.0 33 ............................ GACAGACGTCGCCAGCGGGAGCAGCAAGTCCCC 21685 28 100.0 33 ............................ GCCCAGTACGGCGCCGGCTACCAGACCGTGCGC 21624 28 96.4 35 ..........................C. GGCGTCGGGCCCCTCTCAGTTGTCCCGCCAGGAGT 21561 28 96.4 33 ..........................C. GCCTCCCACCGTGCGGTGGGGCATCGTGCCGGT 21500 28 96.4 33 ..........................C. GCTGCTCGGCGTGACAGTGGCCGGGCGTAGGCT 21439 28 96.4 32 ..........................C. GACGGGGAGCGCCGGATCGCGGTGTTCTCCAA 21379 28 96.4 33 ..........................C. GTACGCCGCCCTCCTCTACGGCACCTTCGAGCG 21318 28 92.9 33 ...........G..............C. GCCATGCTGAGGCTTGATACCCACCGCCCTATC 21257 28 96.4 33 ..........................C. CGGCCAGCGGCCGGAGGGGAGTGGGGGGTGAGC 21196 28 96.4 33 ..........................C. AGGCATTGCCCAGTTCATTGACGCCACGTGGGA 21135 28 96.4 33 ..........................C. GCCGTCCTCGATCGACTCGCGCACCGCCTGGGC 21074 28 96.4 33 ..........................C. CGGTGTCCTCGACGGTCGCCGATGCCGGCACGG 21013 28 96.4 33 ..........................C. GGCCGACACGTCGACGTCGCCGTAGTCGATGGA A [20992] 20951 28 92.9 33 ...................A......C. GCCGGTGCTCGACGTTGCGGATGCGCTCCTGGA 20890 28 92.9 33 .............G............C. GGCGTACCCGCACCCGGCCCGCGTCGACGCCGC 20829 28 85.7 21 .............G........CA..C. TCAGGATGCGGCCGGGGCCCG Deletion [20781] 20780 28 89.3 33 ..............T...........CG GAAGGTCGGGGAGATGGTCGATCCGGCGTTGCT 20719 28 82.1 0 ....T............A...GC...C. | ========== ====== ====== ====== ============================ =================================== ================== 47 28 97.5 32 GTCGGCCCCGCACCCGCGGGGATGCTTC # Left flank : CGCCGGCCTCTTCGTCACCCACCGCCTCGCCTCAGCCCGCATCGCCGACCGCGTAGTAGTCCTCCACCACGGGCGCGTCACCGAATCCGGAACATACGACGAGTTGCTACACCAGCCCGGCAGCCGCTTCGCCGAGCTACACCAACTCCAAAGCGGAACCGAACTGGTCCCGTGAACATTGCCCCCGCCTGGCGTCGGCCCTCCCACACCTGACCCCATTCCCGGGAGAGGACAAGCCGCCTACCAGCAGCGCCTGGAGCAACGCCCCGTACCCCCAGCAGAACCAACAGCCACCTCAGCGCGACGAGCAGGCACGCACCGTCCGGGGATTGGGAAGGTGTGACACCCTCCGATTCCGTACGGTAGGCGAGCCTCTCTCGGAGGTCGCGTACATCGCGATCTCTGAAGACGATCCCCATTCGCTCCCGACCCACGAACGAAGGGTGAAGCACATGAATGAAAATGAGGCACCCTCGCGGTAACCTCCCAGGTCAGCAAGT # Right flank : CCGCAACGGAGAGCAGTTGGAGATCACCCTCTAGTACTCCAGCAGGATTTCGCAGTTTGACCTGGTCTTTTCGCCGGGTGGCGGGAGTGTAGCGGGACTCCGGTCGTGCGGGGGCGGTCTCACGGAGACCGCCCCTCGATCGTGCGACAACGCCGCAGGTAGTGACAGCGGCGGGCGACTGCTTGGCGTCGGCGGCGCCAGTTCGACCAGCTCAGCGTGTGGTGTAGTCCCCGGTGTCCACTCAGGTGCGGGGGCTGGGCACGACAAGCTGCCAGGAGTCGCCGAACCTCCGCCACTGTGAGCCCGATGACCCCGGCTGTCCCACCTGTTCCGCCCCCTTTTCCCAGGACTGGTGTGCCATGGCGGTCAGGAAGGCGTGCGCGAGCATGGCCAGAGTGATGTGCCGATGCCAGCCCACGTAGCGGCGGACCTCGTACTGGTCCAGGCCGCACTCGTTCTTCGCGGCCTGGAAGCACTCCTCGATCGCCCAGCGCGCCCCG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 27761-26880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYE010000003.1 Streptomyces sp. McG6 NODE_3_length_30466_cov_24.3145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 27760 28 96.4 37 ............T............... GTACGGCGTCACCGAGCCAGGTCGCCGCCTCCACGTC 27695 28 100.0 33 ............................ GGAACTCGGCGTGGAGGACGCCCCGTACAGCGT 27634 28 100.0 33 ............................ CCTCTGCGCCCAGGTCTTGACGGCGGTCATGTC 27573 28 96.4 33 .............G.............. TCCGACTGGTCCACCCACAGCCACATCGGCATC 27512 28 100.0 33 ............................ CACGGTGAACGACGGCGCCGTCTACACCGGCAC 27451 28 89.3 33 ...............A.....T..T... TACGCGCCGCCGCGCCCCCGCCCTCCTCGTGTC 27390 28 92.9 33 .............T..........T... GGTCTGCGCGGTGGTCTCCTTGGCCGCGCTCAG 27329 28 96.4 33 ........................T... GCTGCACTCCGCGCCGGTGGTGGCGAGGATGTC 27268 28 89.3 33 ..T......T..............T... GCAGCTCGGCCTCTGCCGACGCCTGGGCATCGC 27207 28 96.4 33 ........................T... CGAGTCGGGGTTCGTGGCCGCGACGATGAACGG 27146 28 96.4 33 ........................T... GATTCCCGGACCGGTCTCCGCCGGCCCCTGATC 27085 28 92.9 33 .........C.......T.......... GGTCTGGTCCGTTATGAAGGAGGCCGGCGCACG T [27080] 27023 28 96.4 33 ..............T............. CTGTCCATCGTGCGGAGCGCAAGCGCTACAACA 26962 28 100.0 27 ............................ GAGGCCAAGGTCGGCGCCGCGCGTCGC 26907 28 82.1 0 .....T...........T.A...C...T | ========== ====== ====== ====== ============================ ===================================== ================== 15 28 95.0 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGACAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGAACTGATCGAGAACGGCGAGTTCTCTGGGATCTTTCAACGGGTGATCAACGACTGACCAAAGTGCTCGGCCGCCGGAAGCGTCGTGGATGGCCAGGCCACGTCGTTCTCGCGCTCGATGGCC # Right flank : CAGGTTCGGAACGGGCGGGCGGCGCCTTGTCGGGTCGGCCCTGGGCGCCTTCGGTATCCGTACGCCCCCTACCGCCCCAGCCCGGCCCGACGCACCGTGGCCCTTCCGGCGCAGCGCCGGACCAGGAGGAGGGGCGGCAATTAACGCCCATCGTGTGGAGCGCAAGCGCTGCAACAGGGCTCTGGGTGGGTGTGGAGTCAGACGTGCGGCTGGTCATGCGTCGCCCCGCTGCCCACCGCGCCGGTAGCCTCGCCGTATGAGTAGGCCGCCAGAGATCACCCGCACCGAGTGCCGGCAGTGCGGTACCGAGATCTACGGGGTGAACGGCCGCTACTCCTGCACCGTGTGCGGCTGGGTCAACCCCTGGTACGAGGGGCACGGCGAGCTGCCCACTGCCAAGGACGACCCTGACTACCCGCGTCGTAGAAACGCCCGCTGAGTTACAGCAGTCCGAGGTCCGTGTCCGGTCGGCACATGCTGCAGGCCTCCACGTCGACGAG # Questionable array : NO Score: 5.41 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : GTCGGCCCCGCACCCGCGGGGATGTTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 29499-28373 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXYE010000003.1 Streptomyces sp. McG6 NODE_3_length_30466_cov_24.3145, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29498 28 100.0 33 ............................ CAGGGCCGGGACGATGCCGCACGCCATGACGAC 29437 28 100.0 33 ............................ CCACGACAACCCCGCCCACCTCACCCGCGCCCA 29376 28 100.0 33 ............................ GGCGGCCCGTAGGGCCCGTGACCGAGGTTGACT 29315 28 100.0 33 ............................ GTTCTATCGCCGCATGCGCCTGGCCGCAGTCGG 29254 28 100.0 33 ............................ CCTCTGACCTGCGATGATGCCGCGCGAATGGGG 29193 28 100.0 33 ............................ GGTTCAGGAGTGGGCCGGGTGGCGTACCCGCAA 29132 28 100.0 33 ............................ CAGCGAGCGGGAGGTGTCGGCCCTGGCCCAGCC 29071 28 100.0 33 ............................ TGACGCCGAGCAGGCAGGCCACATCGTCCGGGT 29010 28 100.0 33 ............................ GTCGTACCGCGACGGGCACTTCGGCACGGCGAC 28949 28 100.0 33 ............................ GGACCACCCCAACGACTGCCGCCAGCTCATCAC 28888 28 100.0 33 ............................ GACAGGGCGCCGGATCAGCCGGTAGGCCAACCT 28827 28 100.0 33 ............................ CCACCAGGTTGCTCACGCGCTGTGTGCGCGGAG 28766 28 100.0 33 ............................ CGTCACCGTCGCCACCATCCGCACCTGGTGCCG 28705 28 100.0 33 ............................ GCCGACGGGGGCGTCCTCGCGGGTGCGCACGGG 28644 28 100.0 33 ............................ CAGGACCCGGTCGTACAGCGGCGCGATCGGCGC 28583 28 100.0 33 ............................ CGGATACGGCGACACCCGCACCCACAGCGCCTC 28522 28 100.0 33 ............................ GGGGTTCGATGGTCTGAAGAAGCGCCTCACCGG 28461 28 96.4 33 ........................T... GTACCTCCACCCCGAGGACCCGGACCTGCCGAC 28400 28 89.3 0 ..........T.........A...T... | ========== ====== ====== ====== ============================ ================================= ================== 19 28 99.2 33 GTCGGCCCCGCACCCGCGGGGATGCTCC # Left flank : CTGGAATGCAGGCGTTGCCTTACCAAGATCGTGGACAGCGCATAGCCACGCAAACAACCTGCGGCCCTGACCCGGACCACCGGACACCTCGTCCAGCAGGCCCCGTGTCGAAGGGGCAAGGAAGCTGTCCCACAGCCGCTCAGCCACAGCCGCCGTATCAAGCAGGTGCGACAGAAGAAGATTCGTCTGCCCGCCGGCACGCTCCGCCGACTTCCCCCACAAAACCCCTAACGGACCTTCCACCGACTCCAGCGGCACCCCTGCATCCGGCACGCCGGACCACCCTTCGCTCAGCACTCACAACTGCCCGGCACAGTAGAGGACACCACTGACAATTGACGGCGGACGGCCCAAAGACGAACATCCCCTACGGCAGGCGCCCGCTCTACGCGGTCACGCACGCCGCGCTCCCTGCCACTCGCTGCCCGGCCCATGAACGAAGGGCGACGCACATGAATGAAAATGAGGCACTCTCGCGCTAACCTCCCAGGTCAGCAAGT # Right flank : CCAGTAGTCGTTCTCGGTGAACTCCCAGTCGGTGTCGGCCCCGCATGTCGGCGTACGGACTTTTCTCCCCGGTGGCGTACGGACGAACGTCCCCAGTTCTGGCCACGGGCAGCGGCAACGGGACAGAGGATCTCGGTTGAGATCGATGACCCGAGCAGGGACACTCACGCGATGAGCCCCAGCACATCGTCGGAGCCGATCGAGCGAGGGTGGGACGAGCCCTGGTATCGGGTCCGCATGGAGAACTTCCAGGCATCGTTCCTGCCCAGCGCCAGCGAGGACTTGGACGAGGTCTGCAACGTCGATGTCTTGGTGACTCTGACGGACGGATCCTGTTGGACCGCGACCATGTTCACTGTCGCGGAAGTCGAGCGCCTGATGAAGCTTTGGACAGGGACCGACGAGGCCCTCGGGGGCCGGTATTTCTGGGTCTCGGACGGCCTGATCGTCAGGGATCCCGGCATCGGCAGCATGACCGGCGTGATCGCCGAACTGATCGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCGCACCCGCGGGGATGCTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCCGCGGGGATGCTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //